RNA–Protein interactions for RNA: ENST00000429846.1

MSH5-208, Transcript of mutS homolog 5, humanhuman

TSL 3

Gene MSH5, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-208ENST00000429846 UBE2L6O14933 153 aa9.52□□□□□ -0.89
MSH5-208ENST00000429846 IFNA1P01562 189 aa9.52□□□□□ -0.89
MSH5-208ENST00000429846 COTL1Q14019 142 aa9.52□□□□□ -0.89
MSH5-208ENST00000429846 FAT3Q8TDW7 4589 aa9.51□□□□□ -0.89
MSH5-208ENST00000429846 NTF3P20783 257 aa9.51□□□□□ -0.89
MSH5-208ENST00000429846 CTRLP40313 264 aa9.51□□□□□ -0.89
MSH5-208ENST00000429846 AMTP48728 403 aa9.51□□□□□ -0.89
MSH5-208ENST00000429846 LYZL1Q6UWQ5 148 aa9.51□□□□□ -0.89
MSH5-208ENST00000429846 Q6ZRU5 148 aa9.51□□□□□ -0.89
MSH5-208ENST00000429846 C9orf62Q8N4C0 152 aa9.51□□□□□ -0.89
MSH5-208ENST00000429846 CNFNQ9BYD5 112 aa9.51□□□□□ -0.89
MSH5-208ENST00000429846 TRBV20OR9-2A0A075B6H5 130 aa9.5□□□□□ -0.89
MSH5-208ENST00000429846 RAB19A4D1S5 217 aa9.5□□□□□ -0.89
MSH5-208ENST00000429846 SULT1A2P50226 295 aa9.5□□□□□ -0.89
MSH5-208ENST00000429846 GFRA4Q9GZZ7 299 aa9.5□□□□□ -0.89
MSH5-208ENST00000429846 BCL2P10415 239 aa9.49□□□□□ -0.89
MSH5-208ENST00000429846 CFAP161Q6P656 301 aa9.49□□□□□ -0.89
MSH5-208ENST00000429846 SPACA4Q8TDM5 124 aa9.49□□□□□ -0.89
MSH5-208ENST00000429846 MED9Q9NWA0 146 aa9.49□□□□□ -0.89
MSH5-208ENST00000429846 TAGLN2P37802 199 aaKnown RBP9.48□□□□□ -0.89
MSH5-208ENST00000429846 PKHD1L1Q86WI1 4243 aa9.48□□□□□ -0.89
MSH5-208ENST00000429846 A0A087WYN8 130 aa9.47□□□□□ -0.89
MSH5-208ENST00000429846 SLPIP03973 132 aa9.47□□□□□ -0.89
MSH5-208ENST00000429846 TWIST1Q15672 202 aa9.47□□□□□ -0.89
MSH5-208ENST00000429846 NUDT10Q8NFP7 164 aa9.47□□□□□ -0.89
MSH5-208ENST00000429846 NUDT11Q96G61 164 aa9.47□□□□□ -0.89
MSH5-208ENST00000429846 H7C423 109 aa9.46□□□□□ -0.9
MSH5-208ENST00000429846 NCR2O95944 276 aa9.46□□□□□ -0.9
MSH5-208ENST00000429846 C15orf56Q8N910 161 aa9.46□□□□□ -0.9
MSH5-208ENST00000429846 DPH3Q96FX2 82 aa9.46□□□□□ -0.9
MSH5-208ENST00000429846 RPP21Q9H633 154 aaKnown RBP9.46□□□□□ -0.9
MSH5-208ENST00000429846 GAGE12HA6NDE8 117 aa9.45□□□□□ -0.9
MSH5-208ENST00000429846 CHTF8P0CG12 524 aa9.45□□□□□ -0.9
MSH5-208ENST00000429846 MT1HL1P0DM35 61 aa9.45□□□□□ -0.9
MSH5-208ENST00000429846 AMMECR1LQ6DCA0 310 aa9.45□□□□□ -0.9
MSH5-208ENST00000429846 TEX261Q6UWH6 196 aa9.45□□□□□ -0.9
MSH5-208ENST00000429846 GATD1Q8NB37 220 aa9.45□□□□□ -0.9
MSH5-208ENST00000429846 C7orf33Q8WU49 177 aa9.45□□□□□ -0.9
MSH5-208ENST00000429846 PLAC8Q9NZF1 115 aa9.45□□□□□ -0.9
MSH5-208ENST00000429846 SMIM15Q7Z3B0 74 aa9.44□□□□□ -0.9
MSH5-208ENST00000429846 TRAV26-2A0A0B4J265 109 aa9.43□□□□□ -0.9
MSH5-208ENST00000429846 NDUFS6O75380 124 aaKnown RBP9.43□□□□□ -0.9
MSH5-208ENST00000429846 APCSP02743 223 aa9.43□□□□□ -0.9
MSH5-208ENST00000429846 RPS10P46783 165 aaKnown RBP9.43□□□□□ -0.9
MSH5-208ENST00000429846 SLC51BQ86UW2 128 aa9.43□□□□□ -0.9
MSH5-208ENST00000429846 RNASE7Q9H1E1 156 aaKnown RBP9.43□□□□□ -0.9
MSH5-208ENST00000429846 UBR4Q5T4S7 5183 aa9.43□□□□□ -0.9
MSH5-208ENST00000429846 GVQW2A0A096LPI5 108 aaPredicted RBP9.42□□□□□ -0.9
MSH5-208ENST00000429846 IGKV3OR2-268A0A0C4DH90 116 aa9.42□□□□□ -0.9
MSH5-208ENST00000429846 K7EN84 100 aa9.42□□□□□ -0.9
MSH5-208ENST00000429846 ZNF25P17030 456 aaPredicted RBP9.42□□□□□ -0.9
MSH5-208ENST00000429846 COX6A2Q02221 97 aa9.42□□□□□ -0.9
MSH5-208ENST00000429846 Q6ZNX1 250 aa9.42□□□□□ -0.9
MSH5-208ENST00000429846 CHCHD10Q8WYQ3 142 aaPredicted RBP9.42□□□□□ -0.9
MSH5-208ENST00000429846 PKIGQ9Y2B9 76 aa9.42□□□□□ -0.9
MSH5-208ENST00000429846 SDHAF1A6NFY7 115 aa9.41□□□□□ -0.9
MSH5-208ENST00000429846 RNASEKQ6P5S7 137 aaKnown RBP9.41□□□□□ -0.9
MSH5-208ENST00000429846 TCTE3Q8IZS6 198 aa9.41□□□□□ -0.9
MSH5-208ENST00000429846 RPL39LQ96EH5 51 aaKnown RBP9.41□□□□□ -0.9
MSH5-208ENST00000429846 FAM210AQ96ND0 272 aa9.41□□□□□ -0.9
MSH5-208ENST00000429846 PHOX2AO14813 284 aa9.4□□□□□ -0.9
MSH5-208ENST00000429846 FGF6P10767 208 aa9.4□□□□□ -0.9
MSH5-208ENST00000429846 HIGD2BQ4VC39 106 aa9.4□□□□□ -0.9
MSH5-208ENST00000429846 OCC1Q8TAD7 63 aa9.4□□□□□ -0.9
MSH5-208ENST00000429846 GTSF1Q8WW33 167 aa9.4□□□□□ -0.9
MSH5-208ENST00000429846 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.39□□□□□ -0.91
MSH5-208ENST00000429846 IGKV2-29A2NJV5 120 aaPredicted RBP9.39□□□□□ -0.91
MSH5-208ENST00000429846 TMEM250H0YL14 139 aa9.39□□□□□ -0.91
MSH5-208ENST00000429846 MAJINQ3KP22 176 aa9.39□□□□□ -0.91
MSH5-208ENST00000429846 FAM231DQ6ZW35 169 aa9.39□□□□□ -0.91
MSH5-208ENST00000429846 OR5A1Q8NGJ0 315 aa9.39□□□□□ -0.91
MSH5-208ENST00000429846 BTF3L4Q96K17 158 aa9.39□□□□□ -0.91
MSH5-208ENST00000429846 LINC00474Q9P2X8 69 aa9.39□□□□□ -0.91
MSH5-208ENST00000429846 IGKV2-24A0A0C4DH68 120 aa9.38□□□□□ -0.91
MSH5-208ENST00000429846 TRBV6-5A0A0K0K1A5 114 aa9.38□□□□□ -0.91
MSH5-208ENST00000429846 A8MWL6 223 aa9.38□□□□□ -0.91
MSH5-208ENST00000429846 I3L3M4 83 aa9.38□□□□□ -0.91
MSH5-208ENST00000429846 FOXI1Q12951 378 aa9.38□□□□□ -0.91
MSH5-208ENST00000429846 CT83Q5H943 113 aa9.38□□□□□ -0.91
MSH5-208ENST00000429846 PRSS3P2Q8NHM4 247 aa9.38□□□□□ -0.91
MSH5-208ENST00000429846 TMEM101Q96IK0 257 aa9.38□□□□□ -0.91
MSH5-208ENST00000429846 GATCO43716 136 aaKnown RBP9.37□□□□□ -0.91
MSH5-208ENST00000429846 PRR3P79522 188 aaKnown RBP9.37□□□□□ -0.91
MSH5-208ENST00000429846 STPG4Q8N801 248 aa9.37□□□□□ -0.91
MSH5-208ENST00000429846 PMCHP20382 165 aa9.36□□□□□ -0.91
MSH5-208ENST00000429846 FOXA3P55318 350 aaPredicted RBP9.36□□□□□ -0.91
MSH5-208ENST00000429846 BORCS7Q96B45 105 aa9.36□□□□□ -0.91
MSH5-208ENST00000429846 A0A096LNI7 61 aa9.35□□□□□ -0.91
MSH5-208ENST00000429846 IGHV1-58A0A0C4DH39 117 aa9.35□□□□□ -0.91
MSH5-208ENST00000429846 ESDP10768 282 aa9.35□□□□□ -0.91
MSH5-208ENST00000429846 XCL1P47992 114 aa9.35□□□□□ -0.91
MSH5-208ENST00000429846 MRAP2Q96G30 205 aa9.35□□□□□ -0.91
MSH5-208ENST00000429846 LINC00959A0A1B0GUT2 108 aa9.34□□□□□ -0.91
MSH5-208ENST00000429846 FAM231BA6NCW3 169 aa9.34□□□□□ -0.91
MSH5-208ENST00000429846 CCL25O15444 150 aa9.34□□□□□ -0.91
MSH5-208ENST00000429846 BLOC1S1P78537 153 aa9.34□□□□□ -0.91
MSH5-208ENST00000429846 MRPL52Q86TS9 123 aaKnown RBP9.34□□□□□ -0.91
MSH5-208ENST00000429846 CARD19Q96LW7 228 aa9.34□□□□□ -0.91
MSH5-208ENST00000429846 LINC01600Q96MT4 127 aa9.34□□□□□ -0.91
MSH5-208ENST00000429846 ST20Q9HBF5 79 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms