RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 MED9Q9NWA0 146 aa9.28□□□□□ -0.92
SDC1-204ENST00000429035 HMCN2Q8NDA2 5059 aa9.27□□□□□ -0.93
SDC1-204ENST00000429035 F2Z2F3 143 aa9.27□□□□□ -0.93
SDC1-204ENST00000429035 MEF2BQ02080 365 aaPredicted RBP9.27□□□□□ -0.93
SDC1-204ENST00000429035 PGLYRP4Q96LB8 373 aa9.27□□□□□ -0.93
SDC1-204ENST00000429035 NIT2Q9NQR4 276 aa9.27□□□□□ -0.93
SDC1-204ENST00000429035 A0A1B0GUV1 79 aa9.26□□□□□ -0.93
SDC1-204ENST00000429035 GAGE12HA6NDE8 117 aa9.26□□□□□ -0.93
SDC1-204ENST00000429035 NTF3P20783 257 aa9.26□□□□□ -0.93
SDC1-204ENST00000429035 TWIST1Q15672 202 aa9.26□□□□□ -0.93
SDC1-204ENST00000429035 HIGD2BQ4VC39 106 aa9.26□□□□□ -0.93
SDC1-204ENST00000429035 SMIM12Q96EX1 92 aa9.26□□□□□ -0.93
SDC1-204ENST00000429035 BIN3Q9NQY0 253 aa9.26□□□□□ -0.93
SDC1-204ENST00000429035 A0A087WYN8 130 aa9.25□□□□□ -0.93
SDC1-204ENST00000429035 TRAV26-2A0A0B4J265 109 aa9.25□□□□□ -0.93
SDC1-204ENST00000429035 PDE6DO43924 150 aa9.25□□□□□ -0.93
SDC1-204ENST00000429035 AMMECR1LQ6DCA0 310 aa9.25□□□□□ -0.93
SDC1-204ENST00000429035 EIF5AL1Q6IS14 154 aaKnown RBP9.25□□□□□ -0.93
SDC1-204ENST00000429035 TRBV20OR9-2A0A075B6H5 130 aa9.24□□□□□ -0.93
SDC1-204ENST00000429035 TRAV1-1A0A0B4J248 108 aa9.24□□□□□ -0.93
SDC1-204ENST00000429035 BCL2P10415 239 aa9.24□□□□□ -0.93
SDC1-204ENST00000429035 CTRLP40313 264 aa9.24□□□□□ -0.93
SDC1-204ENST00000429035 RNASEKQ6P5S7 137 aaKnown RBP9.24□□□□□ -0.93
SDC1-204ENST00000429035 SPACA4Q8TDM5 124 aa9.24□□□□□ -0.93
SDC1-204ENST00000429035 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.23□□□□□ -0.93
SDC1-204ENST00000429035 IGKV2-24A0A0C4DH68 120 aa9.23□□□□□ -0.93
SDC1-204ENST00000429035 IGKV2-29A2NJV5 120 aaPredicted RBP9.23□□□□□ -0.93
SDC1-204ENST00000429035 SLPIP03973 132 aa9.23□□□□□ -0.93
SDC1-204ENST00000429035 CIRBPQ14011 172 aaKnown RBP9.23□□□□□ -0.93
SDC1-204ENST00000429035 C15orf56Q8N910 161 aa9.23□□□□□ -0.93
SDC1-204ENST00000429035 NUDT10Q8NFP7 164 aa9.23□□□□□ -0.93
SDC1-204ENST00000429035 NUDT11Q96G61 164 aa9.23□□□□□ -0.93
SDC1-204ENST00000429035 RNASE7Q9H1E1 156 aaKnown RBP9.23□□□□□ -0.93
SDC1-204ENST00000429035 RPP21Q9H633 154 aaKnown RBP9.23□□□□□ -0.93
SDC1-204ENST00000429035 PHOX2AO14813 284 aa9.22□□□□□ -0.93
SDC1-204ENST00000429035 APCSP02743 223 aa9.22□□□□□ -0.93
SDC1-204ENST00000429035 CFAP161Q6P656 301 aa9.22□□□□□ -0.93
SDC1-204ENST00000429035 Q6ZNX1 250 aa9.22□□□□□ -0.93
SDC1-204ENST00000429035 Q6ZRU5 148 aa9.22□□□□□ -0.93
SDC1-204ENST00000429035 SMIM15Q7Z3B0 74 aa9.22□□□□□ -0.93
SDC1-204ENST00000429035 GATD1Q8NB37 220 aa9.22□□□□□ -0.93
SDC1-204ENST00000429035 C7orf33Q8WU49 177 aa9.22□□□□□ -0.93
SDC1-204ENST00000429035 RPL39LQ96EH5 51 aaKnown RBP9.22□□□□□ -0.93
SDC1-204ENST00000429035 RNF185Q96GF1 192 aa9.22□□□□□ -0.93
SDC1-204ENST00000429035 COX6A2Q02221 97 aa9.21□□□□□ -0.94
SDC1-204ENST00000429035 MAJINQ3KP22 176 aa9.21□□□□□ -0.94
SDC1-204ENST00000429035 CHCHD10Q8WYQ3 142 aaPredicted RBP9.21□□□□□ -0.94
SDC1-204ENST00000429035 C9orf62Q8N4C0 152 aa9.2□□□□□ -0.94
SDC1-204ENST00000429035 MT1HL1P0DM35 61 aa9.19□□□□□ -0.94
SDC1-204ENST00000429035 RPS10P46783 165 aaKnown RBP9.19□□□□□ -0.94
SDC1-204ENST00000429035 GTSF1Q8WW33 167 aa9.19□□□□□ -0.94
SDC1-204ENST00000429035 K7EN84 100 aa9.18□□□□□ -0.94
SDC1-204ENST00000429035 NDUFS6O75380 124 aaKnown RBP9.18□□□□□ -0.94
SDC1-204ENST00000429035 PRSS3P2Q8NHM4 247 aa9.18□□□□□ -0.94
SDC1-204ENST00000429035 LYPD6BQ8NI32 183 aa9.18□□□□□ -0.94
SDC1-204ENST00000429035 CNFNQ9BYD5 112 aa9.18□□□□□ -0.94
SDC1-204ENST00000429035 SDHAF1A6NFY7 115 aa9.17□□□□□ -0.94
SDC1-204ENST00000429035 NCR2O95944 276 aa9.17□□□□□ -0.94
SDC1-204ENST00000429035 FGF6P10767 208 aa9.17□□□□□ -0.94
SDC1-204ENST00000429035 CEBPGP53567 150 aa9.17□□□□□ -0.94
SDC1-204ENST00000429035 FOXA3P55318 350 aaPredicted RBP9.17□□□□□ -0.94
SDC1-204ENST00000429035 STPG4Q8N801 248 aa9.17□□□□□ -0.94
SDC1-204ENST00000429035 BTF3L4Q96K17 158 aa9.17□□□□□ -0.94
SDC1-204ENST00000429035 PLAC8Q9NZF1 115 aa9.17□□□□□ -0.94
SDC1-204ENST00000429035 GATCO43716 136 aaKnown RBP9.16□□□□□ -0.94
SDC1-204ENST00000429035 PMCHP20382 165 aa9.16□□□□□ -0.94
SDC1-204ENST00000429035 TAGLN2P37802 199 aaKnown RBP9.16□□□□□ -0.94
SDC1-204ENST00000429035 XCL1P47992 114 aa9.16□□□□□ -0.94
SDC1-204ENST00000429035 SLC51BQ86UW2 128 aa9.16□□□□□ -0.94
SDC1-204ENST00000429035 OCC1Q8TAD7 63 aa9.16□□□□□ -0.94
SDC1-204ENST00000429035 TMEM101Q96IK0 257 aa9.16□□□□□ -0.94
SDC1-204ENST00000429035 UBR4Q5T4S7 5183 aa9.16□□□□□ -0.94
SDC1-204ENST00000429035 A0A096LNI7 61 aa9.15□□□□□ -0.94
SDC1-204ENST00000429035 BORCS7Q96B45 105 aa9.15□□□□□ -0.94
SDC1-204ENST00000429035 TMEM242Q9NWH2 141 aa9.15□□□□□ -0.94
SDC1-204ENST00000429035 GVQW2A0A096LPI5 108 aaPredicted RBP9.14□□□□□ -0.95
SDC1-204ENST00000429035 H7C423 109 aa9.14□□□□□ -0.95
SDC1-204ENST00000429035 FOXI1Q12951 378 aa9.14□□□□□ -0.95
SDC1-204ENST00000429035 OR5A1Q8NGJ0 315 aa9.14□□□□□ -0.95
SDC1-204ENST00000429035 LINC00526Q96FQ7 95 aa9.14□□□□□ -0.95
SDC1-204ENST00000429035 I3L3M4 83 aa9.13□□□□□ -0.95
SDC1-204ENST00000429035 CCL25O15444 150 aa9.13□□□□□ -0.95
SDC1-204ENST00000429035 ZNF25P17030 456 aaPredicted RBP9.13□□□□□ -0.95
SDC1-204ENST00000429035 PRR3P79522 188 aaKnown RBP9.13□□□□□ -0.95
SDC1-204ENST00000429035 TEX261Q6UWH6 196 aa9.13□□□□□ -0.95
SDC1-204ENST00000429035 CARD19Q96LW7 228 aa9.13□□□□□ -0.95
SDC1-204ENST00000429035 A8MWL6 223 aa9.12□□□□□ -0.95
SDC1-204ENST00000429035 TCTE3Q8IZS6 198 aa9.12□□□□□ -0.95
SDC1-204ENST00000429035 MRAP2Q96G30 205 aa9.12□□□□□ -0.95
SDC1-204ENST00000429035 IGHV1-58A0A0C4DH39 117 aa9.11□□□□□ -0.95
SDC1-204ENST00000429035 LINC00959A0A1B0GUT2 108 aa9.11□□□□□ -0.95
SDC1-204ENST00000429035 ST20Q9HBF5 79 aa9.11□□□□□ -0.95
SDC1-204ENST00000429035 PKIGQ9Y2B9 76 aa9.11□□□□□ -0.95
SDC1-204ENST00000429035 GAS8-AS1O95177 125 aa9.1□□□□□ -0.95
SDC1-204ENST00000429035 TSHBP01222 138 aa9.1□□□□□ -0.95
SDC1-204ENST00000429035 SS18Q15532 418 aa9.1□□□□□ -0.95
SDC1-204ENST00000429035 ALKAL2Q6UX46 152 aa9.1□□□□□ -0.95
SDC1-204ENST00000429035 FAM231BA6NCW3 169 aa9.09□□□□□ -0.95
SDC1-204ENST00000429035 ZNF561-AS1K7EIQ3 104 aa9.09□□□□□ -0.95
SDC1-204ENST00000429035 FAM231DQ6ZW35 169 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms