RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 SPANXA1Q9NS26 97 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 VPREB3Q9UKI3 123 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 AKAP9Q99996 3911 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 TRAV8-3A0A0A6YYJ7 113 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 IGHV1-58A0A0C4DH39 117 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 TRBV30A0A0K0K1B3 111 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 TINCRA0A1B0GVN0 87 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 NHLRC4P0CG21 123 aaPredicted RBP7.16□□□□□ -1.26
CD44-206ENST00000415148 CD28P10747 220 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 DNAJC30Q96LL9 226 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 LINC00467Q9BRT7 94 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 SPANXDQ9BXN6 97 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 SPANXCQ9NY87 97 aa7.16□□□□□ -1.26
CD44-206ENST00000415148 RBMY1A1P0DJD3 496 aaKnown RBP7.15□□□□□ -1.26
CD44-206ENST00000415148 RBMY1CP0DJD4 496 aa7.15□□□□□ -1.26
CD44-206ENST00000415148 NPC2P61916 151 aa7.15□□□□□ -1.26
CD44-206ENST00000415148 RBMY1FQ15415 496 aaKnown RBP7.15□□□□□ -1.26
CD44-206ENST00000415148 ADAMTSL4-AS1Q5T5F5 129 aa7.15□□□□□ -1.26
CD44-206ENST00000415148 Q6YL49 198 aa7.15□□□□□ -1.26
CD44-206ENST00000415148 NTN5Q8WTR8 489 aaPredicted RBP7.15□□□□□ -1.26
CD44-206ENST00000415148 SPXQ9BT56 116 aa7.15□□□□□ -1.26
CD44-206ENST00000415148 TRAV4A0A0B4J268 109 aa7.15□□□□□ -1.27
CD44-206ENST00000415148 TEX49A0A1B0GTD5 131 aa7.15□□□□□ -1.27
CD44-206ENST00000415148 H3BMM0 161 aa7.15□□□□□ -1.27
CD44-206ENST00000415148 ATXN8Q156A1 80 aa7.15□□□□□ -1.27
CD44-206ENST00000415148 LITAFQ99732 161 aa7.15□□□□□ -1.27
CD44-206ENST00000415148 CITED1Q99966 193 aa7.15□□□□□ -1.27
CD44-206ENST00000415148 ZNF415Q09FC8 603 aa7.14□□□□□ -1.27
CD44-206ENST00000415148 DUX5Q96PT3 197 aa7.14□□□□□ -1.27
CD44-206ENST00000415148 ZNF702PQ9H963 129 aa7.14□□□□□ -1.27
CD44-206ENST00000415148 NACAE9PAV3 2078 aa7.14□□□□□ -1.27
CD44-206ENST00000415148 A0A096LNT2 108 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 TRIAP1O43715 76 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 SS18L2Q9UHA2 77 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 EPG5Q9HCE0 2579 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 KNCNA6PVL3 124 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 TIMM17BO60830 172 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 FSHBP01225 129 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 DEFB131AP59861 70 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 VSIG2Q96IQ7 327 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 DUX3Q96PT4 197 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 CHCHD7Q9BUK0 85 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 UBE2D4Q9Y2X8 147 aa7.13□□□□□ -1.27
CD44-206ENST00000415148 CREBBPQ92793 2442 aa7.12□□□□□ -1.27
CD44-206ENST00000415148 Q1RN00 199 aa7.12□□□□□ -1.27
CD44-206ENST00000415148 YAE1D1Q9NRH1 226 aa7.12□□□□□ -1.27
CD44-206ENST00000415148 PEMTQ9UBM1 199 aa7.12□□□□□ -1.27
CD44-206ENST00000415148 HTN1P15515 57 aa7.12□□□□□ -1.27
CD44-206ENST00000415148 MIAQ16674 131 aa7.12□□□□□ -1.27
CD44-206ENST00000415148 BEAN1Q3B7T3 259 aa7.12□□□□□ -1.27
CD44-206ENST00000415148 LINC01620Q4KN68 170 aa7.12□□□□□ -1.27
CD44-206ENST00000415148 ANAPC13Q9BS18 74 aa7.12□□□□□ -1.27
CD44-206ENST00000415148 NDUFA12Q9UI09 145 aa7.12□□□□□ -1.27
CD44-206ENST00000415148 IGHV3-53P01767 116 aa7.11□□□□□ -1.27
CD44-206ENST00000415148 IFITM1P13164 125 aa7.11□□□□□ -1.27
CD44-206ENST00000415148 TIRAPP58753 221 aa7.11□□□□□ -1.27
CD44-206ENST00000415148 ZFAND6Q6FIF0 208 aa7.11□□□□□ -1.27
CD44-206ENST00000415148 Q6ZSN1 163 aa7.11□□□□□ -1.27
CD44-206ENST00000415148 MXRA5Q9NR99 2828 aa7.11□□□□□ -1.27
CD44-206ENST00000415148 IGSF10Q6WRI0 2623 aa7.11□□□□□ -1.27
CD44-206ENST00000415148 TRBV10-2A0A0K0K1G8 114 aa7.11□□□□□ -1.27
CD44-206ENST00000415148 RPL13AP40429 203 aaKnown RBP7.11□□□□□ -1.27
CD44-206ENST00000415148 Q8N2B8 174 aa7.11□□□□□ -1.27
CD44-206ENST00000415148 DAND5Q8N907 189 aa7.11□□□□□ -1.27
CD44-206ENST00000415148 CLEC2BQ92478 149 aa7.11□□□□□ -1.27
CD44-206ENST00000415148 FLNCQ14315 2725 aa7.1□□□□□ -1.27
CD44-206ENST00000415148 RBMY1BA6NDE4 496 aaKnown RBP7.1□□□□□ -1.27
CD44-206ENST00000415148 RBMY1EA6NEQ0 496 aaKnown RBP7.1□□□□□ -1.27
CD44-206ENST00000415148 PRSS2P07478 247 aa7.1□□□□□ -1.27
CD44-206ENST00000415148 COX6CP09669 75 aa7.1□□□□□ -1.27
CD44-206ENST00000415148 RBMY1DP0C7P1 496 aaKnown RBP7.1□□□□□ -1.27
CD44-206ENST00000415148 RS1O15537 224 aa7.1□□□□□ -1.27
CD44-206ENST00000415148 SLURP1P55000 103 aa7.1□□□□□ -1.27
CD44-206ENST00000415148 TEX29Q8N6K0 151 aa7.1□□□□□ -1.27
CD44-206ENST00000415148 C11orf72Q8NBR9 251 aa7.1□□□□□ -1.27
CD44-206ENST00000415148 IGLV5-45A0A087WSX0 123 aa7.09□□□□□ -1.27
CD44-206ENST00000415148 B5MCH6 92 aa7.09□□□□□ -1.27
CD44-206ENST00000415148 CCDC179H3BU77 68 aa7.09□□□□□ -1.27
CD44-206ENST00000415148 ICOSQ9Y6W8 199 aa7.09□□□□□ -1.27
CD44-206ENST00000415148 H7C423 109 aa7.09□□□□□ -1.28
CD44-206ENST00000415148 C4orf3Q8WVX3 66 aa7.09□□□□□ -1.28
CD44-206ENST00000415148 LINC01587Q99440 93 aa7.09□□□□□ -1.28
CD44-206ENST00000415148 ZFYVE26Q68DK2 2539 aa7.09□□□□□ -1.28
CD44-206ENST00000415148 HIST2H2BDQ6DRA6 164 aa7.08□□□□□ -1.28
CD44-206ENST00000415148 FAM19A3Q7Z5A8 133 aa7.08□□□□□ -1.28
CD44-206ENST00000415148 MAP6D1Q9H9H5 199 aa7.08□□□□□ -1.28
CD44-206ENST00000415148 CFAP46Q8IYW2 2715 aa7.08□□□□□ -1.28
CD44-206ENST00000415148 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.08□□□□□ -1.28
CD44-206ENST00000415148 IGHV3-38A0A0C4DH36 116 aa7.08□□□□□ -1.28
CD44-206ENST00000415148 IGKV2-29A2NJV5 120 aaPredicted RBP7.08□□□□□ -1.28
CD44-206ENST00000415148 H3BT86 120 aa7.08□□□□□ -1.28
CD44-206ENST00000415148 NDUFA1O15239 70 aa7.08□□□□□ -1.28
CD44-206ENST00000415148 INSP01308 110 aa7.08□□□□□ -1.28
CD44-206ENST00000415148 CIRBPQ14011 172 aaKnown RBP7.08□□□□□ -1.28
CD44-206ENST00000415148 TTC32Q5I0X7 151 aa7.08□□□□□ -1.28
CD44-206ENST00000415148 TMEM61Q8N0U2 210 aa7.08□□□□□ -1.28
CD44-206ENST00000415148 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.08□□□□□ -1.28
CD44-206ENST00000415148 NBPF19A0A087WUL8 3843 aa7.07□□□□□ -1.28
CD44-206ENST00000415148 NDUFV3P56181 108 aaKnown RBP7.07□□□□□ -1.28
CD44-206ENST00000415148 NRGNQ92686 78 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms