RNA–Protein interactions for RNA: ENST00000396345.1

HOXA9-202, Transcript of homeobox A9, humanhuman

TSL 2 BASIC

Gene HOXA9, Length 797 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-202ENST00000396345 TMEM243Q9BU79 118 aa12.98□□□□□ -0.33
HOXA9-202ENST00000396345 CHCHD7Q9BUK0 85 aa12.98□□□□□ -0.33
HOXA9-202ENST00000396345 AMTP48728 403 aa12.97□□□□□ -0.33
HOXA9-202ENST00000396345 SUMO2P61956 95 aaKnown RBP12.97□□□□□ -0.33
HOXA9-202ENST00000396345 GAGE6Q13070 117 aa12.97□□□□□ -0.33
HOXA9-202ENST00000396345 TMEM136Q6ZRR5 245 aa12.97□□□□□ -0.33
HOXA9-202ENST00000396345 ORMDL3Q8N138 153 aa12.97□□□□□ -0.33
HOXA9-202ENST00000396345 TRBV24-1A0A075B6N3 115 aa12.96□□□□□ -0.33
HOXA9-202ENST00000396345 IBA57-AS1B1ANH7 110 aa12.96□□□□□ -0.33
HOXA9-202ENST00000396345 VCYO14598 125 aa12.96□□□□□ -0.33
HOXA9-202ENST00000396345 TNFRSF6BO95407 300 aa12.96□□□□□ -0.33
HOXA9-202ENST00000396345 C20orf78Q9BR46 151 aa12.96□□□□□ -0.33
HOXA9-202ENST00000396345 DNAH17Q9UFH2 4485 aa12.96□□□□□ -0.34
HOXA9-202ENST00000396345 TRBV27A0A0K0K1C4 114 aa12.95□□□□□ -0.34
HOXA9-202ENST00000396345 APCSP02743 223 aa12.95□□□□□ -0.34
HOXA9-202ENST00000396345 ATRAIDQ6UW56 229 aa12.95□□□□□ -0.34
HOXA9-202ENST00000396345 PRELID3AQ96N28 172 aa12.95□□□□□ -0.34
HOXA9-202ENST00000396345 PHOX2AO14813 284 aa12.94□□□□□ -0.34
HOXA9-202ENST00000396345 UBE2L6O14933 153 aa12.94□□□□□ -0.34
HOXA9-202ENST00000396345 TSHBP01222 138 aa12.94□□□□□ -0.34
HOXA9-202ENST00000396345 NPYP01303 97 aa12.94□□□□□ -0.34
HOXA9-202ENST00000396345 ELOBQ15370 118 aa12.94□□□□□ -0.34
HOXA9-202ENST00000396345 MPV17L2Q567V2 206 aa12.94□□□□□ -0.34
HOXA9-202ENST00000396345 LINC00336Q6ZUF6 198 aa12.94□□□□□ -0.34
HOXA9-202ENST00000396345 NFE4Q86UQ8 179 aa12.94□□□□□ -0.34
HOXA9-202ENST00000396345 HLA-DQA1P01909 254 aa12.93□□□□□ -0.34
HOXA9-202ENST00000396345 RPL32P62910 135 aaKnown RBP12.93□□□□□ -0.34
HOXA9-202ENST00000396345 LAGE3Q14657 143 aa12.93□□□□□ -0.34
HOXA9-202ENST00000396345 COX19Q49B96 90 aa12.93□□□□□ -0.34
HOXA9-202ENST00000396345 GNB1LQ9BYB4 327 aa12.93□□□□□ -0.34
HOXA9-202ENST00000396345 KLK12Q9UKR0 248 aa12.93□□□□□ -0.34
HOXA9-202ENST00000396345 TGIF2-C20orf24A0A0A6YYL0 155 aa12.92□□□□□ -0.34
HOXA9-202ENST00000396345 KIR2DL4Q99706 377 aa12.92□□□□□ -0.34
HOXA9-202ENST00000396345 PRSS29PA6NIE9 313 aa12.91□□□□□ -0.34
HOXA9-202ENST00000396345 FCER1GP30273 86 aa12.91□□□□□ -0.34
HOXA9-202ENST00000396345 RBX1P62877 108 aa12.91□□□□□ -0.34
HOXA9-202ENST00000396345 Q8N976 141 aa12.91□□□□□ -0.34
HOXA9-202ENST00000396345 Q9HAA7 133 aa12.91□□□□□ -0.34
HOXA9-202ENST00000396345 LAMTOR2Q9Y2Q5 125 aa12.91□□□□□ -0.34
HOXA9-202ENST00000396345 ANGP03950 147 aaKnown RBP12.9□□□□□ -0.34
HOXA9-202ENST00000396345 Q6ZRN7 208 aaPredicted RBP12.9□□□□□ -0.34
HOXA9-202ENST00000396345 SMIM2Q9BVW6 85 aa12.9□□□□□ -0.34
HOXA9-202ENST00000396345 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.89□□□□□ -0.35
HOXA9-202ENST00000396345 TRAV8-3A0A0A6YYJ7 113 aa12.89□□□□□ -0.35
HOXA9-202ENST00000396345 IGKV2-29A2NJV5 120 aaPredicted RBP12.89□□□□□ -0.35
HOXA9-202ENST00000396345 ESDP10768 282 aa12.89□□□□□ -0.35
HOXA9-202ENST00000396345 KIAA1644Q3SXP7 199 aa12.89□□□□□ -0.35
HOXA9-202ENST00000396345 A0A1B0GUV1 79 aa12.88□□□□□ -0.35
HOXA9-202ENST00000396345 H7C423 109 aa12.88□□□□□ -0.35
HOXA9-202ENST00000396345 MT-ND6P03923 174 aa12.88□□□□□ -0.35
HOXA9-202ENST00000396345 UBE2WQ96B02 151 aa12.88□□□□□ -0.35
HOXA9-202ENST00000396345 MAP1LC3AQ9H492 121 aa12.88□□□□□ -0.35
HOXA9-202ENST00000396345 FAT2Q9NYQ8 4349 aa12.88□□□□□ -0.35
HOXA9-202ENST00000396345 TCAPO15273 167 aa12.87□□□□□ -0.35
HOXA9-202ENST00000396345 TNP2Q05952 138 aa12.87□□□□□ -0.35
HOXA9-202ENST00000396345 AMMECR1LQ6DCA0 310 aa12.87□□□□□ -0.35
HOXA9-202ENST00000396345 MRPL18Q9H0U6 180 aaKnown RBP12.87□□□□□ -0.35
HOXA9-202ENST00000396345 SMCO4Q9NRQ5 59 aa12.87□□□□□ -0.35
HOXA9-202ENST00000396345 LOC389332A0A1B0GUA5 103 aa12.86□□□□□ -0.35
HOXA9-202ENST00000396345 PRSS47A8MTI9 375 aa12.86□□□□□ -0.35
HOXA9-202ENST00000396345 CRPP02741 224 aa12.86□□□□□ -0.35
HOXA9-202ENST00000396345 Q0VG73 95 aa12.86□□□□□ -0.35
HOXA9-202ENST00000396345 FABP9Q0Z7S8 132 aa12.86□□□□□ -0.35
HOXA9-202ENST00000396345 YPEL4Q96NS1 127 aa12.86□□□□□ -0.35
HOXA9-202ENST00000396345 IGLV4-60A0A075B6I1 120 aa12.85□□□□□ -0.35
HOXA9-202ENST00000396345 FGF6P10767 208 aa12.85□□□□□ -0.35
HOXA9-202ENST00000396345 RNASEKQ6P5S7 137 aaKnown RBP12.85□□□□□ -0.35
HOXA9-202ENST00000396345 CBLN2Q8IUK8 224 aa12.85□□□□□ -0.35
HOXA9-202ENST00000396345 LINC00269Q8N2A0 174 aa12.85□□□□□ -0.35
HOXA9-202ENST00000396345 C20orf203Q8NBC4 194 aa12.85□□□□□ -0.35
HOXA9-202ENST00000396345 TM2D2Q9BX73 214 aa12.85□□□□□ -0.35
HOXA9-202ENST00000396345 PSCAO43653 123 aa12.84□□□□□ -0.35
HOXA9-202ENST00000396345 ENHOQ6UWT2 76 aa12.84□□□□□ -0.35
HOXA9-202ENST00000396345 RMI2Q96E14 147 aa12.84□□□□□ -0.35
HOXA9-202ENST00000396345 TRAPPC1Q9Y5R8 145 aa12.84□□□□□ -0.35
HOXA9-202ENST00000396345 RAB5AP20339 215 aa12.83□□□□□ -0.36
HOXA9-202ENST00000396345 CLPSL2Q6UWE3 100 aa12.83□□□□□ -0.36
HOXA9-202ENST00000396345 Q8N8P6 123 aa12.83□□□□□ -0.36
HOXA9-202ENST00000396345 IGKV2D-24A0A075B6R9 120 aa12.82□□□□□ -0.36
HOXA9-202ENST00000396345 ZNF25P17030 456 aaPredicted RBP12.82□□□□□ -0.36
HOXA9-202ENST00000396345 TMEM101Q96IK0 257 aa12.82□□□□□ -0.36
HOXA9-202ENST00000396345 ALKBH7Q9BT30 221 aaPredicted RBP12.82□□□□□ -0.36
HOXA9-202ENST00000396345 PRR34Q9NV39 138 aa12.82□□□□□ -0.36
HOXA9-202ENST00000396345 REG3AQ06141 175 aa12.81□□□□□ -0.36
HOXA9-202ENST00000396345 MIAQ16674 131 aa12.81□□□□□ -0.36
HOXA9-202ENST00000396345 MRPL52Q86TS9 123 aaKnown RBP12.81□□□□□ -0.36
HOXA9-202ENST00000396345 TMEM18Q96B42 140 aa12.81□□□□□ -0.36
HOXA9-202ENST00000396345 COX11Q9Y6N1 276 aa12.81□□□□□ -0.36
HOXA9-202ENST00000396345 A0A1B0GVY2 172 aa12.8□□□□□ -0.36
HOXA9-202ENST00000396345 SMAGPQ0VAQ4 97 aa12.8□□□□□ -0.36
HOXA9-202ENST00000396345 OR5A1Q8NGJ0 315 aa12.8□□□□□ -0.36
HOXA9-202ENST00000396345 NXT2Q9NPJ8 142 aaKnown RBP12.8□□□□□ -0.36
HOXA9-202ENST00000396345 IFI27P40305 119 aaPredicted RBP12.79□□□□□ -0.36
HOXA9-202ENST00000396345 C1orf43Q9BWL3 253 aa12.79□□□□□ -0.36
HOXA9-202ENST00000396345 HECTD4Q9Y4D8 3996 aa12.79□□□□□ -0.36
HOXA9-202ENST00000396345 PKD1P98161 4303 aa12.79□□□□□ -0.36
HOXA9-202ENST00000396345 DGAT2L7PQ6IED9 249 aa12.78□□□□□ -0.36
HOXA9-202ENST00000396345 EREGO14944 169 aa12.77□□□□□ -0.37
HOXA9-202ENST00000396345 RPL39P62891 51 aaKnown RBP12.77□□□□□ -0.37
HOXA9-202ENST00000396345 UBE2D4Q9Y2X8 147 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms