RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 G3V4G9 280 aa6.85□□□□□ -1.31
SYNE1-205ENST00000367251 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-205ENST00000367251 TRBV10-2A0A0K0K1G8 114 aa6.85□□□□□ -1.31
SYNE1-205ENST00000367251 CRYGDP07320 174 aa6.84□□□□□ -1.31
SYNE1-205ENST00000367251 LMO4P61968 165 aa6.84□□□□□ -1.31
SYNE1-205ENST00000367251 HIGD2BQ4VC39 106 aa6.84□□□□□ -1.31
SYNE1-205ENST00000367251 HIVEP3Q5T1R4 2406 aa6.84□□□□□ -1.31
SYNE1-205ENST00000367251 A0A0B4J2C4 111 aa6.84□□□□□ -1.31
SYNE1-205ENST00000367251 ZNF80P51504 273 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-205ENST00000367251 FOXI1Q12951 378 aa6.84□□□□□ -1.31
SYNE1-205ENST00000367251 FAM19A1Q7Z5A9 133 aa6.84□□□□□ -1.31
SYNE1-205ENST00000367251 FAM110AQ9BQ89 295 aa6.84□□□□□ -1.31
SYNE1-205ENST00000367251 LRRC75A-AS1Q8N1F1 130 aa6.84□□□□□ -1.31
SYNE1-205ENST00000367251 RPL39P62891 51 aaKnown RBP6.84□□□□□ -1.32
SYNE1-205ENST00000367251 LOXL1Q08397 574 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-205ENST00000367251 SPINK6Q6UWN8 80 aa6.83□□□□□ -1.32
SYNE1-205ENST00000367251 SND1-IT1Q9HBX3 110 aa6.83□□□□□ -1.32
SYNE1-205ENST00000367251 WISP2O76076 250 aa6.83□□□□□ -1.32
SYNE1-205ENST00000367251 DNAJC9-AS1A6NH13 148 aa6.83□□□□□ -1.32
SYNE1-205ENST00000367251 NEXN-AS1Q8NBZ9 246 aa6.83□□□□□ -1.32
SYNE1-205ENST00000367251 TP53TG3Q9ULZ0 132 aa6.83□□□□□ -1.32
SYNE1-205ENST00000367251 H7C423 109 aa6.82□□□□□ -1.32
SYNE1-205ENST00000367251 UNQ9165/PRO28630Q6UXU0 137 aa6.82□□□□□ -1.32
SYNE1-205ENST00000367251 RNASE8Q8TDE3 154 aaKnown RBP6.82□□□□□ -1.32
SYNE1-205ENST00000367251 TMEM263Q8WUH6 116 aaKnown RBP6.82□□□□□ -1.32
SYNE1-205ENST00000367251 SPANXB1Q9NS25 103 aaPredicted RBP6.82□□□□□ -1.32
SYNE1-205ENST00000367251 PRO0255Q9UI72 69 aa6.82□□□□□ -1.32
SYNE1-205ENST00000367251 DIRC1Q969H9 104 aa6.82□□□□□ -1.32
SYNE1-205ENST00000367251 LRP4O75096 1905 aa6.82□□□□□ -1.32
SYNE1-205ENST00000367251 F8P00451 2351 aa6.82□□□□□ -1.32
SYNE1-205ENST00000367251 MALRD1Q5VYJ5 2156 aa6.82□□□□□ -1.32
SYNE1-205ENST00000367251 NDUFA11Q86Y39 141 aa6.82□□□□□ -1.32
SYNE1-205ENST00000367251 ZFAND3Q9H8U3 227 aa6.82□□□□□ -1.32
SYNE1-205ENST00000367251 USP17L23D6RBM5 183 aa6.82□□□□□ -1.32
SYNE1-205ENST00000367251 JMJD7-PLA2G4BH0Y9G9 81 aa6.81□□□□□ -1.32
SYNE1-205ENST00000367251 TRAV26-1A0A087WT03 109 aa6.81□□□□□ -1.32
SYNE1-205ENST00000367251 IGLV2-11P01706 119 aa6.81□□□□□ -1.32
SYNE1-205ENST00000367251 WFDC2Q14508 124 aa6.81□□□□□ -1.32
SYNE1-205ENST00000367251 C11orf71Q6IPW1 123 aa6.81□□□□□ -1.32
SYNE1-205ENST00000367251 MED13Q9UHV7 2174 aa6.81□□□□□ -1.32
SYNE1-205ENST00000367251 MIAQ16674 131 aa6.81□□□□□ -1.32
SYNE1-205ENST00000367251 NCOA6Q14686 2063 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-205ENST00000367251 NFE4Q86UQ8 179 aa6.81□□□□□ -1.32
SYNE1-205ENST00000367251 Q8N6K4 173 aa6.81□□□□□ -1.32
SYNE1-205ENST00000367251 IGKV2D-26A0A0A0MRZ7 120 aa6.8□□□□□ -1.32
SYNE1-205ENST00000367251 FAM236DA0A1B0GTK5 79 aa6.8□□□□□ -1.32
SYNE1-205ENST00000367251 FAM236CP0DP71 79 aa6.8□□□□□ -1.32
SYNE1-205ENST00000367251 UBE2D2P62837 147 aa6.8□□□□□ -1.32
SYNE1-205ENST00000367251 K7EQG2 157 aa6.8□□□□□ -1.32
SYNE1-205ENST00000367251 ATOX1O00244 68 aa6.8□□□□□ -1.32
SYNE1-205ENST00000367251 PRORYQ9H606 182 aa6.8□□□□□ -1.32
SYNE1-205ENST00000367251 COL5A1P20908 1838 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-205ENST00000367251 A0A0J9YXY3 114 aa6.79□□□□□ -1.32
SYNE1-205ENST00000367251 NUPR2A6NF83 97 aa6.79□□□□□ -1.32
SYNE1-205ENST00000367251 TRBV12-3P01733 135 aa6.79□□□□□ -1.32
SYNE1-205ENST00000367251 MAP6D1Q9H9H5 199 aa6.79□□□□□ -1.32
SYNE1-205ENST00000367251 TTTY13Q9BZ97 58 aa6.79□□□□□ -1.32
SYNE1-205ENST00000367251 RETNQ9HD89 108 aa6.79□□□□□ -1.32
SYNE1-205ENST00000367251 CRIP1P50238 77 aa6.79□□□□□ -1.32
SYNE1-205ENST00000367251 RNF185Q96GF1 192 aa6.79□□□□□ -1.32
SYNE1-205ENST00000367251 TRBV6-5A0A0K0K1A5 114 aa6.79□□□□□ -1.32
SYNE1-205ENST00000367251 Q6YL49 198 aa6.78□□□□□ -1.32
SYNE1-205ENST00000367251 SMIM20Q8N5G0 67 aa6.78□□□□□ -1.32
SYNE1-205ENST00000367251 PDE6GP18545 87 aa6.78□□□□□ -1.32
SYNE1-205ENST00000367251 TRAV10A0A0B4J240 114 aa6.77□□□□□ -1.33
SYNE1-205ENST00000367251 TMEM223A0PJW6 202 aa6.77□□□□□ -1.33
SYNE1-205ENST00000367251 C22orf34Q6ZV56 151 aa6.77□□□□□ -1.33
SYNE1-205ENST00000367251 ATG2AQ2TAZ0 1938 aa6.77□□□□□ -1.33
SYNE1-205ENST00000367251 CEP192Q8TEP8 1941 aa6.77□□□□□ -1.33
SYNE1-205ENST00000367251 FAM19A5Q7Z5A7 132 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-205ENST00000367251 PYGO1Q9Y3Y4 419 aa6.77□□□□□ -1.33
SYNE1-205ENST00000367251 TMEM61Q8N0U2 210 aa6.77□□□□□ -1.33
SYNE1-205ENST00000367251 ZFAND2AQ8N6M9 145 aa6.77□□□□□ -1.33
SYNE1-205ENST00000367251 UPK3BQ9BT76 320 aa6.77□□□□□ -1.33
SYNE1-205ENST00000367251 PTPRSQ13332 1948 aa6.77□□□□□ -1.33
SYNE1-205ENST00000367251 FREM1Q5H8C1 2179 aa6.77□□□□□ -1.33
SYNE1-205ENST00000367251 LINC01548A6NM66 108 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 C20orf173Q96LM9 149 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 SMIM9A6NGZ8 99 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 P0DMU3 169 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 FAM231AP0DMU4 169 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 FAM231CP0DMU5 169 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 FAM222AQ5U5X8 452 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 CNFNQ9BYD5 112 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 COX7BP24311 80 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 C3orf22Q8N5N4 141 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 PCDH15Q96QU1 1955 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 LECT2O14960 151 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 TP73-AS1Q9UF72 201 aa6.76□□□□□ -1.33
SYNE1-205ENST00000367251 TMEM256-PLSCR3K7ERE1 68 aa6.75□□□□□ -1.33
SYNE1-205ENST00000367251 TRBV27A0A0K0K1C4 114 aa6.75□□□□□ -1.33
SYNE1-205ENST00000367251 PRYO14603 147 aa6.75□□□□□ -1.33
SYNE1-205ENST00000367251 LY6G6DO95868 133 aa6.75□□□□□ -1.33
SYNE1-205ENST00000367251 TIMM17BO60830 172 aa6.75□□□□□ -1.33
SYNE1-205ENST00000367251 TCL1BO95988 128 aa6.75□□□□□ -1.33
SYNE1-205ENST00000367251 SS18L2Q9UHA2 77 aa6.75□□□□□ -1.33
SYNE1-205ENST00000367251 SERP1Q9Y6X1 66 aa6.75□□□□□ -1.33
SYNE1-205ENST00000367251 PIK3CD-AS1Q5SR53 167 aa6.75□□□□□ -1.33
SYNE1-205ENST00000367251 HRCT1Q6UXD1 115 aa6.75□□□□□ -1.33
SYNE1-205ENST00000367251 PSMB8P28062 276 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms