RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TRPT1Q86TN4 253 aaKnown RBP9.81□□□□□ -0.84
VPS54-203ENST00000409558 NDUFA7O95182 113 aa9.81□□□□□ -0.84
VPS54-203ENST00000409558 TRGV11A0A075B6L2 103 aa9.8□□□□□ -0.84
VPS54-203ENST00000409558 A0A1B0GWB2 263 aa9.8□□□□□ -0.84
VPS54-203ENST00000409558 C9orf85Q96MD7 179 aa9.8□□□□□ -0.84
VPS54-203ENST00000409558 ESM1Q9NQ30 184 aa9.8□□□□□ -0.84
VPS54-203ENST00000409558 PEMTQ9UBM1 199 aa9.8□□□□□ -0.84
VPS54-203ENST00000409558 SPINK8P0C7L1 97 aa9.8□□□□□ -0.84
VPS54-203ENST00000409558 E9PLD3 99 aa9.8□□□□□ -0.84
VPS54-203ENST00000409558 I3L3M4 83 aa9.8□□□□□ -0.84
VPS54-203ENST00000409558 J3QQQ9 107 aa9.8□□□□□ -0.84
VPS54-203ENST00000409558 TRAV12-1A0A0B4J245 112 aa9.8□□□□□ -0.84
VPS54-203ENST00000409558 LINC01546A6NGU7 62 aa9.79□□□□□ -0.84
VPS54-203ENST00000409558 INSL3P51460 131 aa9.79□□□□□ -0.84
VPS54-203ENST00000409558 VWFP04275 2813 aa9.79□□□□□ -0.84
VPS54-203ENST00000409558 UFSP1Q6NVU6 142 aa9.79□□□□□ -0.84
VPS54-203ENST00000409558 TRAV13-1A0A0B4J241 112 aa9.79□□□□□ -0.84
VPS54-203ENST00000409558 CCL24O00175 119 aa9.78□□□□□ -0.84
VPS54-203ENST00000409558 GTSF1LQ9H1H1 148 aa9.78□□□□□ -0.84
VPS54-203ENST00000409558 HIGD1BQ9P298 99 aa9.78□□□□□ -0.84
VPS54-203ENST00000409558 GAGE12JA6NER3 117 aa9.78□□□□□ -0.84
VPS54-203ENST00000409558 GAGE4Q13068 117 aa9.78□□□□□ -0.84
VPS54-203ENST00000409558 GAGE5Q13069 117 aa9.78□□□□□ -0.84
VPS54-203ENST00000409558 DEFB114Q30KQ6 69 aa9.78□□□□□ -0.84
VPS54-203ENST00000409558 GAGE13Q4V321 117 aa9.78□□□□□ -0.84
VPS54-203ENST00000409558 TM2D2Q9BX73 214 aa9.78□□□□□ -0.84
VPS54-203ENST00000409558 LGALS9O00182 355 aa9.77□□□□□ -0.85
VPS54-203ENST00000409558 C20orf203Q8NBC4 194 aa9.77□□□□□ -0.85
VPS54-203ENST00000409558 NOP10Q9NPE3 64 aaKnown RBP9.77□□□□□ -0.85
VPS54-203ENST00000409558 TRBV7-3A0A075B6L6 115 aa9.77□□□□□ -0.85
VPS54-203ENST00000409558 TRBV27A0A0K0K1C4 114 aa9.77□□□□□ -0.85
VPS54-203ENST00000409558 MED14OSP0DP75 135 aa9.77□□□□□ -0.85
VPS54-203ENST00000409558 Q6ZTI0 123 aa9.77□□□□□ -0.85
VPS54-203ENST00000409558 PRSS47A8MTI9 375 aa9.76□□□□□ -0.85
VPS54-203ENST00000409558 IGLV4-3A0A075B6K6 122 aa9.76□□□□□ -0.85
VPS54-203ENST00000409558 GAGE7O76087 117 aa9.76□□□□□ -0.85
VPS54-203ENST00000409558 GAGE12FP0CL80 117 aa9.76□□□□□ -0.85
VPS54-203ENST00000409558 GAGE12GP0CL81 117 aa9.76□□□□□ -0.85
VPS54-203ENST00000409558 GAGE12IP0CL82 117 aa9.76□□□□□ -0.85
VPS54-203ENST00000409558 ZNF415Q09FC8 603 aa9.76□□□□□ -0.85
VPS54-203ENST00000409558 RRN3P1Q2M238 152 aa9.76□□□□□ -0.85
VPS54-203ENST00000409558 Q6ZUT4 128 aa9.76□□□□□ -0.85
VPS54-203ENST00000409558 LINC00467Q9BRT7 94 aa9.76□□□□□ -0.85
VPS54-203ENST00000409558 ODF3L2Q3SX64 289 aa9.75□□□□□ -0.85
VPS54-203ENST00000409558 GEMIN7Q9H840 131 aaKnown RBP9.75□□□□□ -0.85
VPS54-203ENST00000409558 TRGV2A0A075B6R0 118 aa9.75□□□□□ -0.85
VPS54-203ENST00000409558 M0R2P5 195 aa9.75□□□□□ -0.85
VPS54-203ENST00000409558 A0A0J9YY99 117 aa9.75□□□□□ -0.85
VPS54-203ENST00000409558 A0A096LPF7 62 aa9.75□□□□□ -0.85
VPS54-203ENST00000409558 A4D1N5 150 aa9.75□□□□□ -0.85
VPS54-203ENST00000409558 INSP01308 110 aa9.75□□□□□ -0.85
VPS54-203ENST00000409558 OR5A1Q8NGJ0 315 aa9.75□□□□□ -0.85
VPS54-203ENST00000409558 SMAGPQ0VAQ4 97 aa9.74□□□□□ -0.85
VPS54-203ENST00000409558 SAMD13Q5VXD3 122 aa9.74□□□□□ -0.85
VPS54-203ENST00000409558 COTL1Q14019 142 aa9.74□□□□□ -0.85
VPS54-203ENST00000409558 NXPH4O95158 308 aa9.74□□□□□ -0.85
VPS54-203ENST00000409558 ZNF22P17026 224 aaPredicted RBP9.74□□□□□ -0.85
VPS54-203ENST00000409558 CFAP126Q5VTH2 177 aa9.74□□□□□ -0.85
VPS54-203ENST00000409558 LOC100131303A0A0U1RQF7 123 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 OTOGQ6ZRI0 2925 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 DEFB130BP0DP73 79 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 DEFB130AP0DP74 79 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 MUSTN1Q8IVN3 82 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 TMEM141Q96I45 108 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 TRBV7-9A0A0J9YWB2 115 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 C4orf3Q8WVX3 66 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 TIMM21Q9BVV7 248 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 TSSC4Q9Y5U2 329 aaPredicted RBP9.73□□□□□ -0.85
VPS54-203ENST00000409558 TMEM238LA0A1B0GVL6 79 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 A6NJY4 79 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 BRI3O95415 125 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 TSPAN13O95857 204 aa9.73□□□□□ -0.85
VPS54-203ENST00000409558 TMEM89A2RUT3 159 aa9.72□□□□□ -0.85
VPS54-203ENST00000409558 DEFB4AO15263 64 aa9.72□□□□□ -0.85
VPS54-203ENST00000409558 RHODO00212 210 aa9.72□□□□□ -0.85
VPS54-203ENST00000409558 TIMM17AQ99595 171 aa9.72□□□□□ -0.85
VPS54-203ENST00000409558 C11orf68Q9H3H3 251 aaKnown RBP9.71□□□□□ -0.85
VPS54-203ENST00000409558 TOMM7Q9P0U1 55 aa9.71□□□□□ -0.85
VPS54-203ENST00000409558 IGHV3-30-3P0DP02 117 aa9.71□□□□□ -0.86
VPS54-203ENST00000409558 CIDEAO60543 219 aa9.7□□□□□ -0.86
VPS54-203ENST00000409558 KRTAP1-3Q8IUG1 177 aa9.7□□□□□ -0.86
VPS54-203ENST00000409558 POM121L12Q8N7R1 296 aa9.7□□□□□ -0.86
VPS54-203ENST00000409558 CFC1BP0CG36 223 aa9.7□□□□□ -0.86
VPS54-203ENST00000409558 CFC1P0CG37 223 aa9.7□□□□□ -0.86
VPS54-203ENST00000409558 LINC00694P0DN24 101 aa9.7□□□□□ -0.86
VPS54-203ENST00000409558 A8MWV9 139 aa9.7□□□□□ -0.86
VPS54-203ENST00000409558 PAPPA-AS1Q5QFB9 102 aa9.7□□□□□ -0.86
VPS54-203ENST00000409558 LINC01006Q8NI28 216 aa9.7□□□□□ -0.86
VPS54-203ENST00000409558 CDKN2A-AS1Q9UH64 79 aa9.7□□□□□ -0.86
VPS54-203ENST00000409558 TENM1Q9UKZ4 2725 aa9.69□□□□□ -0.86
VPS54-203ENST00000409558 FSHBP01225 129 aa9.69□□□□□ -0.86
VPS54-203ENST00000409558 C10orf126Q8N4M7 172 aa9.69□□□□□ -0.86
VPS54-203ENST00000409558 NDUFA12Q9UI09 145 aa9.69□□□□□ -0.86
VPS54-203ENST00000409558 C1orf158Q8N1D5 194 aa9.69□□□□□ -0.86
VPS54-203ENST00000409558 NDUFA11Q86Y39 141 aa9.69□□□□□ -0.86
VPS54-203ENST00000409558 G3V4G9 280 aa9.68□□□□□ -0.86
VPS54-203ENST00000409558 TRBV6-5A0A0K0K1A5 114 aa9.68□□□□□ -0.86
VPS54-203ENST00000409558 CLPSL2Q6UWE3 100 aa9.68□□□□□ -0.86
VPS54-203ENST00000409558 TMEM223A0PJW6 202 aa9.68□□□□□ -0.86
VPS54-203ENST00000409558 RHOHQ15669 191 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms