RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 TIMM17AQ99595 171 aa10.84□□□□□ -0.67
GPC3-202ENST00000394299 NOP10Q9NPE3 64 aaKnown RBP10.84□□□□□ -0.67
GPC3-202ENST00000394299 RHOHQ15669 191 aa10.84□□□□□ -0.67
GPC3-202ENST00000394299 OR4C5Q8NGB2 326 aa10.84□□□□□ -0.67
GPC3-202ENST00000394299 TMEM141Q96I45 108 aa10.84□□□□□ -0.67
GPC3-202ENST00000394299 RNASE13Q5GAN3 156 aaKnown RBP10.83□□□□□ -0.68
GPC3-202ENST00000394299 IL17DQ8TAD2 202 aa10.83□□□□□ -0.68
GPC3-202ENST00000394299 PTH2Q96A98 100 aa10.83□□□□□ -0.68
GPC3-202ENST00000394299 HSD52Q0P140 79 aa10.82□□□□□ -0.68
GPC3-202ENST00000394299 PIK3CD-AS1Q5SR53 167 aa10.82□□□□□ -0.68
GPC3-202ENST00000394299 FAM104AQ969W3 186 aa10.82□□□□□ -0.68
GPC3-202ENST00000394299 PRADC1Q9BSG0 188 aa10.82□□□□□ -0.68
GPC3-202ENST00000394299 CHAC1Q9BUX1 264 aa10.82□□□□□ -0.68
GPC3-202ENST00000394299 EDA2RQ9HAV5 297 aa10.82□□□□□ -0.68
GPC3-202ENST00000394299 CSNK1G2-AS1Q8NCQ2 148 aa10.82□□□□□ -0.68
GPC3-202ENST00000394299 NAA38Q9BRA0 125 aaKnown RBP10.82□□□□□ -0.68
GPC3-202ENST00000394299 PLAC8L1A1L4L8 177 aa10.81□□□□□ -0.68
GPC3-202ENST00000394299 GCSHP23434 173 aa10.81□□□□□ -0.68
GPC3-202ENST00000394299 TMEM263Q8WUH6 116 aaKnown RBP10.81□□□□□ -0.68
GPC3-202ENST00000394299 IGLV4-3A0A075B6K6 122 aa10.81□□□□□ -0.68
GPC3-202ENST00000394299 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.81□□□□□ -0.68
GPC3-202ENST00000394299 IGKV2-29A2NJV5 120 aaPredicted RBP10.81□□□□□ -0.68
GPC3-202ENST00000394299 FXYD2P54710 66 aa10.81□□□□□ -0.68
GPC3-202ENST00000394299 CMC4P56277 68 aaPredicted RBP10.81□□□□□ -0.68
GPC3-202ENST00000394299 TMEM170BQ5T4T1 132 aa10.81□□□□□ -0.68
GPC3-202ENST00000394299 OR11H2Q8NH07 326 aa10.81□□□□□ -0.68
GPC3-202ENST00000394299 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.8□□□□□ -0.68
GPC3-202ENST00000394299 CHCHD7Q9BUK0 85 aa10.8□□□□□ -0.68
GPC3-202ENST00000394299 RHODO00212 210 aa10.8□□□□□ -0.68
GPC3-202ENST00000394299 VAMP3Q15836 100 aa10.8□□□□□ -0.68
GPC3-202ENST00000394299 RAB37Q96AX2 223 aa10.8□□□□□ -0.68
GPC3-202ENST00000394299 GAGE12BA1L429 117 aa10.79□□□□□ -0.68
GPC3-202ENST00000394299 E9PLD3 99 aa10.79□□□□□ -0.68
GPC3-202ENST00000394299 GAGE7O76087 117 aa10.79□□□□□ -0.68
GPC3-202ENST00000394299 GAGE12FP0CL80 117 aa10.79□□□□□ -0.68
GPC3-202ENST00000394299 GAGE12GP0CL81 117 aa10.79□□□□□ -0.68
GPC3-202ENST00000394299 GAGE12IP0CL82 117 aa10.79□□□□□ -0.68
GPC3-202ENST00000394299 FAM110AQ9BQ89 295 aa10.79□□□□□ -0.68
GPC3-202ENST00000394299 TEP1Q99973 2627 aaKnown RBP10.79□□□□□ -0.68
GPC3-202ENST00000394299 A0A0J9YXV3 536 aa10.79□□□□□ -0.68
GPC3-202ENST00000394299 CRLF1O75462 422 aa10.79□□□□□ -0.68
GPC3-202ENST00000394299 VPS25Q9BRG1 176 aa10.79□□□□□ -0.68
GPC3-202ENST00000394299 HIGD1BQ9P298 99 aa10.79□□□□□ -0.68
GPC3-202ENST00000394299 F8P00451 2351 aa10.78□□□□□ -0.68
GPC3-202ENST00000394299 MYMXA0A1B0GTQ4 84 aa10.78□□□□□ -0.68
GPC3-202ENST00000394299 LINC01549A6NIU2 74 aa10.78□□□□□ -0.68
GPC3-202ENST00000394299 SEC11AP67812 179 aa10.78□□□□□ -0.68
GPC3-202ENST00000394299 PLEKHB2Q96CS7 222 aa10.78□□□□□ -0.68
GPC3-202ENST00000394299 VCX2Q9H322 139 aa10.78□□□□□ -0.68
GPC3-202ENST00000394299 TSPEAR-AS2P59090 65 aa10.77□□□□□ -0.68
GPC3-202ENST00000394299 OCIAD2Q56VL3 154 aa10.77□□□□□ -0.68
GPC3-202ENST00000394299 IGHV3-64A0A075B6Q5 118 aa10.77□□□□□ -0.69
GPC3-202ENST00000394299 SLC25A29Q8N8R3 303 aa10.77□□□□□ -0.69
GPC3-202ENST00000394299 AMMECR1LQ6DCA0 310 aa10.76□□□□□ -0.69
GPC3-202ENST00000394299 ZNF815PA8K554 130 aa10.76□□□□□ -0.69
GPC3-202ENST00000394299 K7ERJ3 54 aa10.76□□□□□ -0.69
GPC3-202ENST00000394299 RRN3P1Q2M238 152 aa10.76□□□□□ -0.69
GPC3-202ENST00000394299 LOC100131303A0A0U1RQF7 123 aa10.75□□□□□ -0.69
GPC3-202ENST00000394299 TRGV2A0A075B6R0 118 aa10.75□□□□□ -0.69
GPC3-202ENST00000394299 GAGE12JA6NER3 117 aa10.75□□□□□ -0.69
GPC3-202ENST00000394299 GAGE4Q13068 117 aa10.75□□□□□ -0.69
GPC3-202ENST00000394299 GAGE5Q13069 117 aa10.75□□□□□ -0.69
GPC3-202ENST00000394299 DAZ2Q13117 558 aaKnown RBP10.75□□□□□ -0.69
GPC3-202ENST00000394299 GAGE13Q4V321 117 aa10.75□□□□□ -0.69
GPC3-202ENST00000394299 CEND1Q8N111 149 aa10.75□□□□□ -0.69
GPC3-202ENST00000394299 C16orf74Q96GX8 76 aa10.75□□□□□ -0.69
GPC3-202ENST00000394299 UBE2D4Q9Y2X8 147 aa10.75□□□□□ -0.69
GPC3-202ENST00000394299 A6NDN8 102 aa10.74□□□□□ -0.69
GPC3-202ENST00000394299 DNAJC30Q96LL9 226 aa10.74□□□□□ -0.69
GPC3-202ENST00000394299 HIST1H4GQ99525 98 aa10.74□□□□□ -0.69
GPC3-202ENST00000394299 C1QTNF4Q9BXJ3 329 aa10.74□□□□□ -0.69
GPC3-202ENST00000394299 TRBV7-3A0A075B6L6 115 aa10.74□□□□□ -0.69
GPC3-202ENST00000394299 TRAV4A0A0B4J268 109 aa10.74□□□□□ -0.69
GPC3-202ENST00000394299 PAPPA-AS1Q5QFB9 102 aa10.74□□□□□ -0.69
GPC3-202ENST00000394299 H3BUT2 72 aa10.73□□□□□ -0.69
GPC3-202ENST00000394299 K7EQD1 137 aa10.73□□□□□ -0.69
GPC3-202ENST00000394299 ZNF22P17026 224 aaPredicted RBP10.73□□□□□ -0.69
GPC3-202ENST00000394299 NFE4Q86UQ8 179 aa10.73□□□□□ -0.69
GPC3-202ENST00000394299 AMELXQ99217 191 aa10.73□□□□□ -0.69
GPC3-202ENST00000394299 PYGO1Q9Y3Y4 419 aa10.73□□□□□ -0.69
GPC3-202ENST00000394299 H3BRM9 83 aa10.73□□□□□ -0.69
GPC3-202ENST00000394299 LINC00694P0DN24 101 aa10.73□□□□□ -0.69
GPC3-202ENST00000394299 NTM-AS1Q6ZSK4 140 aa10.73□□□□□ -0.69
GPC3-202ENST00000394299 Q6ZUT4 128 aa10.73□□□□□ -0.69
GPC3-202ENST00000394299 NHP2Q9NX24 153 aaKnown RBP10.73□□□□□ -0.69
GPC3-202ENST00000394299 SCGB1D4Q6XE38 83 aa10.72□□□□□ -0.69
GPC3-202ENST00000394299 CITED1Q99966 193 aa10.72□□□□□ -0.69
GPC3-202ENST00000394299 TM2D2Q9BX73 214 aa10.72□□□□□ -0.69
GPC3-202ENST00000394299 TMEM223A0PJW6 202 aa10.71□□□□□ -0.69
GPC3-202ENST00000394299 HERVK_113P61574 105 aa10.71□□□□□ -0.69
GPC3-202ENST00000394299 C9orf118A6NHY6 69 aa10.7□□□□□ -0.7
GPC3-202ENST00000394299 RPL36AP83881 106 aaKnown RBP10.7□□□□□ -0.7
GPC3-202ENST00000394299 RPL36ALQ969Q0 106 aaKnown RBP10.7□□□□□ -0.7
GPC3-202ENST00000394299 OVOL2Q9BRP0 275 aa10.7□□□□□ -0.7
GPC3-202ENST00000394299 DEFB130BP0DP73 79 aa10.7□□□□□ -0.7
GPC3-202ENST00000394299 DEFB130AP0DP74 79 aa10.7□□□□□ -0.7
GPC3-202ENST00000394299 C9orf66Q5T8R8 295 aa10.7□□□□□ -0.7
GPC3-202ENST00000394299 TMEM238C9JI98 176 aa10.69□□□□□ -0.7
GPC3-202ENST00000394299 J3QQQ9 107 aa10.69□□□□□ -0.7
GPC3-202ENST00000394299 SMIM13P0DJ93 91 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms