RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 MIAQ16674 131 aa10.05□□□□□ -0.8
LIMS3-201ENST00000437679 RPL39LQ96EH5 51 aaKnown RBP10.05□□□□□ -0.8
LIMS3-201ENST00000437679 TMEM191AQ9H0A3 160 aa10.05□□□□□ -0.8
LIMS3-201ENST00000437679 NAT8BQ9UHF3 227 aa10.05□□□□□ -0.8
LIMS3-201ENST00000437679 NUP35Q8NFH5 326 aa10.04□□□□□ -0.8
LIMS3-201ENST00000437679 DEFB104AQ8WTQ1 72 aa10.04□□□□□ -0.8
LIMS3-201ENST00000437679 CLPSL2Q6UWE3 100 aa10.03□□□□□ -0.8
LIMS3-201ENST00000437679 LINC00269Q8N2A0 174 aa10.03□□□□□ -0.8
LIMS3-201ENST00000437679 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.02□□□□□ -0.81
LIMS3-201ENST00000437679 A0A1B0GUV1 79 aa10.02□□□□□ -0.81
LIMS3-201ENST00000437679 SDHAF1A6NFY7 115 aa10.02□□□□□ -0.81
LIMS3-201ENST00000437679 NCR2O95944 276 aa10.02□□□□□ -0.81
LIMS3-201ENST00000437679 PRR34Q9NV39 138 aa10.02□□□□□ -0.81
LIMS3-201ENST00000437679 TRBV6-5A0A0K0K1A5 114 aa10.01□□□□□ -0.81
LIMS3-201ENST00000437679 RAB4AP20338 218 aa10.01□□□□□ -0.81
LIMS3-201ENST00000437679 PMCHP20382 165 aa10.01□□□□□ -0.81
LIMS3-201ENST00000437679 REG3AQ06141 175 aa10.01□□□□□ -0.81
LIMS3-201ENST00000437679 Q8N1X5 172 aa10.01□□□□□ -0.81
LIMS3-201ENST00000437679 MRAP2Q96G30 205 aa10.01□□□□□ -0.81
LIMS3-201ENST00000437679 SMIM27A0A1W2PRY6 76 aa10□□□□□ -0.81
LIMS3-201ENST00000437679 I3L3M4 83 aa10□□□□□ -0.81
LIMS3-201ENST00000437679 HLA-DQA1P01909 254 aa10□□□□□ -0.81
LIMS3-201ENST00000437679 APCSP02743 223 aa10□□□□□ -0.81
LIMS3-201ENST00000437679 C14orf177Q52M58 125 aa10□□□□□ -0.81
LIMS3-201ENST00000437679 AMN1Q8IY45 258 aa10□□□□□ -0.81
LIMS3-201ENST00000437679 C20orf203Q8NBC4 194 aa10□□□□□ -0.81
LIMS3-201ENST00000437679 RNF185Q96GF1 192 aa10□□□□□ -0.81
LIMS3-201ENST00000437679 ST20Q9HBF5 79 aa10□□□□□ -0.81
LIMS3-201ENST00000437679 IGLV4-60A0A075B6I1 120 aa9.99□□□□□ -0.81
LIMS3-201ENST00000437679 XGP55808 180 aa9.99□□□□□ -0.81
LIMS3-201ENST00000437679 TMEM70Q9BUB7 260 aa9.99□□□□□ -0.81
LIMS3-201ENST00000437679 A0A1B0GW15 77 aa9.98□□□□□ -0.81
LIMS3-201ENST00000437679 GAS8-AS1O95177 125 aa9.98□□□□□ -0.81
LIMS3-201ENST00000437679 AMMECR1LQ6DCA0 310 aa9.98□□□□□ -0.81
LIMS3-201ENST00000437679 KRTAP17-1Q9BYP8 105 aa9.98□□□□□ -0.81
LIMS3-201ENST00000437679 KRTAP4-5Q9BYR2 181 aa9.98□□□□□ -0.81
LIMS3-201ENST00000437679 TRAV8-4A0A0B4J246 113 aa9.97□□□□□ -0.81
LIMS3-201ENST00000437679 H7C423 109 aa9.97□□□□□ -0.81
LIMS3-201ENST00000437679 PPP1R17O96001 155 aa9.97□□□□□ -0.81
LIMS3-201ENST00000437679 CAMPP49913 170 aa9.97□□□□□ -0.81
LIMS3-201ENST00000437679 IGLV10-54A0A075B6I4 117 aa9.96□□□□□ -0.82
LIMS3-201ENST00000437679 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.96□□□□□ -0.82
LIMS3-201ENST00000437679 IGKV2-29A2NJV5 120 aaPredicted RBP9.96□□□□□ -0.82
LIMS3-201ENST00000437679 USP17L23D6RBM5 183 aa9.96□□□□□ -0.82
LIMS3-201ENST00000437679 S100A8P05109 93 aa9.96□□□□□ -0.82
LIMS3-201ENST00000437679 RPS10P46783 165 aaKnown RBP9.96□□□□□ -0.82
LIMS3-201ENST00000437679 CLLU1Q5K131 121 aa9.96□□□□□ -0.82
LIMS3-201ENST00000437679 RNASEKQ6P5S7 137 aaKnown RBP9.96□□□□□ -0.82
LIMS3-201ENST00000437679 SMKR1H3BMG3 65 aa9.95□□□□□ -0.82
LIMS3-201ENST00000437679 PPP1R2P9O14990 202 aa9.95□□□□□ -0.82
LIMS3-201ENST00000437679 POLR2KP53803 58 aaKnown RBP9.95□□□□□ -0.82
LIMS3-201ENST00000437679 PNRC1Q12796 327 aaPredicted RBP9.95□□□□□ -0.82
LIMS3-201ENST00000437679 FAM104BQ5XKR9 115 aa9.95□□□□□ -0.82
LIMS3-201ENST00000437679 KRTAP26-1Q6PEX3 210 aa9.95□□□□□ -0.82
LIMS3-201ENST00000437679 TMEM242Q9NWH2 141 aa9.95□□□□□ -0.82
LIMS3-201ENST00000437679 VCYO14598 125 aa9.94□□□□□ -0.82
LIMS3-201ENST00000437679 TSHBP01222 138 aa9.94□□□□□ -0.82
LIMS3-201ENST00000437679 FGF6P10767 208 aa9.94□□□□□ -0.82
LIMS3-201ENST00000437679 MRPL51Q4U2R6 128 aaKnown RBP9.94□□□□□ -0.82
LIMS3-201ENST00000437679 MRPL54Q6P161 138 aaKnown RBP9.94□□□□□ -0.82
LIMS3-201ENST00000437679 BTF3L4Q96K17 158 aa9.94□□□□□ -0.82
LIMS3-201ENST00000437679 DNAH8Q96JB1 4490 aa9.93□□□□□ -0.82
LIMS3-201ENST00000437679 IGKV3OR2-268A0A0C4DH90 116 aa9.93□□□□□ -0.82
LIMS3-201ENST00000437679 TRBV27A0A0K0K1C4 114 aa9.93□□□□□ -0.82
LIMS3-201ENST00000437679 EPM2AB3EWF7 344 aa9.93□□□□□ -0.82
LIMS3-201ENST00000437679 F8W036 122 aa9.93□□□□□ -0.82
LIMS3-201ENST00000437679 ZNF25P17030 456 aaPredicted RBP9.93□□□□□ -0.82
LIMS3-201ENST00000437679 HBBP68871 147 aa9.93□□□□□ -0.82
LIMS3-201ENST00000437679 TMEM101Q96IK0 257 aa9.93□□□□□ -0.82
LIMS3-201ENST00000437679 FAM30AQ9NZY2 134 aa9.93□□□□□ -0.82
LIMS3-201ENST00000437679 LINC00862A6NCI5 91 aa9.92□□□□□ -0.82
LIMS3-201ENST00000437679 ESDP10768 282 aa9.92□□□□□ -0.82
LIMS3-201ENST00000437679 FCER1GP30273 86 aa9.92□□□□□ -0.82
LIMS3-201ENST00000437679 SUMO2P61956 95 aaKnown RBP9.92□□□□□ -0.82
LIMS3-201ENST00000437679 HAMPP81172 84 aa9.92□□□□□ -0.82
LIMS3-201ENST00000437679 LINC01620Q4KN68 170 aa9.92□□□□□ -0.82
LIMS3-201ENST00000437679 NRACQ8N912 160 aa9.92□□□□□ -0.82
LIMS3-201ENST00000437679 MT-ND4LP03901 98 aa9.91□□□□□ -0.82
LIMS3-201ENST00000437679 PRSS1P07477 247 aa9.91□□□□□ -0.82
LIMS3-201ENST00000437679 CKS2P33552 79 aa9.91□□□□□ -0.82
LIMS3-201ENST00000437679 CLRN3Q8NCR9 226 aa9.91□□□□□ -0.82
LIMS3-201ENST00000437679 ANAPC16Q96DE5 110 aa9.91□□□□□ -0.82
LIMS3-201ENST00000437679 FAT1Q14517 4588 aa9.9□□□□□ -0.82
LIMS3-201ENST00000437679 A0A1B0GXF2 115 aa9.9□□□□□ -0.82
LIMS3-201ENST00000437679 C7orf77A4D0Y5 90 aa9.9□□□□□ -0.82
LIMS3-201ENST00000437679 SMR3BP02814 79 aaPredicted RBP9.9□□□□□ -0.82
LIMS3-201ENST00000437679 DGAT2L7PQ6IED9 249 aa9.9□□□□□ -0.82
LIMS3-201ENST00000437679 Q6ZSA8 131 aa9.9□□□□□ -0.82
LIMS3-201ENST00000437679 ATP5L2Q7Z4Y8 100 aa9.9□□□□□ -0.82
LIMS3-201ENST00000437679 OR5A1Q8NGJ0 315 aa9.9□□□□□ -0.82
LIMS3-201ENST00000437679 KIR2DL4Q99706 377 aa9.9□□□□□ -0.82
LIMS3-201ENST00000437679 PCLOQ9Y6V0 5065 aa9.89□□□□□ -0.83
LIMS3-201ENST00000437679 ABCA13Q86UQ4 5058 aa9.89□□□□□ -0.83
LIMS3-201ENST00000437679 IFITM2Q01629 132 aa9.89□□□□□ -0.83
LIMS3-201ENST00000437679 C20orf78Q9BR46 151 aa9.89□□□□□ -0.83
LIMS3-201ENST00000437679 TRBV24-1A0A075B6N3 115 aa9.88□□□□□ -0.83
LIMS3-201ENST00000437679 hDV102S1A0JD36 115 aa9.88□□□□□ -0.83
LIMS3-201ENST00000437679 GAGE12HA6NDE8 117 aa9.88□□□□□ -0.83
LIMS3-201ENST00000437679 FAM229AH3BQW9 127 aa9.88□□□□□ -0.83
LIMS3-201ENST00000437679 SMAGPQ0VAQ4 97 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms