RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 ATRAIDQ6UW56 229 aa13.29□□□□□ -0.28
PDLIM2-207ENST00000409417 TMEM70Q9BUB7 260 aa13.29□□□□□ -0.28
PDLIM2-207ENST00000409417 I3L3M4 83 aa13.28□□□□□ -0.28
PDLIM2-207ENST00000409417 POLR2KP53803 58 aaKnown RBP13.28□□□□□ -0.28
PDLIM2-207ENST00000409417 RBX1P62877 108 aa13.28□□□□□ -0.28
PDLIM2-207ENST00000409417 NRACQ8N912 160 aa13.28□□□□□ -0.28
PDLIM2-207ENST00000409417 Q8N976 141 aa13.28□□□□□ -0.28
PDLIM2-207ENST00000409417 BTF3L4Q96K17 158 aa13.28□□□□□ -0.28
PDLIM2-207ENST00000409417 CKS2P33552 79 aa13.27□□□□□ -0.29
PDLIM2-207ENST00000409417 UBE2WQ96B02 151 aa13.27□□□□□ -0.29
PDLIM2-207ENST00000409417 TM2D2Q9BX73 214 aa13.27□□□□□ -0.29
PDLIM2-207ENST00000409417 PKHD1P08F94 4074 aa13.26□□□□□ -0.29
PDLIM2-207ENST00000409417 TRBV27A0A0K0K1C4 114 aa13.26□□□□□ -0.29
PDLIM2-207ENST00000409417 PSCAO43653 123 aa13.26□□□□□ -0.29
PDLIM2-207ENST00000409417 ANGP03950 147 aaKnown RBP13.26□□□□□ -0.29
PDLIM2-207ENST00000409417 PMCHP20382 165 aa13.26□□□□□ -0.29
PDLIM2-207ENST00000409417 A0A1B0GUV1 79 aa13.25□□□□□ -0.29
PDLIM2-207ENST00000409417 SUMO2P61956 95 aaKnown RBP13.25□□□□□ -0.29
PDLIM2-207ENST00000409417 Q0VG73 95 aa13.25□□□□□ -0.29
PDLIM2-207ENST00000409417 TMEM242Q9NWH2 141 aa13.25□□□□□ -0.29
PDLIM2-207ENST00000409417 TRBV24-1A0A075B6N3 115 aa13.24□□□□□ -0.29
PDLIM2-207ENST00000409417 VCYO14598 125 aa13.24□□□□□ -0.29
PDLIM2-207ENST00000409417 UBE2L6O14933 153 aa13.24□□□□□ -0.29
PDLIM2-207ENST00000409417 APCSP02743 223 aa13.24□□□□□ -0.29
PDLIM2-207ENST00000409417 PPBPP02775 128 aa13.24□□□□□ -0.29
PDLIM2-207ENST00000409417 RMI2Q96E14 147 aa13.24□□□□□ -0.29
PDLIM2-207ENST00000409417 COX11Q9Y6N1 276 aa13.24□□□□□ -0.29
PDLIM2-207ENST00000409417 A0A087WTM6 91 aa13.23□□□□□ -0.29
PDLIM2-207ENST00000409417 C7orf77A4D0Y5 90 aa13.23□□□□□ -0.29
PDLIM2-207ENST00000409417 D6R8Y8 96 aa13.23□□□□□ -0.29
PDLIM2-207ENST00000409417 EREGO14944 169 aa13.23□□□□□ -0.29
PDLIM2-207ENST00000409417 TSHBP01222 138 aa13.23□□□□□ -0.29
PDLIM2-207ENST00000409417 RHEBQ15382 184 aa13.23□□□□□ -0.29
PDLIM2-207ENST00000409417 C20orf78Q9BR46 151 aa13.23□□□□□ -0.29
PDLIM2-207ENST00000409417 DNAH11Q96DT5 4516 aa13.23□□□□□ -0.29
PDLIM2-207ENST00000409417 ENHOQ6UWT2 76 aa13.23□□□□□ -0.29
PDLIM2-207ENST00000409417 CLRN3Q8NCR9 226 aa13.23□□□□□ -0.29
PDLIM2-207ENST00000409417 PRR34Q9NV39 138 aa13.23□□□□□ -0.29
PDLIM2-207ENST00000409417 TRAV9-1A0A075B6T8 112 aa13.22□□□□□ -0.29
PDLIM2-207ENST00000409417 H7C423 109 aa13.22□□□□□ -0.29
PDLIM2-207ENST00000409417 CRPP02741 224 aa13.22□□□□□ -0.29
PDLIM2-207ENST00000409417 SPATA12Q7Z6I5 190 aa13.22□□□□□ -0.29
PDLIM2-207ENST00000409417 PHOX2AO14813 284 aa13.21□□□□□ -0.3
PDLIM2-207ENST00000409417 TNFRSF6BO95407 300 aa13.21□□□□□ -0.3
PDLIM2-207ENST00000409417 RPL32P62910 135 aaKnown RBP13.21□□□□□ -0.3
PDLIM2-207ENST00000409417 LINC00269Q8N2A0 174 aa13.21□□□□□ -0.3
PDLIM2-207ENST00000409417 IGKV2D-24A0A075B6R9 120 aa13.2□□□□□ -0.3
PDLIM2-207ENST00000409417 LRCOL1A6NCL2 159 aa13.2□□□□□ -0.3
PDLIM2-207ENST00000409417 MIAQ16674 131 aa13.2□□□□□ -0.3
PDLIM2-207ENST00000409417 TMEM136Q6ZRR5 245 aa13.2□□□□□ -0.3
PDLIM2-207ENST00000409417 ORMDL3Q8N138 153 aa13.2□□□□□ -0.3
PDLIM2-207ENST00000409417 C20orf203Q8NBC4 194 aa13.2□□□□□ -0.3
PDLIM2-207ENST00000409417 KIR2DL4Q99706 377 aa13.2□□□□□ -0.3
PDLIM2-207ENST00000409417 IGLV4-60A0A075B6I1 120 aa13.19□□□□□ -0.3
PDLIM2-207ENST00000409417 APOC3P02656 99 aa13.19□□□□□ -0.3
PDLIM2-207ENST00000409417 ESDP10768 282 aa13.19□□□□□ -0.3
PDLIM2-207ENST00000409417 S100PP25815 95 aa13.19□□□□□ -0.3
PDLIM2-207ENST00000409417 KRTAP10-2P60368 255 aa13.19□□□□□ -0.3
PDLIM2-207ENST00000409417 NDUFA5Q16718 116 aa13.19□□□□□ -0.3
PDLIM2-207ENST00000409417 RPS10P5Q9NQ39 176 aa13.19□□□□□ -0.3
PDLIM2-207ENST00000409417 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.18□□□□□ -0.3
PDLIM2-207ENST00000409417 IGKV2-29A2NJV5 120 aaPredicted RBP13.18□□□□□ -0.3
PDLIM2-207ENST00000409417 FCER1GP30273 86 aa13.18□□□□□ -0.3
PDLIM2-207ENST00000409417 MAPKAPK5-AS1Q8N8E1 139 aa13.18□□□□□ -0.3
PDLIM2-207ENST00000409417 C1orf43Q9BWL3 253 aa13.18□□□□□ -0.3
PDLIM2-207ENST00000409417 NPYP01303 97 aa13.17□□□□□ -0.3
PDLIM2-207ENST00000409417 FGF6P10767 208 aa13.17□□□□□ -0.3
PDLIM2-207ENST00000409417 REG3AQ06141 175 aa13.17□□□□□ -0.3
PDLIM2-207ENST00000409417 AMMECR1LQ6DCA0 310 aa13.17□□□□□ -0.3
PDLIM2-207ENST00000409417 PRELID3AQ96N28 172 aa13.17□□□□□ -0.3
PDLIM2-207ENST00000409417 C16orf90A8MZG2 172 aa13.16□□□□□ -0.3
PDLIM2-207ENST00000409417 CLPSL2Q6UWE3 100 aa13.16□□□□□ -0.3
PDLIM2-207ENST00000409417 SVBPQ8N300 66 aa13.16□□□□□ -0.3
PDLIM2-207ENST00000409417 SMIM2Q9BVW6 85 aa13.16□□□□□ -0.3
PDLIM2-207ENST00000409417 PGPEP1Q9NXJ5 209 aa13.16□□□□□ -0.3
PDLIM2-207ENST00000409417 RNASEKQ6P5S7 137 aaKnown RBP13.16□□□□□ -0.3
PDLIM2-207ENST00000409417 LAMTOR2Q9Y2Q5 125 aa13.16□□□□□ -0.3
PDLIM2-207ENST00000409417 TCAPO15273 167 aa13.15□□□□□ -0.3
PDLIM2-207ENST00000409417 SNAPINO95295 136 aa13.15□□□□□ -0.3
PDLIM2-207ENST00000409417 ZNF25P17030 456 aaPredicted RBP13.15□□□□□ -0.3
PDLIM2-207ENST00000409417 CDPF1Q6NVV7 123 aa13.14□□□□□ -0.31
PDLIM2-207ENST00000409417 DYNC1H1Q14204 4646 aaKnown RBP13.14□□□□□ -0.31
PDLIM2-207ENST00000409417 TRAV8-4A0A0B4J246 113 aa13.13□□□□□ -0.31
PDLIM2-207ENST00000409417 Q8N814 137 aa13.13□□□□□ -0.31
PDLIM2-207ENST00000409417 BAALCQ8WXS3 180 aa13.13□□□□□ -0.31
PDLIM2-207ENST00000409417 WFDC2Q14508 124 aa13.12□□□□□ -0.31
PDLIM2-207ENST00000409417 MRPL52Q86TS9 123 aaKnown RBP13.12□□□□□ -0.31
PDLIM2-207ENST00000409417 TMEM101Q96IK0 257 aa13.12□□□□□ -0.31
PDLIM2-207ENST00000409417 PRSS47A8MTI9 375 aa13.11□□□□□ -0.31
PDLIM2-207ENST00000409417 HLA-DQA1P01909 254 aa13.11□□□□□ -0.31
PDLIM2-207ENST00000409417 OR5A1Q8NGJ0 315 aa13.11□□□□□ -0.31
PDLIM2-207ENST00000409417 GNB1LQ9BYB4 327 aa13.11□□□□□ -0.31
PDLIM2-207ENST00000409417 LECT2O14960 151 aa13.1□□□□□ -0.31
PDLIM2-207ENST00000409417 NTN5Q8WTR8 489 aaPredicted RBP13.1□□□□□ -0.31
PDLIM2-207ENST00000409417 IGLV10-54A0A075B6I4 117 aa13.1□□□□□ -0.31
PDLIM2-207ENST00000409417 SMAGPQ0VAQ4 97 aa13.1□□□□□ -0.31
PDLIM2-207ENST00000409417 COX19Q49B96 90 aa13.1□□□□□ -0.31
PDLIM2-207ENST00000409417 KRTAP26-1Q6PEX3 210 aa13.1□□□□□ -0.31
PDLIM2-207ENST00000409417 TMEM18Q96B42 140 aa13.1□□□□□ -0.31
PDLIM2-207ENST00000409417 KIAA1109Q2LD37 5005 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms