RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 C3orf84H3BNL1 204 aa12.48□□□□□ -0.41
SDC1-203ENST00000403076 LAGE3Q14657 143 aa12.48□□□□□ -0.41
SDC1-203ENST00000403076 ESRGQ1W209 222 aa12.48□□□□□ -0.41
SDC1-203ENST00000403076 NTM-AS1Q6ZSK4 140 aa12.48□□□□□ -0.41
SDC1-203ENST00000403076 TRBV25-1A0A075B6N4 114 aa12.47□□□□□ -0.41
SDC1-203ENST00000403076 TRBV6-8A0A0A6YYG3 113 aa12.47□□□□□ -0.41
SDC1-203ENST00000403076 IGHV1-24A0A0C4DH33 117 aa12.47□□□□□ -0.41
SDC1-203ENST00000403076 CCL18P55774 89 aa12.47□□□□□ -0.41
SDC1-203ENST00000403076 NDUFA6P56556 154 aa12.47□□□□□ -0.41
SDC1-203ENST00000403076 AP5S1Q9NUS5 200 aa12.47□□□□□ -0.41
SDC1-203ENST00000403076 K7EMI3 77 aa12.47□□□□□ -0.41
SDC1-203ENST00000403076 ORMDL2Q53FV1 153 aa12.47□□□□□ -0.41
SDC1-203ENST00000403076 TIRAPP58753 221 aa12.46□□□□□ -0.42
SDC1-203ENST00000403076 LELP1Q5T871 98 aa12.46□□□□□ -0.42
SDC1-203ENST00000403076 URB1-AS1Q96HZ7 61 aa12.46□□□□□ -0.42
SDC1-203ENST00000403076 CHCHD5Q9BSY4 110 aa12.46□□□□□ -0.42
SDC1-203ENST00000403076 TMEM243Q9BU79 118 aa12.46□□□□□ -0.42
SDC1-203ENST00000403076 SERF1AO75920 110 aa12.45□□□□□ -0.42
SDC1-203ENST00000403076 CASC10Q5T4H9 136 aa12.45□□□□□ -0.42
SDC1-203ENST00000403076 CHCHD1Q96BP2 118 aaKnown RBP12.45□□□□□ -0.42
SDC1-203ENST00000403076 TRAV8-6A0A0B4J262 113 aa12.44□□□□□ -0.42
SDC1-203ENST00000403076 LINC01546A6NGU7 62 aa12.44□□□□□ -0.42
SDC1-203ENST00000403076 UBE2L6O14933 153 aa12.44□□□□□ -0.42
SDC1-203ENST00000403076 HSBP1O75506 76 aa12.44□□□□□ -0.42
SDC1-203ENST00000403076 COA6Q5JTJ3 125 aaKnown RBP12.44□□□□□ -0.42
SDC1-203ENST00000403076 UBE2DNLQ8IWF7 75 aa12.44□□□□□ -0.42
SDC1-203ENST00000403076 S100A6P06703 90 aa12.43□□□□□ -0.42
SDC1-203ENST00000403076 TMEM18Q96B42 140 aa12.43□□□□□ -0.42
SDC1-203ENST00000403076 CHCHD7Q9BUK0 85 aa12.43□□□□□ -0.42
SDC1-203ENST00000403076 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.42□□□□□ -0.42
SDC1-203ENST00000403076 IGKV2-29A2NJV5 120 aaPredicted RBP12.42□□□□□ -0.42
SDC1-203ENST00000403076 BTF3P20290 206 aaKnown RBP12.42□□□□□ -0.42
SDC1-203ENST00000403076 TMA7Q9Y2S6 64 aaKnown RBP12.42□□□□□ -0.42
SDC1-203ENST00000403076 LINC00588Q9Y4M8 146 aa12.42□□□□□ -0.42
SDC1-203ENST00000403076 TMEM262E9PQX1 116 aa12.42□□□□□ -0.42
SDC1-203ENST00000403076 ESDP10768 282 aa12.42□□□□□ -0.42
SDC1-203ENST00000403076 G0S2P27469 103 aa12.42□□□□□ -0.42
SDC1-203ENST00000403076 GAGE6Q13070 117 aa12.42□□□□□ -0.42
SDC1-203ENST00000403076 C20orf203Q8NBC4 194 aa12.42□□□□□ -0.42
SDC1-203ENST00000403076 PMCHL1Q16048 86 aa12.41□□□□□ -0.42
SDC1-203ENST00000403076 MRPS16Q9Y3D3 137 aaKnown RBP12.41□□□□□ -0.42
SDC1-203ENST00000403076 NUPR1O60356 82 aa12.4□□□□□ -0.42
SDC1-203ENST00000403076 LINC00310P59036 64 aa12.4□□□□□ -0.42
SDC1-203ENST00000403076 C2orf66Q6UXQ4 117 aa12.4□□□□□ -0.42
SDC1-203ENST00000403076 FAM19A2Q8N3H0 131 aa12.4□□□□□ -0.42
SDC1-203ENST00000403076 CYSLTR1Q9Y271 337 aa12.4□□□□□ -0.42
SDC1-203ENST00000403076 RPL39P62891 51 aaKnown RBP12.39□□□□□ -0.43
SDC1-203ENST00000403076 AMMECR1LQ6DCA0 310 aa12.39□□□□□ -0.43
SDC1-203ENST00000403076 H7C423 109 aa12.38□□□□□ -0.43
SDC1-203ENST00000403076 HBDP02042 147 aa12.38□□□□□ -0.43
SDC1-203ENST00000403076 SMAGPQ0VAQ4 97 aa12.38□□□□□ -0.43
SDC1-203ENST00000403076 WFDC10BQ8IUB3 73 aa12.38□□□□□ -0.43
SDC1-203ENST00000403076 A0A087WX48 190 aa12.37□□□□□ -0.43
SDC1-203ENST00000403076 PKIAP61925 76 aa12.37□□□□□ -0.43
SDC1-203ENST00000403076 DGAT2L7PQ6IED9 249 aa12.37□□□□□ -0.43
SDC1-203ENST00000403076 DNAH7Q8WXX0 4024 aa12.37□□□□□ -0.43
SDC1-203ENST00000403076 FGF6P10767 208 aa12.37□□□□□ -0.43
SDC1-203ENST00000403076 TOMM6Q96B49 74 aa12.37□□□□□ -0.43
SDC1-203ENST00000403076 SIVA1O15304 175 aa12.36□□□□□ -0.43
SDC1-203ENST00000403076 PDZD11Q5EBL8 140 aa12.36□□□□□ -0.43
SDC1-203ENST00000403076 TMEM101Q96IK0 257 aa12.36□□□□□ -0.43
SDC1-203ENST00000403076 LINC01549A6NIU2 74 aa12.35□□□□□ -0.43
SDC1-203ENST00000403076 SCGB3A1Q96QR1 104 aa12.35□□□□□ -0.43
SDC1-203ENST00000403076 UPK3BQ9BT76 320 aa12.35□□□□□ -0.43
SDC1-203ENST00000403076 A0A096LNJ9 63 aa12.34□□□□□ -0.43
SDC1-203ENST00000403076 IGHV3-30P01768 117 aa12.34□□□□□ -0.43
SDC1-203ENST00000403076 IGHV3-33P01772 117 aa12.34□□□□□ -0.43
SDC1-203ENST00000403076 IGHV3-30-3P0DP02 117 aa12.34□□□□□ -0.43
SDC1-203ENST00000403076 IGHV3-30-5P0DP03 117 aa12.34□□□□□ -0.43
SDC1-203ENST00000403076 SNRPEP62304 92 aaKnown RBP12.34□□□□□ -0.43
SDC1-203ENST00000403076 UBE2D4Q9Y2X8 147 aa12.34□□□□□ -0.43
SDC1-203ENST00000403076 RBX1P62877 108 aa12.33□□□□□ -0.44
SDC1-203ENST00000403076 MPV17L2Q567V2 206 aa12.33□□□□□ -0.44
SDC1-203ENST00000403076 Q8N976 141 aa12.33□□□□□ -0.44
SDC1-203ENST00000403076 OR5A1Q8NGJ0 315 aa12.33□□□□□ -0.44
SDC1-203ENST00000403076 Q9H8V8 135 aa12.33□□□□□ -0.44
SDC1-203ENST00000403076 SPANXA1Q9NS26 97 aa12.33□□□□□ -0.44
SDC1-203ENST00000403076 C5orf52A6NGY3 159 aa12.32□□□□□ -0.44
SDC1-203ENST00000403076 FABP4P15090 132 aa12.32□□□□□ -0.44
SDC1-203ENST00000403076 ZNF25P17030 456 aaPredicted RBP12.32□□□□□ -0.44
SDC1-203ENST00000403076 LGALS9CQ6DKI2 356 aa12.32□□□□□ -0.44
SDC1-203ENST00000403076 MRPL52Q86TS9 123 aaKnown RBP12.32□□□□□ -0.44
SDC1-203ENST00000403076 Q8N3U1 123 aa12.32□□□□□ -0.44
SDC1-203ENST00000403076 TIMM21Q9BVV7 248 aa12.32□□□□□ -0.44
SDC1-203ENST00000403076 DYNC2H1Q8NCM8 4307 aaKnown RBP12.32□□□□□ -0.44
SDC1-203ENST00000403076 TENM2Q9NT68 2774 aa12.32□□□□□ -0.44
SDC1-203ENST00000403076 LEPROTL1O95214 131 aa12.32□□□□□ -0.44
SDC1-203ENST00000403076 S100A2P29034 98 aa12.32□□□□□ -0.44
SDC1-203ENST00000403076 ERASQ7Z444 233 aa12.32□□□□□ -0.44
SDC1-203ENST00000403076 CSMD3Q7Z407 3707 aa12.31□□□□□ -0.44
SDC1-203ENST00000403076 A0A1B0GUV1 79 aa12.31□□□□□ -0.44
SDC1-203ENST00000403076 PYGO1Q9Y3Y4 419 aa12.31□□□□□ -0.44
SDC1-203ENST00000403076 STARD9Q9P2P6 4700 aa12.3□□□□□ -0.44
SDC1-203ENST00000403076 IGLV4-60A0A075B6I1 120 aa12.3□□□□□ -0.44
SDC1-203ENST00000403076 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.3□□□□□ -0.44
SDC1-203ENST00000403076 ATP5LO75964 103 aa12.3□□□□□ -0.44
SDC1-203ENST00000403076 LY6G6CO95867 125 aa12.3□□□□□ -0.44
SDC1-203ENST00000403076 ANGP03950 147 aaKnown RBP12.3□□□□□ -0.44
SDC1-203ENST00000403076 DNAH10OSP0CZ25 163 aa12.3□□□□□ -0.44
SDC1-203ENST00000403076 LINC01556Q5JQF7 62 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms