RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 NAT8BQ9UHF3 227 aa16.36■□□□□ 0.21
RAPGEF1-206ENST00000438647 UBE2L6O14933 153 aa16.35■□□□□ 0.21
RAPGEF1-206ENST00000438647 AMTP48728 403 aa16.35■□□□□ 0.21
RAPGEF1-206ENST00000438647 KRTAP10-1P60331 282 aa16.35■□□□□ 0.21
RAPGEF1-206ENST00000438647 NUP35Q8NFH5 326 aa16.35■□□□□ 0.21
RAPGEF1-206ENST00000438647 RPL39LQ96EH5 51 aaKnown RBP16.35■□□□□ 0.21
RAPGEF1-206ENST00000438647 PRR34Q9NV39 138 aa16.34■□□□□ 0.21
RAPGEF1-206ENST00000438647 A0A1B0GUV1 79 aa16.33■□□□□ 0.2
RAPGEF1-206ENST00000438647 LINC00269Q8N2A0 174 aa16.33■□□□□ 0.2
RAPGEF1-206ENST00000438647 SDHAF1A6NFY7 115 aa16.32■□□□□ 0.2
RAPGEF1-206ENST00000438647 NCR2O95944 276 aa16.32■□□□□ 0.2
RAPGEF1-206ENST00000438647 TRBV6-5A0A0K0K1A5 114 aa16.31■□□□□ 0.2
RAPGEF1-206ENST00000438647 PCLOQ9Y6V0 5065 aa16.31■□□□□ 0.2
RAPGEF1-206ENST00000438647 C14orf177Q52M58 125 aa16.3■□□□□ 0.2
RAPGEF1-206ENST00000438647 CLPSL2Q6UWE3 100 aa16.3■□□□□ 0.2
RAPGEF1-206ENST00000438647 Q8N1X5 172 aa16.3■□□□□ 0.2
RAPGEF1-206ENST00000438647 DEFB104AQ8WTQ1 72 aa16.3■□□□□ 0.2
RAPGEF1-206ENST00000438647 MRAP2Q96G30 205 aa16.3■□□□□ 0.2
RAPGEF1-206ENST00000438647 IGLV2-33A0A075B6J2 118 aaPredicted RBP16.29■□□□□ 0.2
RAPGEF1-206ENST00000438647 SMIM27A0A1W2PRY6 76 aa16.29■□□□□ 0.2
RAPGEF1-206ENST00000438647 REG3AQ06141 175 aa16.29■□□□□ 0.2
RAPGEF1-206ENST00000438647 C20orf203Q8NBC4 194 aa16.29■□□□□ 0.2
RAPGEF1-206ENST00000438647 APCSP02743 223 aa16.28■□□□□ 0.2
RAPGEF1-206ENST00000438647 RAB4AP20338 218 aa16.28■□□□□ 0.2
RAPGEF1-206ENST00000438647 AMN1Q8IY45 258 aa16.28■□□□□ 0.2
RAPGEF1-206ENST00000438647 RNF185Q96GF1 192 aa16.28■□□□□ 0.2
RAPGEF1-206ENST00000438647 TMEM70Q9BUB7 260 aa16.28■□□□□ 0.2
RAPGEF1-206ENST00000438647 ST20Q9HBF5 79 aa16.28■□□□□ 0.2
RAPGEF1-206ENST00000438647 I3L3M4 83 aa16.27■□□□□ 0.2
RAPGEF1-206ENST00000438647 PMCHP20382 165 aa16.27■□□□□ 0.2
RAPGEF1-206ENST00000438647 IGLV4-60A0A075B6I1 120 aa16.26■□□□□ 0.19
RAPGEF1-206ENST00000438647 A0A1B0GW15 77 aa16.26■□□□□ 0.19
RAPGEF1-206ENST00000438647 HLA-DQA1P01909 254 aa16.26■□□□□ 0.19
RAPGEF1-206ENST00000438647 XGP55808 180 aa16.26■□□□□ 0.19
RAPGEF1-206ENST00000438647 TRAV8-4A0A0B4J246 113 aa16.25■□□□□ 0.19
RAPGEF1-206ENST00000438647 H7C423 109 aa16.25■□□□□ 0.19
RAPGEF1-206ENST00000438647 PPP1R17O96001 155 aa16.25■□□□□ 0.19
RAPGEF1-206ENST00000438647 AMMECR1LQ6DCA0 310 aa16.24■□□□□ 0.19
RAPGEF1-206ENST00000438647 DNAH8Q96JB1 4490 aa16.23■□□□□ 0.19
RAPGEF1-206ENST00000438647 GAS8-AS1O95177 125 aa16.23■□□□□ 0.19
RAPGEF1-206ENST00000438647 S100A8P05109 93 aa16.22■□□□□ 0.19
RAPGEF1-206ENST00000438647 CLLU1Q5K131 121 aa16.22■□□□□ 0.19
RAPGEF1-206ENST00000438647 KRTAP4-5Q9BYR2 181 aa16.22■□□□□ 0.19
RAPGEF1-206ENST00000438647 ABCA13Q86UQ4 5058 aa16.21■□□□□ 0.19
RAPGEF1-206ENST00000438647 USP17L23D6RBM5 183 aa16.21■□□□□ 0.19
RAPGEF1-206ENST00000438647 PPP1R2P9O14990 202 aa16.21■□□□□ 0.19
RAPGEF1-206ENST00000438647 RPS10P46783 165 aaKnown RBP16.21■□□□□ 0.19
RAPGEF1-206ENST00000438647 CAMPP49913 170 aa16.21■□□□□ 0.19
RAPGEF1-206ENST00000438647 PNRC1Q12796 327 aaPredicted RBP16.21■□□□□ 0.19
RAPGEF1-206ENST00000438647 FAM104BQ5XKR9 115 aa16.21■□□□□ 0.19
RAPGEF1-206ENST00000438647 KRTAP17-1Q9BYP8 105 aa16.21■□□□□ 0.19
RAPGEF1-206ENST00000438647 IGLV10-54A0A075B6I4 117 aa16.2■□□□□ 0.18
RAPGEF1-206ENST00000438647 TRBV27A0A0K0K1C4 114 aa16.2■□□□□ 0.18
RAPGEF1-206ENST00000438647 POLR2KP53803 58 aaKnown RBP16.2■□□□□ 0.18
RAPGEF1-206ENST00000438647 IGKV2D-29A0A075B6S2 120 aaPredicted RBP16.19■□□□□ 0.18
RAPGEF1-206ENST00000438647 IGKV2-29A2NJV5 120 aaPredicted RBP16.19■□□□□ 0.18
RAPGEF1-206ENST00000438647 ZNF25P17030 456 aaPredicted RBP16.19■□□□□ 0.18
RAPGEF1-206ENST00000438647 RNASEKQ6P5S7 137 aaKnown RBP16.19■□□□□ 0.18
RAPGEF1-206ENST00000438647 KRTAP26-1Q6PEX3 210 aa16.19■□□□□ 0.18
RAPGEF1-206ENST00000438647 TMEM242Q9NWH2 141 aa16.19■□□□□ 0.18
RAPGEF1-206ENST00000438647 SMKR1H3BMG3 65 aa16.18■□□□□ 0.18
RAPGEF1-206ENST00000438647 TSHBP01222 138 aa16.18■□□□□ 0.18
RAPGEF1-206ENST00000438647 FGF6P10767 208 aa16.18■□□□□ 0.18
RAPGEF1-206ENST00000438647 HBBP68871 147 aa16.18■□□□□ 0.18
RAPGEF1-206ENST00000438647 LINC00862A6NCI5 91 aa16.17■□□□□ 0.18
RAPGEF1-206ENST00000438647 F8W036 122 aa16.17■□□□□ 0.18
RAPGEF1-206ENST00000438647 VCYO14598 125 aa16.17■□□□□ 0.18
RAPGEF1-206ENST00000438647 MRPL51Q4U2R6 128 aaKnown RBP16.17■□□□□ 0.18
RAPGEF1-206ENST00000438647 MRPL54Q6P161 138 aaKnown RBP16.17■□□□□ 0.18
RAPGEF1-206ENST00000438647 BTF3L4Q96K17 158 aa16.17■□□□□ 0.18
RAPGEF1-206ENST00000438647 EPM2AB3EWF7 344 aa16.16■□□□□ 0.18
RAPGEF1-206ENST00000438647 ESDP10768 282 aa16.16■□□□□ 0.18
RAPGEF1-206ENST00000438647 SUMO2P61956 95 aaKnown RBP16.16■□□□□ 0.18
RAPGEF1-206ENST00000438647 NRACQ8N912 160 aa16.16■□□□□ 0.18
RAPGEF1-206ENST00000438647 CLRN3Q8NCR9 226 aa16.15■□□□□ 0.18
RAPGEF1-206ENST00000438647 TMEM101Q96IK0 257 aa16.15■□□□□ 0.18
RAPGEF1-206ENST00000438647 KIR2DL4Q99706 377 aa16.15■□□□□ 0.18
RAPGEF1-206ENST00000438647 FAT1Q14517 4588 aa16.15■□□□□ 0.18
RAPGEF1-206ENST00000438647 C7orf77A4D0Y5 90 aa16.14■□□□□ 0.17
RAPGEF1-206ENST00000438647 MT-ND4LP03901 98 aa16.14■□□□□ 0.17
RAPGEF1-206ENST00000438647 FCER1GP30273 86 aa16.14■□□□□ 0.17
RAPGEF1-206ENST00000438647 CKS2P33552 79 aa16.14■□□□□ 0.17
RAPGEF1-206ENST00000438647 Q6ZSA8 131 aa16.14■□□□□ 0.17
RAPGEF1-206ENST00000438647 ATP5L2Q7Z4Y8 100 aa16.14■□□□□ 0.17
RAPGEF1-206ENST00000438647 ANAPC16Q96DE5 110 aa16.14■□□□□ 0.17
RAPGEF1-206ENST00000438647 FAM30AQ9NZY2 134 aa16.14■□□□□ 0.17
RAPGEF1-206ENST00000438647 IGKV3OR2-268A0A0C4DH90 116 aa16.13■□□□□ 0.17
RAPGEF1-206ENST00000438647 A0A1B0GXF2 115 aa16.13■□□□□ 0.17
RAPGEF1-206ENST00000438647 PRSS1P07477 247 aa16.12■□□□□ 0.17
RAPGEF1-206ENST00000438647 LINC01620Q4KN68 170 aa16.12■□□□□ 0.17
RAPGEF1-206ENST00000438647 DGAT2L7PQ6IED9 249 aa16.12■□□□□ 0.17
RAPGEF1-206ENST00000438647 OR5A1Q8NGJ0 315 aa16.12■□□□□ 0.17
RAPGEF1-206ENST00000438647 C20orf78Q9BR46 151 aa16.12■□□□□ 0.17
RAPGEF1-206ENST00000438647 HAMPP81172 84 aa16.11■□□□□ 0.17
RAPGEF1-206ENST00000438647 UQCC3Q6UW78 93 aa16.11■□□□□ 0.17
RAPGEF1-206ENST00000438647 TRBV24-1A0A075B6N3 115 aa16.1■□□□□ 0.17
RAPGEF1-206ENST00000438647 IFITM2Q01629 132 aa16.1■□□□□ 0.17
RAPGEF1-206ENST00000438647 SMAGPQ0VAQ4 97 aa16.1■□□□□ 0.17
RAPGEF1-206ENST00000438647 MRPL52Q86TS9 123 aaKnown RBP16.1■□□□□ 0.17
RAPGEF1-206ENST00000438647 PPBPP02775 128 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 172.7 ms