RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 A0A0U1RQV1 116 aa10.35□□□□□ -0.75
COL4A1-201ENST00000375820 C10orf99Q6UWK7 81 aa10.35□□□□□ -0.75
COL4A1-201ENST00000375820 SPINK6Q6UWN8 80 aa10.35□□□□□ -0.75
COL4A1-201ENST00000375820 DENND4AQ7Z401 1863 aa10.35□□□□□ -0.75
COL4A1-201ENST00000375820 ENHOQ6UWT2 76 aa10.35□□□□□ -0.75
COL4A1-201ENST00000375820 TRBV10-1A0A0K0K1A3 114 aa10.34□□□□□ -0.75
COL4A1-201ENST00000375820 DEFB131BA0A096LNP1 70 aa10.34□□□□□ -0.75
COL4A1-201ENST00000375820 SPATA12Q7Z6I5 190 aa10.34□□□□□ -0.75
COL4A1-201ENST00000375820 IGKV2-28A0A075B6P5 120 aa10.34□□□□□ -0.75
COL4A1-201ENST00000375820 C3orf84H3BNL1 204 aa10.34□□□□□ -0.75
COL4A1-201ENST00000375820 IGKV2D-28P01615 120 aa10.34□□□□□ -0.75
COL4A1-201ENST00000375820 HIGD1BQ9P298 99 aa10.34□□□□□ -0.75
COL4A1-201ENST00000375820 C20orf197Q8N268 126 aa10.33□□□□□ -0.76
COL4A1-201ENST00000375820 TANC2Q9HCD6 1990 aa10.33□□□□□ -0.76
COL4A1-201ENST00000375820 G3V4G9 280 aa10.33□□□□□ -0.76
COL4A1-201ENST00000375820 IGHV4-30-4P0DP06 118 aa10.33□□□□□ -0.76
COL4A1-201ENST00000375820 IGHV4-31P0DP07 118 aa10.33□□□□□ -0.76
COL4A1-201ENST00000375820 C3orf22Q8N5N4 141 aa10.33□□□□□ -0.76
COL4A1-201ENST00000375820 A8MZ25 164 aa10.33□□□□□ -0.76
COL4A1-201ENST00000375820 USP17L23D6RBM5 183 aa10.33□□□□□ -0.76
COL4A1-201ENST00000375820 GDF5OSQ5U4N7 250 aa10.32□□□□□ -0.76
COL4A1-201ENST00000375820 C1orf158Q8N1D5 194 aa10.32□□□□□ -0.76
COL4A1-201ENST00000375820 TANC1Q9C0D5 1861 aa10.32□□□□□ -0.76
COL4A1-201ENST00000375820 CDKN2A-AS1Q9UH64 79 aa10.32□□□□□ -0.76
COL4A1-201ENST00000375820 COA6Q5JTJ3 125 aaKnown RBP10.32□□□□□ -0.76
COL4A1-201ENST00000375820 C19orf71A6NCJ1 209 aa10.31□□□□□ -0.76
COL4A1-201ENST00000375820 H3BQ85 93 aa10.31□□□□□ -0.76
COL4A1-201ENST00000375820 MT-ATP8P03928 68 aa10.31□□□□□ -0.76
COL4A1-201ENST00000375820 PRM2P04554 102 aa10.31□□□□□ -0.76
COL4A1-201ENST00000375820 MED14OSP0DP75 135 aa10.31□□□□□ -0.76
COL4A1-201ENST00000375820 NDUFV3P56181 108 aaKnown RBP10.31□□□□□ -0.76
COL4A1-201ENST00000375820 NCOA6Q14686 2063 aaPredicted RBP10.31□□□□□ -0.76
COL4A1-201ENST00000375820 Q8N976 141 aa10.31□□□□□ -0.76
COL4A1-201ENST00000375820 PRR4Q16378 134 aa10.3□□□□□ -0.76
COL4A1-201ENST00000375820 Q8NA96 180 aa10.3□□□□□ -0.76
COL4A1-201ENST00000375820 ZNF106Q9H2Y7 1883 aaKnown RBP10.3□□□□□ -0.76
COL4A1-201ENST00000375820 DAZAP2Q15038 168 aaPredicted RBP10.3□□□□□ -0.76
COL4A1-201ENST00000375820 C1orf229Q6ZS94 237 aaPredicted RBP10.3□□□□□ -0.76
COL4A1-201ENST00000375820 H3BT86 120 aa10.3□□□□□ -0.76
COL4A1-201ENST00000375820 UFSP1Q6NVU6 142 aa10.29□□□□□ -0.76
COL4A1-201ENST00000375820 NEXN-AS1Q8NBZ9 246 aa10.29□□□□□ -0.76
COL4A1-201ENST00000375820 IGLC6P0CF74 106 aa10.29□□□□□ -0.76
COL4A1-201ENST00000375820 C22orf34Q6ZV56 151 aa10.29□□□□□ -0.76
COL4A1-201ENST00000375820 WFDC10AQ9H1F0 79 aa10.28□□□□□ -0.76
COL4A1-201ENST00000375820 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.28□□□□□ -0.76
COL4A1-201ENST00000375820 SPANXCQ9NY87 97 aa10.28□□□□□ -0.76
COL4A1-201ENST00000375820 NUP210Q8TEM1 1887 aaPredicted RBP10.27□□□□□ -0.76
COL4A1-201ENST00000375820 RPL37AP8A6NKH3 93 aa10.27□□□□□ -0.77
COL4A1-201ENST00000375820 RETNQ9HD89 108 aa10.27□□□□□ -0.77
COL4A1-201ENST00000375820 SNURFQ9Y675 71 aa10.27□□□□□ -0.77
COL4A1-201ENST00000375820 PLXNB3Q9ULL4 1909 aa10.27□□□□□ -0.77
COL4A1-201ENST00000375820 LOC100131303A0A0U1RQF7 123 aa10.27□□□□□ -0.77
COL4A1-201ENST00000375820 HILS1P60008 231 aa10.27□□□□□ -0.77
COL4A1-201ENST00000375820 DEFB114Q30KQ6 69 aa10.26□□□□□ -0.77
COL4A1-201ENST00000375820 C18orf65Q6ZTR6 163 aa10.26□□□□□ -0.77
COL4A1-201ENST00000375820 WFDC13Q8IUB5 93 aa10.26□□□□□ -0.77
COL4A1-201ENST00000375820 BBC3Q96PG8 261 aaPredicted RBP10.26□□□□□ -0.77
COL4A1-201ENST00000375820 C14orf177Q52M58 125 aa10.26□□□□□ -0.77
COL4A1-201ENST00000375820 MAPKAPK5-AS1Q8N8E1 139 aa10.25□□□□□ -0.77
COL4A1-201ENST00000375820 WNK1Q9H4A3 2382 aa10.25□□□□□ -0.77
COL4A1-201ENST00000375820 INSL3P51460 131 aa10.25□□□□□ -0.77
COL4A1-201ENST00000375820 IGLV2-8P01709 118 aa10.25□□□□□ -0.77
COL4A1-201ENST00000375820 IGLV9-49A0A0B4J1Y8 123 aa10.25□□□□□ -0.77
COL4A1-201ENST00000375820 LINC00643Q86TS7 51 aa10.25□□□□□ -0.77
COL4A1-201ENST00000375820 LMO4P61968 165 aa10.25□□□□□ -0.77
COL4A1-201ENST00000375820 IGLV4-3A0A075B6K6 122 aa10.24□□□□□ -0.77
COL4A1-201ENST00000375820 CFAP126Q5VTH2 177 aa10.24□□□□□ -0.77
COL4A1-201ENST00000375820 Q6YL49 198 aa10.24□□□□□ -0.77
COL4A1-201ENST00000375820 TMEM223A0PJW6 202 aa10.24□□□□□ -0.77
COL4A1-201ENST00000375820 ATRXP46100 2492 aa10.24□□□□□ -0.77
COL4A1-201ENST00000375820 C9orf85Q96MD7 179 aa10.24□□□□□ -0.77
COL4A1-201ENST00000375820 ZFHX2Q9C0A1 2572 aaPredicted RBP10.23□□□□□ -0.77
COL4A1-201ENST00000375820 TMEM89A2RUT3 159 aa10.23□□□□□ -0.77
COL4A1-201ENST00000375820 TRIAP1O43715 76 aa10.23□□□□□ -0.77
COL4A1-201ENST00000375820 C6orf99Q4VX62 202 aa10.23□□□□□ -0.77
COL4A1-201ENST00000375820 POM121L12Q8N7R1 296 aa10.23□□□□□ -0.77
COL4A1-201ENST00000375820 TNFRSF13BO14836 293 aaPredicted RBP10.23□□□□□ -0.77
COL4A1-201ENST00000375820 CCKP06307 115 aa10.23□□□□□ -0.77
COL4A1-201ENST00000375820 ZNF22P17026 224 aaPredicted RBP10.23□□□□□ -0.77
COL4A1-201ENST00000375820 Q6ZSR3 168 aa10.23□□□□□ -0.77
COL4A1-201ENST00000375820 ODF3BA8MYP8 253 aa10.22□□□□□ -0.77
COL4A1-201ENST00000375820 UBE2D1P51668 147 aa10.22□□□□□ -0.77
COL4A1-201ENST00000375820 LINC00308Q8TCZ7 52 aa10.22□□□□□ -0.77
COL4A1-201ENST00000375820 A0A1B0GXF2 115 aa10.22□□□□□ -0.77
COL4A1-201ENST00000375820 LY6G6CO95867 125 aa10.22□□□□□ -0.77
COL4A1-201ENST00000375820 FAM236DA0A1B0GTK5 79 aa10.22□□□□□ -0.77
COL4A1-201ENST00000375820 FAM236CP0DP71 79 aa10.22□□□□□ -0.77
COL4A1-201ENST00000375820 FAM208BQ5VWN6 2430 aa10.21□□□□□ -0.77
COL4A1-201ENST00000375820 BRWD1-AS2P59051 145 aa10.21□□□□□ -0.77
COL4A1-201ENST00000375820 UBE2D4Q9Y2X8 147 aa10.21□□□□□ -0.77
COL4A1-201ENST00000375820 MED12LQ86YW9 2145 aa10.21□□□□□ -0.77
COL4A1-201ENST00000375820 KIAA1549Q9HCM3 1950 aa10.21□□□□□ -0.77
COL4A1-201ENST00000375820 ZFAND3Q9H8U3 227 aa10.21□□□□□ -0.77
COL4A1-201ENST00000375820 TRBV6-8A0A0A6YYG3 113 aa10.21□□□□□ -0.78
COL4A1-201ENST00000375820 COL4A3Q01955 1670 aa10.21□□□□□ -0.78
COL4A1-201ENST00000375820 K7EQG2 157 aa10.21□□□□□ -0.78
COL4A1-201ENST00000375820 CRIP1P50238 77 aa10.2□□□□□ -0.78
COL4A1-201ENST00000375820 Q6ZPA2 131 aa10.2□□□□□ -0.78
COL4A1-201ENST00000375820 LYRM9A8MSI8 78 aa10.2□□□□□ -0.78
COL4A1-201ENST00000375820 PDE6GP18545 87 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms