RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 RHODO00212 210 aa13.52□□□□□ -0.24
CLK1-205ENST00000434813 UBE2D1P51668 147 aa13.52□□□□□ -0.24
CLK1-205ENST00000434813 CFAP126Q5VTH2 177 aa13.52□□□□□ -0.24
CLK1-205ENST00000434813 LINC01587Q99440 93 aa13.52□□□□□ -0.24
CLK1-205ENST00000434813 SPXQ9BT56 116 aa13.52□□□□□ -0.24
CLK1-205ENST00000434813 ODF3L2Q3SX64 289 aa13.52□□□□□ -0.25
CLK1-205ENST00000434813 TNFRSF18Q9Y5U5 241 aa13.52□□□□□ -0.25
CLK1-205ENST00000434813 MAST4O15021 2626 aa13.52□□□□□ -0.25
CLK1-205ENST00000434813 NACAE9PAV3 2078 aa13.51□□□□□ -0.25
CLK1-205ENST00000434813 CD28P10747 220 aa13.51□□□□□ -0.25
CLK1-205ENST00000434813 ZNF22P17026 224 aaPredicted RBP13.51□□□□□ -0.25
CLK1-205ENST00000434813 ZNF418Q8TF45 676 aaPredicted RBP13.51□□□□□ -0.25
CLK1-205ENST00000434813 VPS25Q9BRG1 176 aa13.51□□□□□ -0.25
CLK1-205ENST00000434813 VCX2Q9H322 139 aa13.51□□□□□ -0.25
CLK1-205ENST00000434813 LGALS3P17931 250 aaKnown RBP13.51□□□□□ -0.25
CLK1-205ENST00000434813 CRYBA4P53673 196 aa13.51□□□□□ -0.25
CLK1-205ENST00000434813 BEAN1Q3B7T3 259 aa13.51□□□□□ -0.25
CLK1-205ENST00000434813 LEPROTO15243 131 aa13.5□□□□□ -0.25
CLK1-205ENST00000434813 Q6ZSN1 163 aa13.49□□□□□ -0.25
CLK1-205ENST00000434813 SLC25A29Q8N8R3 303 aa13.49□□□□□ -0.25
CLK1-205ENST00000434813 SMR3AQ99954 134 aa13.49□□□□□ -0.25
CLK1-205ENST00000434813 IGHV3-53P01767 116 aa13.49□□□□□ -0.25
CLK1-205ENST00000434813 RNASE1P07998 156 aaKnown RBP13.49□□□□□ -0.25
CLK1-205ENST00000434813 FAM104AQ969W3 186 aa13.49□□□□□ -0.25
CLK1-205ENST00000434813 A0A0J9YXV3 536 aa13.48□□□□□ -0.25
CLK1-205ENST00000434813 PCP4P48539 62 aa13.48□□□□□ -0.25
CLK1-205ENST00000434813 MRPL16Q9NX20 251 aaKnown RBP13.48□□□□□ -0.25
CLK1-205ENST00000434813 PGPEP1Q9NXJ5 209 aa13.48□□□□□ -0.25
CLK1-205ENST00000434813 CCL24O00175 119 aa13.47□□□□□ -0.25
CLK1-205ENST00000434813 RS1O15537 224 aa13.47□□□□□ -0.25
CLK1-205ENST00000434813 IGHV3-30P01768 117 aa13.47□□□□□ -0.25
CLK1-205ENST00000434813 IGHV3-30-5P0DP03 117 aa13.47□□□□□ -0.25
CLK1-205ENST00000434813 DNAJC30Q96LL9 226 aa13.47□□□□□ -0.25
CLK1-205ENST00000434813 CUBNO60494 3623 aa13.47□□□□□ -0.25
CLK1-205ENST00000434813 G3V4G9 280 aa13.47□□□□□ -0.25
CLK1-205ENST00000434813 F8W1H4 67 aa13.46□□□□□ -0.25
CLK1-205ENST00000434813 STHQ8IWL8 128 aa13.46□□□□□ -0.25
CLK1-205ENST00000434813 CHCHD7Q9BUK0 85 aa13.46□□□□□ -0.25
CLK1-205ENST00000434813 SPANXA1Q9NS26 97 aa13.46□□□□□ -0.25
CLK1-205ENST00000434813 Q9UF83 564 aa13.46□□□□□ -0.25
CLK1-205ENST00000434813 A0A1W2PRX2 142 aa13.46□□□□□ -0.26
CLK1-205ENST00000434813 MRPS36P82909 103 aaKnown RBP13.46□□□□□ -0.26
CLK1-205ENST00000434813 C11orf44Q8N8P7 122 aa13.46□□□□□ -0.26
CLK1-205ENST00000434813 XCL2Q9UBD3 114 aa13.46□□□□□ -0.26
CLK1-205ENST00000434813 H3BMG7 143 aa13.45□□□□□ -0.26
CLK1-205ENST00000434813 LY6G6DO95868 133 aa13.45□□□□□ -0.26
CLK1-205ENST00000434813 HILS1P60008 231 aa13.45□□□□□ -0.26
CLK1-205ENST00000434813 IL17DQ8TAD2 202 aa13.45□□□□□ -0.26
CLK1-205ENST00000434813 UBE2D4Q9Y2X8 147 aa13.44□□□□□ -0.26
CLK1-205ENST00000434813 TSPAN13O95857 204 aa13.44□□□□□ -0.26
CLK1-205ENST00000434813 NDUFA11Q86Y39 141 aa13.44□□□□□ -0.26
CLK1-205ENST00000434813 C1orf158Q8N1D5 194 aa13.44□□□□□ -0.26
CLK1-205ENST00000434813 NF1P21359 2839 aa13.44□□□□□ -0.26
CLK1-205ENST00000434813 HIVEP2P31629 2446 aa13.43□□□□□ -0.26
CLK1-205ENST00000434813 AZU1P20160 251 aa13.42□□□□□ -0.26
CLK1-205ENST00000434813 CEMP1Q6PRD7 247 aaPredicted RBP13.42□□□□□ -0.26
CLK1-205ENST00000434813 C16orf95Q9H693 158 aa13.42□□□□□ -0.26
CLK1-205ENST00000434813 TSSC4Q9Y5U2 329 aaPredicted RBP13.42□□□□□ -0.26
CLK1-205ENST00000434813 MTORP42345 2549 aa13.42□□□□□ -0.26
CLK1-205ENST00000434813 APOMO95445 188 aa13.42□□□□□ -0.26
CLK1-205ENST00000434813 LINC01006Q8NI28 216 aa13.42□□□□□ -0.26
CLK1-205ENST00000434813 CITED2Q99967 270 aaPredicted RBP13.42□□□□□ -0.26
CLK1-205ENST00000434813 IGHV3-64A0A075B6Q5 118 aa13.41□□□□□ -0.26
CLK1-205ENST00000434813 TEX48A0A1B0GUV7 120 aa13.41□□□□□ -0.26
CLK1-205ENST00000434813 COTL1Q14019 142 aa13.41□□□□□ -0.26
CLK1-205ENST00000434813 ANK3Q12955 4377 aaKnown RBP13.41□□□□□ -0.26
CLK1-205ENST00000434813 RPL24P83731 157 aaKnown RBP13.4□□□□□ -0.26
CLK1-205ENST00000434813 TIMM21Q9BVV7 248 aa13.4□□□□□ -0.26
CLK1-205ENST00000434813 PRO0461Q9UI25 63 aa13.4□□□□□ -0.26
CLK1-205ENST00000434813 HIVEP1P15822 2718 aa13.4□□□□□ -0.26
CLK1-205ENST00000434813 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.4□□□□□ -0.26
CLK1-205ENST00000434813 IGKV2-29A2NJV5 120 aaPredicted RBP13.4□□□□□ -0.26
CLK1-205ENST00000434813 CFC1BP0CG36 223 aa13.4□□□□□ -0.26
CLK1-205ENST00000434813 CFC1P0CG37 223 aa13.4□□□□□ -0.26
CLK1-205ENST00000434813 IGHV3-30-3P0DP02 117 aa13.4□□□□□ -0.26
CLK1-205ENST00000434813 UBE2D3P61077 147 aa13.4□□□□□ -0.26
CLK1-205ENST00000434813 UBE2D2P62837 147 aa13.4□□□□□ -0.26
CLK1-205ENST00000434813 WFDC2Q14508 124 aa13.4□□□□□ -0.26
CLK1-205ENST00000434813 GAGE13Q4V321 117 aa13.4□□□□□ -0.26
CLK1-205ENST00000434813 TINCRA0A1B0GVN0 87 aa13.39□□□□□ -0.27
CLK1-205ENST00000434813 C21orf62-AS1Q17RA5 79 aa13.39□□□□□ -0.27
CLK1-205ENST00000434813 C10orf126Q8N4M7 172 aa13.39□□□□□ -0.27
CLK1-205ENST00000434813 RNASE13Q5GAN3 156 aaKnown RBP13.39□□□□□ -0.27
CLK1-205ENST00000434813 LYRM7Q5U5X0 104 aa13.39□□□□□ -0.27
CLK1-205ENST00000434813 Q6ZUT4 128 aa13.39□□□□□ -0.27
CLK1-205ENST00000434813 IGHV3OR16-12A0A075B7B8 117 aa13.38□□□□□ -0.27
CLK1-205ENST00000434813 IGHV3-38A0A0C4DH36 116 aa13.38□□□□□ -0.27
CLK1-205ENST00000434813 TMEM238C9JI98 176 aa13.38□□□□□ -0.27
CLK1-205ENST00000434813 TRGV1A0A0A0MS02 117 aa13.37□□□□□ -0.27
CLK1-205ENST00000434813 IGHV1-58A0A0C4DH39 117 aa13.37□□□□□ -0.27
CLK1-205ENST00000434813 TMEM263Q8WUH6 116 aaKnown RBP13.37□□□□□ -0.27
CLK1-205ENST00000434813 A0A0J9YXY3 114 aa13.36□□□□□ -0.27
CLK1-205ENST00000434813 CMC4P56277 68 aaPredicted RBP13.36□□□□□ -0.27
CLK1-205ENST00000434813 PRO1854Q9UHT4 67 aa13.35□□□□□ -0.27
CLK1-205ENST00000434813 F8P00451 2351 aa13.35□□□□□ -0.27
CLK1-205ENST00000434813 LOC107984156A0A0G2JMH3 177 aa13.35□□□□□ -0.27
CLK1-205ENST00000434813 A4D1N5 150 aa13.35□□□□□ -0.27
CLK1-205ENST00000434813 ARL17AQ8IVW1 177 aa13.35□□□□□ -0.27
CLK1-205ENST00000434813 TRAV8-3A0A0A6YYJ7 113 aa13.34□□□□□ -0.27
CLK1-205ENST00000434813 INAFM1C9JVW0 142 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms