RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CASC2Q6XLA1 102 aa8.98□□□□□ -0.97
SYNPO-202ENST00000394243 ALPK3Q96L96 1907 aa8.98□□□□□ -0.97
SYNPO-202ENST00000394243 ZNF295-AS1Q8N0V1 137 aa8.98□□□□□ -0.97
SYNPO-202ENST00000394243 LINC00467Q9BRT7 94 aa8.98□□□□□ -0.97
SYNPO-202ENST00000394243 IGHV4-38-2P0DP08 117 aa8.97□□□□□ -0.97
SYNPO-202ENST00000394243 IGFL3Q6UXB1 125 aa8.97□□□□□ -0.97
SYNPO-202ENST00000394243 P0C879 139 aa8.97□□□□□ -0.97
SYNPO-202ENST00000394243 IGLV4-3A0A075B6K6 122 aa8.97□□□□□ -0.97
SYNPO-202ENST00000394243 A0A0J9YWU9 116 aa8.97□□□□□ -0.97
SYNPO-202ENST00000394243 SMIM26A0A096LP01 95 aa8.97□□□□□ -0.97
SYNPO-202ENST00000394243 UNQ9165/PRO28630Q6UXU0 137 aa8.97□□□□□ -0.97
SYNPO-202ENST00000394243 ZFAND3Q9H8U3 227 aa8.97□□□□□ -0.97
SYNPO-202ENST00000394243 ZFAND2AQ8N6M9 145 aa8.97□□□□□ -0.97
SYNPO-202ENST00000394243 TRBV27A0A0K0K1C4 114 aa8.96□□□□□ -0.97
SYNPO-202ENST00000394243 FAM19A3Q7Z5A8 133 aa8.96□□□□□ -0.97
SYNPO-202ENST00000394243 SPRY4Q9C004 299 aa8.96□□□□□ -0.97
SYNPO-202ENST00000394243 RIF1Q5UIP0 2472 aaKnown RBP8.96□□□□□ -0.97
SYNPO-202ENST00000394243 U3KQK5 164 aa8.96□□□□□ -0.98
SYNPO-202ENST00000394243 K7EMT4 169 aa8.96□□□□□ -0.98
SYNPO-202ENST00000394243 CRIP1P50238 77 aa8.95□□□□□ -0.98
SYNPO-202ENST00000394243 RNF185Q96GF1 192 aa8.95□□□□□ -0.98
SYNPO-202ENST00000394243 A0A0J9YX75 114 aa8.95□□□□□ -0.98
SYNPO-202ENST00000394243 H7C423 109 aa8.95□□□□□ -0.98
SYNPO-202ENST00000394243 LST1O00453 97 aa8.95□□□□□ -0.98
SYNPO-202ENST00000394243 PRR15LQ9BU68 103 aa8.95□□□□□ -0.98
SYNPO-202ENST00000394243 PRR14LQ5THK1 2151 aa8.95□□□□□ -0.98
SYNPO-202ENST00000394243 C3orf84H3BNL1 204 aa8.94□□□□□ -0.98
SYNPO-202ENST00000394243 K7ERS5 55 aa8.94□□□□□ -0.98
SYNPO-202ENST00000394243 DEFB4AO15263 64 aa8.94□□□□□ -0.98
SYNPO-202ENST00000394243 UFSP1Q6NVU6 142 aa8.94□□□□□ -0.98
SYNPO-202ENST00000394243 Q6Q795 121 aa8.94□□□□□ -0.98
SYNPO-202ENST00000394243 TMEM131Q92545 1883 aa8.94□□□□□ -0.98
SYNPO-202ENST00000394243 TRBV10-1A0A0K0K1A3 114 aa8.94□□□□□ -0.98
SYNPO-202ENST00000394243 CCL18P55774 89 aa8.94□□□□□ -0.98
SYNPO-202ENST00000394243 IGHV4-30-2A0A087WSY4 118 aa8.94□□□□□ -0.98
SYNPO-202ENST00000394243 NOTCH4Q99466 2003 aa8.94□□□□□ -0.98
SYNPO-202ENST00000394243 K7ENP7 123 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 CCKP06307 115 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 PMAIP1Q13794 54 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 GRNP28799 593 aaKnown RBP8.93□□□□□ -0.98
SYNPO-202ENST00000394243 FAM19A5Q7Z5A7 132 aaPredicted RBP8.93□□□□□ -0.98
SYNPO-202ENST00000394243 GPHB5Q86YW7 130 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 LRCOL1A6NCL2 159 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 ZMAT4Q9H898 229 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 IGLV1-47P01700 117 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 TANC1Q9C0D5 1861 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 NUP210Q8TEM1 1887 aaPredicted RBP8.93□□□□□ -0.98
SYNPO-202ENST00000394243 A8MZ25 164 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 SOSTDC1Q6X4U4 206 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 C1orf158Q8N1D5 194 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 LINC00269Q8N2A0 174 aa8.93□□□□□ -0.98
SYNPO-202ENST00000394243 BRWD1-AS2P59051 145 aa8.92□□□□□ -0.98
SYNPO-202ENST00000394243 ADAMTS9Q9P2N4 1935 aa8.92□□□□□ -0.98
SYNPO-202ENST00000394243 A0A096LNI7 61 aa8.92□□□□□ -0.98
SYNPO-202ENST00000394243 SERP1Q9Y6X1 66 aa8.92□□□□□ -0.98
SYNPO-202ENST00000394243 EML5Q05BV3 1969 aa8.92□□□□□ -0.98
SYNPO-202ENST00000394243 C6orf99Q4VX62 202 aa8.92□□□□□ -0.98
SYNPO-202ENST00000394243 Q6ZPA2 131 aa8.92□□□□□ -0.98
SYNPO-202ENST00000394243 Q6ZS46 218 aa8.92□□□□□ -0.98
SYNPO-202ENST00000394243 IBA57-AS1B1ANH7 110 aa8.92□□□□□ -0.98
SYNPO-202ENST00000394243 HIGD2AQ9BW72 106 aa8.92□□□□□ -0.98
SYNPO-202ENST00000394243 C4orf48Q5BLP8 95 aa8.91□□□□□ -0.98
SYNPO-202ENST00000394243 PCNX3Q9H6A9 2034 aa8.91□□□□□ -0.98
SYNPO-202ENST00000394243 F8W735 103 aaPredicted RBP8.91□□□□□ -0.98
SYNPO-202ENST00000394243 IGF1P05019 195 aa8.91□□□□□ -0.98
SYNPO-202ENST00000394243 RETNQ9HD89 108 aa8.91□□□□□ -0.98
SYNPO-202ENST00000394243 Q8N7P7 452 aa8.91□□□□□ -0.98
SYNPO-202ENST00000394243 ZNF106Q9H2Y7 1883 aaKnown RBP8.91□□□□□ -0.98
SYNPO-202ENST00000394243 DCANP1Q8TF63 244 aa8.9□□□□□ -0.98
SYNPO-202ENST00000394243 IGHV4-61A0A0C4DH41 118 aa8.9□□□□□ -0.98
SYNPO-202ENST00000394243 C9orf66Q5T8R8 295 aa8.9□□□□□ -0.98
SYNPO-202ENST00000394243 B9D2Q9BPU9 175 aa8.9□□□□□ -0.98
SYNPO-202ENST00000394243 FAM30AQ9NZY2 134 aa8.9□□□□□ -0.98
SYNPO-202ENST00000394243 MIFP14174 115 aa8.9□□□□□ -0.98
SYNPO-202ENST00000394243 TRBV6-5A0A0K0K1A5 114 aa8.9□□□□□ -0.99
SYNPO-202ENST00000394243 RNF138Q8WVD3 245 aa8.9□□□□□ -0.99
SYNPO-202ENST00000394243 MRPS36P82909 103 aaKnown RBP8.9□□□□□ -0.99
SYNPO-202ENST00000394243 PRO0255Q9UI72 69 aa8.89□□□□□ -0.99
SYNPO-202ENST00000394243 REG3AQ06141 175 aa8.89□□□□□ -0.99
SYNPO-202ENST00000394243 Q6JHZ5 121 aa8.89□□□□□ -0.99
SYNPO-202ENST00000394243 LYRM9A8MSI8 78 aa8.89□□□□□ -0.99
SYNPO-202ENST00000394243 DEFB135Q30KP9 77 aa8.89□□□□□ -0.99
SYNPO-202ENST00000394243 C22orf34Q6ZV56 151 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 Q6ZTI0 123 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 WFDC13Q8IUB5 93 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 LINC00526Q96FQ7 95 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 CCDC140Q96MF4 163 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 LTBP1Q14766 1721 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 SORL1Q92673 2214 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 M0QY20 66 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 Q8N976 141 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 SMIM11BQ8TCY0 68 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 CHCHD10Q8WYQ3 142 aaPredicted RBP8.88□□□□□ -0.99
SYNPO-202ENST00000394243 C2orf16Q68DN1 1984 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 LOC107984640A0A0U1RRK4 108 aa8.88□□□□□ -0.99
SYNPO-202ENST00000394243 NRACQ8N912 160 aa8.87□□□□□ -0.99
SYNPO-202ENST00000394243 IGKV2-24A0A0C4DH68 120 aa8.87□□□□□ -0.99
SYNPO-202ENST00000394243 CSDC2Q9Y534 153 aaKnown RBP8.87□□□□□ -0.99
SYNPO-202ENST00000394243 XAGE1AQ9HD64 81 aa8.87□□□□□ -0.99
SYNPO-202ENST00000394243 KIF26AQ9ULI4 1882 aaPredicted RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms