RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 MALP21145 153 aa7.01□□□□□ -1.29
COL28A1-201ENST00000399429 TMEM258P61165 79 aa7.01□□□□□ -1.29
COL28A1-201ENST00000399429 TIRAPP58753 221 aa7.01□□□□□ -1.29
COL28A1-201ENST00000399429 TMEM61Q8N0U2 210 aa7.01□□□□□ -1.29
COL28A1-201ENST00000399429 IGIPA6NJ69 53 aa7.01□□□□□ -1.29
COL28A1-201ENST00000399429 IGLV4-3A0A075B6K6 122 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 TRGV2A0A075B6R0 118 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 TRGV1A0A0A0MS02 117 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 FAM223BA6NKX1 122 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 C10orf142B7Z368 130 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 RPL18AQ02543 176 aaKnown RBP7□□□□□ -1.29
COL28A1-201ENST00000399429 FAM223AQ8IWN6 122 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 SERP2Q8N6R1 65 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 A0A087WVE0 104 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 USP17L23D6RBM5 183 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 COX6B1P14854 86 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 WFDC11Q8NEX6 87 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 NDUFA4O00483 81 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 IGHG2P01859 326 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 SND1-IT1Q9HBX3 110 aa7□□□□□ -1.29
COL28A1-201ENST00000399429 UNQ9165/PRO28630Q6UXU0 137 aa6.99□□□□□ -1.29
COL28A1-201ENST00000399429 ZFAND2AQ8N6M9 145 aa6.99□□□□□ -1.29
COL28A1-201ENST00000399429 CDKN2A-AS1Q9UH64 79 aa6.99□□□□□ -1.29
COL28A1-201ENST00000399429 CRYGDP07320 174 aa6.99□□□□□ -1.29
COL28A1-201ENST00000399429 C20orf173Q96LM9 149 aa6.99□□□□□ -1.29
COL28A1-201ENST00000399429 A0A1W2PNU3 283 aaPredicted RBP6.99□□□□□ -1.29
COL28A1-201ENST00000399429 PSMB8P28062 276 aa6.99□□□□□ -1.29
COL28A1-201ENST00000399429 Q8N9W7 124 aa6.99□□□□□ -1.29
COL28A1-201ENST00000399429 CCDC168Q8NDH2 2452 aa6.99□□□□□ -1.29
COL28A1-201ENST00000399429 LAMA1P25391 3075 aa6.98□□□□□ -1.29
COL28A1-201ENST00000399429 H3BUX3 64 aa6.98□□□□□ -1.29
COL28A1-201ENST00000399429 POLR2KP53803 58 aaKnown RBP6.98□□□□□ -1.29
COL28A1-201ENST00000399429 SBSPONQ8IVN8 264 aa6.98□□□□□ -1.29
COL28A1-201ENST00000399429 ORMDL1Q9P0S3 153 aa6.98□□□□□ -1.29
COL28A1-201ENST00000399429 VSIG2Q96IQ7 327 aa6.98□□□□□ -1.29
COL28A1-201ENST00000399429 PRUNE2Q8WUY3 3088 aa6.98□□□□□ -1.29
COL28A1-201ENST00000399429 DEFB131AP59861 70 aa6.98□□□□□ -1.29
COL28A1-201ENST00000399429 ADAMTSL4-AS1Q5T5F5 129 aa6.98□□□□□ -1.29
COL28A1-201ENST00000399429 USMG5Q96IX5 58 aa6.98□□□□□ -1.29
COL28A1-201ENST00000399429 UBE2E2Q96LR5 201 aa6.98□□□□□ -1.29
COL28A1-201ENST00000399429 CCDC140Q96MF4 163 aa6.98□□□□□ -1.29
COL28A1-201ENST00000399429 ABCA2Q9BZC7 2435 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 IGHV4-4A0A075B6R2 117 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 MED14OSP0DP75 135 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 RNASE3P12724 160 aaKnown RBP6.97□□□□□ -1.29
COL28A1-201ENST00000399429 PIK3CD-AS1Q5SR53 167 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 LINC00308Q8TCZ7 52 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 FRYQ5TBA9 3013 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 FAM236DA0A1B0GTK5 79 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 TRBV12-3P01733 135 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 FAM236CP0DP71 79 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 TRBV27A0A0K0K1C4 114 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 SLPIP03973 132 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 POM121L12Q8N7R1 296 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 ZFAND3Q9H8U3 227 aa6.97□□□□□ -1.29
COL28A1-201ENST00000399429 TLN1Q9Y490 2541 aaKnown RBP6.97□□□□□ -1.29
COL28A1-201ENST00000399429 TRAV25A0A0B4J276 109 aa6.96□□□□□ -1.29
COL28A1-201ENST00000399429 TRBV7-7A0A0K0K1E9 115 aa6.96□□□□□ -1.29
COL28A1-201ENST00000399429 NCR3O14931 201 aa6.96□□□□□ -1.29
COL28A1-201ENST00000399429 CEP192Q8TEP8 1941 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 TSHBP01222 138 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 HIST2H2BCQ6DN03 193 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 HIST2H2BDQ6DRA6 164 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 WFDC9Q8NEX5 89 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 USP34Q70CQ2 3546 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 C4orf26Q17RF5 130 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 MRGPRG-AS1Q2M3A8 158 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 COX8CQ7Z4L0 72 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 GPHB5Q86YW7 130 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 MIR7-3HGQ8N6C7 128 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 KIR2DL5BQ8NHK3 375 aa6.96□□□□□ -1.3
COL28A1-201ENST00000399429 CHD9Q3L8U1 2897 aa6.95□□□□□ -1.3
COL28A1-201ENST00000399429 CLPSL1A2RUU4 121 aa6.95□□□□□ -1.3
COL28A1-201ENST00000399429 LINC01546A6NGU7 62 aa6.95□□□□□ -1.3
COL28A1-201ENST00000399429 H0YGX0 51 aa6.95□□□□□ -1.3
COL28A1-201ENST00000399429 M0QY20 66 aa6.95□□□□□ -1.3
COL28A1-201ENST00000399429 ENHOQ6UWT2 76 aa6.95□□□□□ -1.3
COL28A1-201ENST00000399429 IGHV4OR15-8A0A075B7B6 117 aa6.95□□□□□ -1.3
COL28A1-201ENST00000399429 A0A087WW49 117 aa6.95□□□□□ -1.3
COL28A1-201ENST00000399429 MPLKIPQ8TAP9 179 aa6.95□□□□□ -1.3
COL28A1-201ENST00000399429 PSMG3-AS1Q96PY0 264 aa6.95□□□□□ -1.3
COL28A1-201ENST00000399429 TRGV4A0A0C4DH28 118 aa6.94□□□□□ -1.3
COL28A1-201ENST00000399429 CXCL5P42830 114 aa6.94□□□□□ -1.3
COL28A1-201ENST00000399429 XCL2Q9UBD3 114 aa6.94□□□□□ -1.3
COL28A1-201ENST00000399429 SETD2Q9BYW2 2564 aaPredicted RBP6.94□□□□□ -1.3
COL28A1-201ENST00000399429 SZT2Q5T011 3432 aa6.93□□□□□ -1.3
COL28A1-201ENST00000399429 PROK1P58294 105 aa6.93□□□□□ -1.3
COL28A1-201ENST00000399429 CFHR3Q02985 330 aa6.93□□□□□ -1.3
COL28A1-201ENST00000399429 BPESC1Q9GZL8 116 aa6.93□□□□□ -1.3
COL28A1-201ENST00000399429 C5orf38Q86SI9 138 aa6.93□□□□□ -1.3
COL28A1-201ENST00000399429 F8W735 103 aaPredicted RBP6.93□□□□□ -1.3
COL28A1-201ENST00000399429 STHQ8IWL8 128 aa6.92□□□□□ -1.3
COL28A1-201ENST00000399429 UPK3BQ9BT76 320 aa6.92□□□□□ -1.3
COL28A1-201ENST00000399429 SNURFQ9Y675 71 aa6.92□□□□□ -1.3
COL28A1-201ENST00000399429 DAD1P61803 113 aa6.92□□□□□ -1.3
COL28A1-201ENST00000399429 CCL19Q99731 98 aa6.92□□□□□ -1.3
COL28A1-201ENST00000399429 NDUFC2O95298 119 aa6.92□□□□□ -1.3
COL28A1-201ENST00000399429 NBL1P41271 181 aa6.92□□□□□ -1.3
COL28A1-201ENST00000399429 V9GYY9 64 aa6.92□□□□□ -1.3
COL28A1-201ENST00000399429 BRI3O95415 125 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms