RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 IGHV3-73A0A0B4J1V6 119 aa15.48■□□□□ 0.07
UPF3A-202ENST00000375299 TTC32Q5I0X7 151 aa15.48■□□□□ 0.07
UPF3A-202ENST00000375299 RNF152Q8N8N0 203 aa15.48■□□□□ 0.07
UPF3A-202ENST00000375299 VSIG2Q96IQ7 327 aa15.48■□□□□ 0.07
UPF3A-202ENST00000375299 CCL19Q99731 98 aa15.48■□□□□ 0.07
UPF3A-202ENST00000375299 TINCRA0A1B0GVN0 87 aa15.47■□□□□ 0.07
UPF3A-202ENST00000375299 B5MCH6 92 aa15.47■□□□□ 0.07
UPF3A-202ENST00000375299 IFITM1P13164 125 aa15.47■□□□□ 0.07
UPF3A-202ENST00000375299 PROK1P58294 105 aa15.47■□□□□ 0.07
UPF3A-202ENST00000375299 SPTAN1Q13813 2472 aaKnown RBP15.46■□□□□ 0.07
UPF3A-202ENST00000375299 NPC2P61916 151 aa15.46■□□□□ 0.06
UPF3A-202ENST00000375299 TNFRSF18Q9Y5U5 241 aa15.46■□□□□ 0.06
UPF3A-202ENST00000375299 RBMY1A1P0DJD3 496 aaKnown RBP15.45■□□□□ 0.06
UPF3A-202ENST00000375299 RBMY1CP0DJD4 496 aa15.45■□□□□ 0.06
UPF3A-202ENST00000375299 RBMY1FQ15415 496 aaKnown RBP15.45■□□□□ 0.06
UPF3A-202ENST00000375299 Q6ZSV7 163 aa15.45■□□□□ 0.06
UPF3A-202ENST00000375299 COL12A1Q99715 3063 aa15.45■□□□□ 0.06
UPF3A-202ENST00000375299 A8MZ25 164 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 YAE1D1Q9NRH1 226 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 IGHV4-30-2A0A087WSY4 118 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 C10orf99Q6UWK7 81 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 TMEM61Q8N0U2 210 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 CLEC2BQ92478 149 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 LST1O00453 97 aa15.43■□□□□ 0.06
UPF3A-202ENST00000375299 CHCHD7Q9BUK0 85 aa15.43■□□□□ 0.06
UPF3A-202ENST00000375299 SPANXA1Q9NS26 97 aa15.43■□□□□ 0.06
UPF3A-202ENST00000375299 UBE2D4Q9Y2X8 147 aa15.43■□□□□ 0.06
UPF3A-202ENST00000375299 DOPEY2Q9Y3R5 2298 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE12JA6NER3 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE7O76087 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE12FP0CL80 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE12GP0CL81 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE12IP0CL82 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 ATP5J2P56134 94 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE4Q13068 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 MRPL23Q16540 153 aaKnown RBP15.42■□□□□ 0.06
UPF3A-202ENST00000375299 TIMM17BO60830 172 aa15.41■□□□□ 0.06
UPF3A-202ENST00000375299 MSMBP08118 114 aa15.41■□□□□ 0.06
UPF3A-202ENST00000375299 SYNJ2BPP57105 145 aa15.41■□□□□ 0.06
UPF3A-202ENST00000375299 CCDC179H3BU77 68 aa15.41■□□□□ 0.06
UPF3A-202ENST00000375299 HTN1P15515 57 aa15.41■□□□□ 0.06
UPF3A-202ENST00000375299 CELSR2Q9HCU4 2923 aa15.4■□□□□ 0.06
UPF3A-202ENST00000375299 DEFB121Q5J5C9 76 aa15.4■□□□□ 0.06
UPF3A-202ENST00000375299 MAP1AP78559 2803 aaPredicted RBP15.4■□□□□ 0.06
UPF3A-202ENST00000375299 NACAE9PAV3 2078 aa15.39■□□□□ 0.06
UPF3A-202ENST00000375299 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.39■□□□□ 0.05
UPF3A-202ENST00000375299 FAM240AA0A1B0GVK7 77 aa15.39■□□□□ 0.05
UPF3A-202ENST00000375299 IGKV2-29A2NJV5 120 aaPredicted RBP15.39■□□□□ 0.05
UPF3A-202ENST00000375299 TMEM89A2RUT3 159 aa15.39■□□□□ 0.05
UPF3A-202ENST00000375299 KNCNA6PVL3 124 aa15.39■□□□□ 0.05
UPF3A-202ENST00000375299 Q9UF83 564 aa15.39■□□□□ 0.05
UPF3A-202ENST00000375299 AVPP01185 164 aa15.38■□□□□ 0.05
UPF3A-202ENST00000375299 DUX5Q96PT3 197 aa15.37■□□□□ 0.05
UPF3A-202ENST00000375299 LINC00467Q9BRT7 94 aa15.37■□□□□ 0.05
UPF3A-202ENST00000375299 Q6ZSN1 163 aa15.36■□□□□ 0.05
UPF3A-202ENST00000375299 DUX3Q96PT4 197 aa15.36■□□□□ 0.05
UPF3A-202ENST00000375299 CFAP46Q8IYW2 2715 aa15.35■□□□□ 0.05
UPF3A-202ENST00000375299 NDUFA1O15239 70 aa15.35■□□□□ 0.05
UPF3A-202ENST00000375299 IGHV4-59P01825 116 aa15.35■□□□□ 0.05
UPF3A-202ENST00000375299 DAND5Q8N907 189 aa15.35■□□□□ 0.05
UPF3A-202ENST00000375299 CDKN2A-AS1Q9UH64 79 aa15.35■□□□□ 0.05
UPF3A-202ENST00000375299 PKD1L2Q7Z442 2459 aa15.34■□□□□ 0.05
UPF3A-202ENST00000375299 PIK3CD-AS1Q5SR53 167 aa15.34■□□□□ 0.05
UPF3A-202ENST00000375299 ZNF415Q09FC8 603 aa15.34■□□□□ 0.05
UPF3A-202ENST00000375299 PIEZO1Q92508 2521 aa15.33■□□□□ 0.05
UPF3A-202ENST00000375299 PRM2P04554 102 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 TIRAPP58753 221 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 IGLV5-45A0A087WSX0 123 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 B4DSR2 109 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 HOXD3P31249 432 aaPredicted RBP15.33■□□□□ 0.04
UPF3A-202ENST00000375299 TMEM101Q96IK0 257 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 SORL1Q92673 2214 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 IGHV3-38A0A0C4DH36 116 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 CITED2Q99967 270 aaPredicted RBP15.32■□□□□ 0.04
UPF3A-202ENST00000375299 SPG11Q96JI7 2443 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 A8MTW9 85 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 DEFB131AP59861 70 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 DEFB112Q30KQ8 113 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 DNAJC30Q96LL9 226 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 RBMY1BA6NDE4 496 aaKnown RBP15.31■□□□□ 0.04
UPF3A-202ENST00000375299 RBMY1EA6NEQ0 496 aaKnown RBP15.31■□□□□ 0.04
UPF3A-202ENST00000375299 RBMY1DP0C7P1 496 aaKnown RBP15.31■□□□□ 0.04
UPF3A-202ENST00000375299 CIRBPQ14011 172 aaKnown RBP15.31■□□□□ 0.04
UPF3A-202ENST00000375299 IGHV3-53P01767 116 aa15.29■□□□□ 0.04
UPF3A-202ENST00000375299 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.29■□□□□ 0.04
UPF3A-202ENST00000375299 LINC00308Q8TCZ7 52 aa15.29■□□□□ 0.04
UPF3A-202ENST00000375299 CRYBG3Q68DQ2 2970 aa15.29■□□□□ 0.04
UPF3A-202ENST00000375299 FLNCQ14315 2725 aa15.29■□□□□ 0.04
UPF3A-202ENST00000375299 TRBV7-7A0A0K0K1E9 115 aa15.29■□□□□ 0.04
UPF3A-202ENST00000375299 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.27■□□□□ 0.042e-8■■■■□ 23.5
UPF3A-202ENST00000375299 COX6A2Q02221 97 aa15.27■□□□□ 0.03
UPF3A-202ENST00000375299 Q9H8V8 135 aa15.27■□□□□ 0.03
UPF3A-202ENST00000375299 COX7A2LO14548 114 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 DGAT2L7PQ6IED9 249 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 NRGNQ92686 78 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 DOPEY1Q5JWR5 2465 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 IGLV5-39A0A0G2JS06 123 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 UBE2E2Q96LR5 201 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 C11orf72Q8NBR9 251 aa15.25■□□□□ 0.03
UPF3A-202ENST00000375299 IGHV3OR16-12A0A075B7B8 117 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms