RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 TRBV27A0A0K0K1C4 114 aa13.79□□□□□ -0.2
USP48-204ENST00000400301 POLR2KP53803 58 aaKnown RBP13.79□□□□□ -0.2
USP48-204ENST00000400301 G3V4G9 280 aa13.78□□□□□ -0.2
USP48-204ENST00000400301 HIST2H2BDQ6DRA6 164 aa13.78□□□□□ -0.2
USP48-204ENST00000400301 IGHV3-30-3P0DP02 117 aa13.78□□□□□ -0.2
USP48-204ENST00000400301 PRSS47A8MTI9 375 aa13.77□□□□□ -0.2
USP48-204ENST00000400301 NTN5Q8WTR8 489 aaPredicted RBP13.77□□□□□ -0.2
USP48-204ENST00000400301 FN1P02751 2386 aaKnown RBP13.77□□□□□ -0.2
USP48-204ENST00000400301 PFN2P35080 140 aa13.77□□□□□ -0.21
USP48-204ENST00000400301 UBE2WQ96B02 151 aa13.77□□□□□ -0.21
USP48-204ENST00000400301 NDUFA11Q86Y39 141 aa13.77□□□□□ -0.21
USP48-204ENST00000400301 ZNF702PQ9H963 129 aa13.76□□□□□ -0.21
USP48-204ENST00000400301 TRBV7-3A0A075B6L6 115 aa13.76□□□□□ -0.21
USP48-204ENST00000400301 PROK1P58294 105 aa13.76□□□□□ -0.21
USP48-204ENST00000400301 TRBV6-5A0A0K0K1A5 114 aa13.76□□□□□ -0.21
USP48-204ENST00000400301 CITED2Q99967 270 aaPredicted RBP13.76□□□□□ -0.21
USP48-204ENST00000400301 A0A0J9YY99 117 aa13.76□□□□□ -0.21
USP48-204ENST00000400301 SOCS3O14543 225 aa13.76□□□□□ -0.21
USP48-204ENST00000400301 SS18Q15532 418 aa13.76□□□□□ -0.21
USP48-204ENST00000400301 DAND5Q8N907 189 aa13.76□□□□□ -0.21
USP48-204ENST00000400301 COL27A1Q8IZC6 1860 aaPredicted RBP13.75□□□□□ -0.21
USP48-204ENST00000400301 IGLV2-18A0A075B6J9 118 aa13.75□□□□□ -0.21
USP48-204ENST00000400301 K7EQD1 137 aa13.75□□□□□ -0.21
USP48-204ENST00000400301 CRYGDP07320 174 aa13.75□□□□□ -0.21
USP48-204ENST00000400301 DEFB114Q30KQ6 69 aa13.75□□□□□ -0.21
USP48-204ENST00000400301 IGLV4-3A0A075B6K6 122 aa13.75□□□□□ -0.21
USP48-204ENST00000400301 TRAV25A0A0B4J276 109 aa13.75□□□□□ -0.21
USP48-204ENST00000400301 C18orf65Q6ZTR6 163 aa13.75□□□□□ -0.21
USP48-204ENST00000400301 Q6ZUT4 128 aa13.75□□□□□ -0.21
USP48-204ENST00000400301 EPG5Q9HCE0 2579 aa13.74□□□□□ -0.21
USP48-204ENST00000400301 J3QKU1 62 aa13.74□□□□□ -0.21
USP48-204ENST00000400301 RPL32P62910 135 aaKnown RBP13.74□□□□□ -0.21
USP48-204ENST00000400301 ZMAT4Q9H898 229 aa13.74□□□□□ -0.21
USP48-204ENST00000400301 PRM2P04554 102 aa13.74□□□□□ -0.21
USP48-204ENST00000400301 ZNF22P17026 224 aaPredicted RBP13.74□□□□□ -0.21
USP48-204ENST00000400301 C9orf85Q96MD7 179 aa13.74□□□□□ -0.21
USP48-204ENST00000400301 ANKRD17O75179 2603 aaKnown RBP13.74□□□□□ -0.21
USP48-204ENST00000400301 NBEAQ8NFP9 2946 aa13.74□□□□□ -0.21
USP48-204ENST00000400301 IGHV1-58A0A0C4DH39 117 aa13.73□□□□□ -0.21
USP48-204ENST00000400301 DNAJC9-AS1A6NH13 148 aa13.73□□□□□ -0.21
USP48-204ENST00000400301 JMJD1CQ15652 2540 aa13.73□□□□□ -0.21
USP48-204ENST00000400301 SLC25A29Q8N8R3 303 aa13.73□□□□□ -0.21
USP48-204ENST00000400301 PTH2Q96A98 100 aa13.73□□□□□ -0.21
USP48-204ENST00000400301 A0A096LPF7 62 aa13.73□□□□□ -0.21
USP48-204ENST00000400301 TEN1Q86WV5 123 aa13.72□□□□□ -0.21
USP48-204ENST00000400301 CARD19Q96LW7 228 aa13.72□□□□□ -0.21
USP48-204ENST00000400301 DAZ2Q13117 558 aaKnown RBP13.72□□□□□ -0.21
USP48-204ENST00000400301 DAZ4Q86SG3 579 aaKnown RBP13.72□□□□□ -0.21
USP48-204ENST00000400301 DAZ3Q9NR90 486 aaKnown RBP13.72□□□□□ -0.21
USP48-204ENST00000400301 WFDC11Q8NEX6 87 aa13.71□□□□□ -0.21
USP48-204ENST00000400301 VSIG2Q96IQ7 327 aa13.71□□□□□ -0.21
USP48-204ENST00000400301 IFITM1P13164 125 aa13.71□□□□□ -0.22
USP48-204ENST00000400301 BRI3O95415 125 aa13.71□□□□□ -0.22
USP48-204ENST00000400301 TSHBP01222 138 aa13.7□□□□□ -0.22
USP48-204ENST00000400301 SCGB1A1P11684 91 aa13.7□□□□□ -0.22
USP48-204ENST00000400301 C16orf74Q96GX8 76 aa13.7□□□□□ -0.22
USP48-204ENST00000400301 COL6A3P12111 3177 aa13.7□□□□□ -0.22
USP48-204ENST00000400301 A0A0J9YXY3 114 aa13.7□□□□□ -0.22
USP48-204ENST00000400301 Q6ZSV7 163 aa13.7□□□□□ -0.22
USP48-204ENST00000400301 FOXI1Q12951 378 aa13.69□□□□□ -0.22
USP48-204ENST00000400301 Q6ZTI0 123 aa13.69□□□□□ -0.22
USP48-204ENST00000400301 ANKRD29Q8N6D5 301 aa13.69□□□□□ -0.22
USP48-204ENST00000400301 LINC00467Q9BRT7 94 aa13.69□□□□□ -0.22
USP48-204ENST00000400301 TMEM223A0PJW6 202 aa13.69□□□□□ -0.22
USP48-204ENST00000400301 IGIPA6NJ69 53 aa13.68□□□□□ -0.22
USP48-204ENST00000400301 LINC01620Q4KN68 170 aa13.68□□□□□ -0.22
USP48-204ENST00000400301 CLPSL2Q6UWE3 100 aa13.68□□□□□ -0.22
USP48-204ENST00000400301 LRRC75A-AS1Q8N1F1 130 aa13.68□□□□□ -0.22
USP48-204ENST00000400301 AGRNO00468 2067 aa13.68□□□□□ -0.22
USP48-204ENST00000400301 C5orf38Q86SI9 138 aa13.68□□□□□ -0.22
USP48-204ENST00000400301 TCL1BO95988 128 aa13.68□□□□□ -0.22
USP48-204ENST00000400301 ACANP16112 2415 aa13.68□□□□□ -0.22
USP48-204ENST00000400301 DAD1P61803 113 aa13.68□□□□□ -0.22
USP48-204ENST00000400301 S100A7L2Q5SY68 101 aa13.68□□□□□ -0.22
USP48-204ENST00000400301 CFAP126Q5VTH2 177 aa13.68□□□□□ -0.22
USP48-204ENST00000400301 TMEM263Q8WUH6 116 aaKnown RBP13.67□□□□□ -0.22
USP48-204ENST00000400301 ICOSQ9Y6W8 199 aa13.67□□□□□ -0.22
USP48-204ENST00000400301 F5H768 121 aa13.67□□□□□ -0.22
USP48-204ENST00000400301 NXPH4O95158 308 aa13.66□□□□□ -0.22
USP48-204ENST00000400301 CDKN2A-AS1Q9UH64 79 aa13.66□□□□□ -0.22
USP48-204ENST00000400301 SPANXB1Q9NS25 103 aaPredicted RBP13.66□□□□□ -0.22
USP48-204ENST00000400301 AKAP13Q12802 2813 aa13.66□□□□□ -0.22
USP48-204ENST00000400301 TRBV10-1A0A0K0K1A3 114 aa13.65□□□□□ -0.22
USP48-204ENST00000400301 XCL1P47992 114 aa13.65□□□□□ -0.22
USP48-204ENST00000400301 NFE4Q86UQ8 179 aa13.65□□□□□ -0.22
USP48-204ENST00000400301 ZNF843Q8N446 348 aa13.65□□□□□ -0.22
USP48-204ENST00000400301 KRTAP10-9P60411 292 aa13.65□□□□□ -0.22
USP48-204ENST00000400301 TINCRA0A1B0GVN0 87 aa13.65□□□□□ -0.22
USP48-204ENST00000400301 UFSP1Q6NVU6 142 aa13.65□□□□□ -0.22
USP48-204ENST00000400301 MYO15AQ9UKN7 3530 aa13.64□□□□□ -0.23
USP48-204ENST00000400301 HERV-K104P63124 156 aa13.64□□□□□ -0.23
USP48-204ENST00000400301 FRYQ5TBA9 3013 aa13.64□□□□□ -0.23
USP48-204ENST00000400301 OVOL2Q9BRP0 275 aa13.63□□□□□ -0.23
USP48-204ENST00000400301 TRAV13-2A0A0B4J235 113 aa13.63□□□□□ -0.23
USP48-204ENST00000400301 GAGE2AQ6NT46 116 aa13.63□□□□□ -0.23
USP48-204ENST00000400301 GYPEP15421 78 aa13.62□□□□□ -0.23
USP48-204ENST00000400301 TRAV4A0A0B4J268 109 aa13.62□□□□□ -0.23
USP48-204ENST00000400301 HIST2H2BCQ6DN03 193 aa13.62□□□□□ -0.23
USP48-204ENST00000400301 PYGO1Q9Y3Y4 419 aa13.62□□□□□ -0.23
USP48-204ENST00000400301 IGHV3-30P01768 117 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms