RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 P0DMU3 169 aa9.19□□□□□ -0.94
CCDC88A-207ENST00000436346 FAM231AP0DMU4 169 aa9.19□□□□□ -0.94
CCDC88A-207ENST00000436346 FAM231CP0DMU5 169 aa9.19□□□□□ -0.94
CCDC88A-207ENST00000436346 SIRPDQ9H106 197 aa9.19□□□□□ -0.94
CCDC88A-207ENST00000436346 SEC61GP60059 68 aa9.19□□□□□ -0.94
CCDC88A-207ENST00000436346 LOXL1Q08397 574 aaPredicted RBP9.19□□□□□ -0.94
CCDC88A-207ENST00000436346 A0A087WZ39 114 aa9.19□□□□□ -0.94
CCDC88A-207ENST00000436346 A4D1N5 150 aa9.19□□□□□ -0.94
CCDC88A-207ENST00000436346 ZNF843Q8N446 348 aa9.19□□□□□ -0.94
CCDC88A-207ENST00000436346 NTN5Q8WTR8 489 aaPredicted RBP9.18□□□□□ -0.94
CCDC88A-207ENST00000436346 CLEC2BQ92478 149 aa9.18□□□□□ -0.94
CCDC88A-207ENST00000436346 ODF3L1Q8IXM7 274 aa9.18□□□□□ -0.94
CCDC88A-207ENST00000436346 KIR2DL5BQ8NHK3 375 aa9.18□□□□□ -0.94
CCDC88A-207ENST00000436346 DEFB131BA0A096LNP1 70 aa9.18□□□□□ -0.94
CCDC88A-207ENST00000436346 E7EUB6 86 aa9.18□□□□□ -0.94
CCDC88A-207ENST00000436346 FAM167A-AS1Q96KT0 104 aa9.18□□□□□ -0.94
CCDC88A-207ENST00000436346 CCDC140Q96MF4 163 aa9.18□□□□□ -0.94
CCDC88A-207ENST00000436346 A0A0J9YX75 114 aa9.17□□□□□ -0.94
CCDC88A-207ENST00000436346 PRO0255Q9UI72 69 aa9.17□□□□□ -0.94
CCDC88A-207ENST00000436346 NPSP0C0P6 89 aa9.17□□□□□ -0.94
CCDC88A-207ENST00000436346 TRBV6-1A0A0K0K1D8 114 aa9.17□□□□□ -0.94
CCDC88A-207ENST00000436346 REG3AQ06141 175 aa9.17□□□□□ -0.94
CCDC88A-207ENST00000436346 ACYP1P07311 99 aa9.17□□□□□ -0.94
CCDC88A-207ENST00000436346 IGLV2-14P01704 120 aa9.17□□□□□ -0.94
CCDC88A-207ENST00000436346 COX7BP24311 80 aa9.17□□□□□ -0.94
CCDC88A-207ENST00000436346 FAM222AQ5U5X8 452 aa9.17□□□□□ -0.94
CCDC88A-207ENST00000436346 TRBV10-2A0A0K0K1G8 114 aa9.17□□□□□ -0.94
CCDC88A-207ENST00000436346 Q6ZUT4 128 aa9.16□□□□□ -0.94
CCDC88A-207ENST00000436346 TMEM256-PLSCR3K7ERE1 68 aa9.16□□□□□ -0.94
CCDC88A-207ENST00000436346 LECT2O14960 151 aa9.16□□□□□ -0.94
CCDC88A-207ENST00000436346 AKAP13Q12802 2813 aa9.16□□□□□ -0.94
CCDC88A-207ENST00000436346 HECTD1Q9ULT8 2610 aa9.16□□□□□ -0.94
CCDC88A-207ENST00000436346 FLNBO75369 2602 aaKnown RBP9.16□□□□□ -0.94
CCDC88A-207ENST00000436346 MIR7-3HGQ8N6C7 128 aa9.16□□□□□ -0.94
CCDC88A-207ENST00000436346 A6NDX4 124 aa9.15□□□□□ -0.94
CCDC88A-207ENST00000436346 C19orf84I3L1E1 186 aa9.15□□□□□ -0.94
CCDC88A-207ENST00000436346 PATE2Q6UY27 113 aa9.15□□□□□ -0.95
CCDC88A-207ENST00000436346 LYPD6BQ8NI32 183 aa9.15□□□□□ -0.95
CCDC88A-207ENST00000436346 PSMB8P28062 276 aa9.15□□□□□ -0.95
CCDC88A-207ENST00000436346 IL15RAQ13261 267 aa9.15□□□□□ -0.95
CCDC88A-207ENST00000436346 Q6YL49 198 aa9.15□□□□□ -0.95
CCDC88A-207ENST00000436346 FBXL19-AS1Q494R0 122 aa9.14□□□□□ -0.95
CCDC88A-207ENST00000436346 LINC00173Q6ZV60 143 aa9.14□□□□□ -0.95
CCDC88A-207ENST00000436346 ZFAND2AQ8N6M9 145 aa9.14□□□□□ -0.95
CCDC88A-207ENST00000436346 LYRM9A8MSI8 78 aa9.14□□□□□ -0.95
CCDC88A-207ENST00000436346 IGKV2D-26A0A0A0MRZ7 120 aa9.14□□□□□ -0.95
CCDC88A-207ENST00000436346 Q6ZTI0 123 aa9.14□□□□□ -0.95
CCDC88A-207ENST00000436346 MED14OSP0DP75 135 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 C7orf33Q8WU49 177 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 IGHV1-58A0A0C4DH39 117 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 IGLV1-47P01700 117 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 MAST4O15021 2626 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 ODF3BA8MYP8 253 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 LY6G6DO95868 133 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 TP53TG3Q9ULZ0 132 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 FAM236AA0A1B0GUQ0 79 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 FAM236BA0A1B0GV22 79 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 C11orf86A6NJI1 115 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 TNFRSF13BO14836 293 aaPredicted RBP9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 CEMP1Q6PRD7 247 aaPredicted RBP9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 HIGD2AQ9BW72 106 aa9.13□□□□□ -0.95
CCDC88A-207ENST00000436346 A0A0B4J2C4 111 aa9.12□□□□□ -0.95
CCDC88A-207ENST00000436346 UBE2D1P51668 147 aa9.12□□□□□ -0.95
CCDC88A-207ENST00000436346 LRRC75A-AS1Q8N1F1 130 aa9.12□□□□□ -0.95
CCDC88A-207ENST00000436346 ATRQ13535 2644 aa9.12□□□□□ -0.95
CCDC88A-207ENST00000436346 FAM19A5Q7Z5A7 132 aaPredicted RBP9.12□□□□□ -0.95
CCDC88A-207ENST00000436346 LINC01548A6NM66 108 aa9.12□□□□□ -0.95
CCDC88A-207ENST00000436346 NFE4Q86UQ8 179 aa9.12□□□□□ -0.95
CCDC88A-207ENST00000436346 CITED1Q99966 193 aa9.12□□□□□ -0.95
CCDC88A-207ENST00000436346 CHCHD10Q8WYQ3 142 aaPredicted RBP9.12□□□□□ -0.95
CCDC88A-207ENST00000436346 CASC2Q6XLA1 102 aa9.11□□□□□ -0.95
CCDC88A-207ENST00000436346 HIST2H2BDQ6DRA6 164 aa9.11□□□□□ -0.95
CCDC88A-207ENST00000436346 SMIM9A6NGZ8 99 aa9.11□□□□□ -0.95
CCDC88A-207ENST00000436346 FOXI1Q12951 378 aa9.11□□□□□ -0.95
CCDC88A-207ENST00000436346 LINC00467Q9BRT7 94 aa9.11□□□□□ -0.95
CCDC88A-207ENST00000436346 C20orf173Q96LM9 149 aa9.1□□□□□ -0.95
CCDC88A-207ENST00000436346 M0R2N4 97 aa9.1□□□□□ -0.95
CCDC88A-207ENST00000436346 TRBV10-1A0A0K0K1A3 114 aa9.1□□□□□ -0.95
CCDC88A-207ENST00000436346 ODF1Q14990 250 aa9.1□□□□□ -0.95
CCDC88A-207ENST00000436346 UFSP1Q6NVU6 142 aa9.1□□□□□ -0.95
CCDC88A-207ENST00000436346 SHISA2Q6UWI4 295 aa9.1□□□□□ -0.95
CCDC88A-207ENST00000436346 ATOX1O00244 68 aa9.09□□□□□ -0.95
CCDC88A-207ENST00000436346 CFAP46Q8IYW2 2715 aa9.09□□□□□ -0.95
CCDC88A-207ENST00000436346 UBE2D4Q9Y2X8 147 aa9.09□□□□□ -0.95
CCDC88A-207ENST00000436346 JMJD7-PLA2G4BH0Y9G9 81 aa9.09□□□□□ -0.95
CCDC88A-207ENST00000436346 MIAQ16674 131 aa9.09□□□□□ -0.95
CCDC88A-207ENST00000436346 FAM19A1Q7Z5A9 133 aa9.09□□□□□ -0.95
CCDC88A-207ENST00000436346 A0A096LNI7 61 aa9.09□□□□□ -0.96
CCDC88A-207ENST00000436346 CRYGBP07316 175 aa9.09□□□□□ -0.96
CCDC88A-207ENST00000436346 FXYD2P54710 66 aa9.09□□□□□ -0.96
CCDC88A-207ENST00000436346 IGLV2-18A0A075B6J9 118 aa9.08□□□□□ -0.96
CCDC88A-207ENST00000436346 WISP2O76076 250 aa9.08□□□□□ -0.96
CCDC88A-207ENST00000436346 TEN1Q86WV5 123 aa9.08□□□□□ -0.96
CCDC88A-207ENST00000436346 LINC00482Q8N8I6 264 aa9.08□□□□□ -0.96
CCDC88A-207ENST00000436346 IGKV1D-37A0A075B6S9 117 aa9.08□□□□□ -0.96
CCDC88A-207ENST00000436346 LMO4P61968 165 aa9.08□□□□□ -0.96
CCDC88A-207ENST00000436346 DEFB114Q30KQ6 69 aa9.08□□□□□ -0.96
CCDC88A-207ENST00000436346 UPK3BQ9BT76 320 aa9.08□□□□□ -0.96
CCDC88A-207ENST00000436346 LY6G6CO95867 125 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms