RNA–Protein interactions for RNA: ENST00000360642.7

CLCN3-202, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2 BASIC

Gene CLCN3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-202ENST00000360642 TCTEX1D4Q5JR98 221 aa5.32□□□□□ -1.56
CLCN3-202ENST00000360642 CHD6Q8TD26 2715 aa5.32□□□□□ -1.56
CLCN3-202ENST00000360642 CCDC168Q8NDH2 2452 aa5.32□□□□□ -1.56
CLCN3-202ENST00000360642 GAGE12JA6NER3 117 aa5.32□□□□□ -1.56
CLCN3-202ENST00000360642 C11orf86A6NJI1 115 aa5.32□□□□□ -1.56
CLCN3-202ENST00000360642 RBMY1A1P0DJD3 496 aaKnown RBP5.32□□□□□ -1.56
CLCN3-202ENST00000360642 RBMY1CP0DJD4 496 aa5.32□□□□□ -1.56
CLCN3-202ENST00000360642 RBMY1FQ15415 496 aaKnown RBP5.32□□□□□ -1.56
CLCN3-202ENST00000360642 C12orf74Q32Q52 190 aa5.32□□□□□ -1.56
CLCN3-202ENST00000360642 FAM74A4Q5TZK3 123 aa5.32□□□□□ -1.56
CLCN3-202ENST00000360642 HIST1H4GQ99525 98 aa5.32□□□□□ -1.56
CLCN3-202ENST00000360642 NF1P21359 2839 aa5.32□□□□□ -1.56
CLCN3-202ENST00000360642 IGLL5B9A064 214 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 NSUN5P1Q3KNT7 163 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 C18orf65Q6ZTR6 163 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 CITED1Q99966 193 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 NIPBLQ6KC79 2804 aaeCLIP5.31□□□□□ -1.56
CLCN3-202ENST00000360642 ZNF876PQ49A33 203 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 LRRC75A-AS1Q8N1F1 130 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 EDA2RQ9HAV5 297 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 IGLV9-49A0A0B4J1Y8 123 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 PRM2P04554 102 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 P0DMU3 169 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 FAM231AP0DMU4 169 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 FAM231CP0DMU5 169 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 RHOHQ15669 191 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 DEFB113Q30KQ7 82 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 TRPT1Q86TN4 253 aaKnown RBP5.31□□□□□ -1.56
CLCN3-202ENST00000360642 PRAC1Q96KF2 57 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 NOTCH3Q9UM47 2321 aa5.31□□□□□ -1.56
CLCN3-202ENST00000360642 WNK1Q9H4A3 2382 aa5.3□□□□□ -1.56
CLCN3-202ENST00000360642 TRAV2A0A0B4J234 112 aa5.3□□□□□ -1.56
CLCN3-202ENST00000360642 K7ERU9 68 aa5.3□□□□□ -1.56
CLCN3-202ENST00000360642 PLA2G2AP14555 144 aa5.3□□□□□ -1.56
CLCN3-202ENST00000360642 ZNF56Q15929 161 aa5.3□□□□□ -1.56
CLCN3-202ENST00000360642 DEFB136Q30KP8 78 aa5.3□□□□□ -1.56
CLCN3-202ENST00000360642 ZNRF2Q8NHG8 242 aa5.3□□□□□ -1.56
CLCN3-202ENST00000360642 PRRC2AP48634 2157 aaKnown RBP5.3□□□□□ -1.56
CLCN3-202ENST00000360642 UBR5O95071 2799 aaPredicted RBP5.3□□□□□ -1.56
CLCN3-202ENST00000360642 ZNF815PA8K554 130 aa5.3□□□□□ -1.56
CLCN3-202ENST00000360642 PLEKHB2Q96CS7 222 aa5.3□□□□□ -1.56
CLCN3-202ENST00000360642 DUX3Q96PT4 197 aa5.3□□□□□ -1.56
CLCN3-202ENST00000360642 KNCNA6PVL3 124 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 H3BMM0 161 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 EMP1P54849 157 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 KRTAP1-3Q8IUG1 177 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 KLHL30-AS1Q8NEE0 82 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 FAM218AQ96MZ4 157 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 RBMY1BA6NDE4 496 aaKnown RBP5.29□□□□□ -1.56
CLCN3-202ENST00000360642 RBMY1EA6NEQ0 496 aaKnown RBP5.29□□□□□ -1.56
CLCN3-202ENST00000360642 I3L3M4 83 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 RBMY1DP0C7P1 496 aaKnown RBP5.29□□□□□ -1.56
CLCN3-202ENST00000360642 NFE4Q86UQ8 179 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 C4orf3Q8WVX3 66 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 G3V4G9 280 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 DEFB131AP59861 70 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 C20orf203Q8NBC4 194 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 ZNF479Q96JC4 524 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 C2orf48Q96LS8 159 aa5.29□□□□□ -1.56
CLCN3-202ENST00000360642 HTN1P15515 57 aa5.28□□□□□ -1.56
CLCN3-202ENST00000360642 HERVK_113P61574 105 aa5.28□□□□□ -1.56
CLCN3-202ENST00000360642 RRN3P1Q2M238 152 aa5.28□□□□□ -1.56
CLCN3-202ENST00000360642 LINC01561Q8N1V8 128 aa5.28□□□□□ -1.56
CLCN3-202ENST00000360642 AMELXQ99217 191 aa5.28□□□□□ -1.56
CLCN3-202ENST00000360642 A0A0J9YY99 117 aa5.28□□□□□ -1.56
CLCN3-202ENST00000360642 UBE2D1P51668 147 aa5.28□□□□□ -1.56
CLCN3-202ENST00000360642 TSPEAR-AS2P59090 65 aa5.28□□□□□ -1.56
CLCN3-202ENST00000360642 TMEM61Q8N0U2 210 aa5.28□□□□□ -1.56
CLCN3-202ENST00000360642 PTH2Q96A98 100 aa5.28□□□□□ -1.56
CLCN3-202ENST00000360642 OPRPNQ99935 248 aaPredicted RBP5.28□□□□□ -1.56
CLCN3-202ENST00000360642 NTN5Q8WTR8 489 aaPredicted RBP5.27□□□□□ -1.57
CLCN3-202ENST00000360642 VPS25Q9BRG1 176 aa5.27□□□□□ -1.57
CLCN3-202ENST00000360642 LCE4AQ5TA78 99 aa5.27□□□□□ -1.57
CLCN3-202ENST00000360642 SCGB1D4Q6XE38 83 aa5.27□□□□□ -1.57
CLCN3-202ENST00000360642 DLX4Q92988 240 aaPredicted RBP5.27□□□□□ -1.57
CLCN3-202ENST00000360642 FAM104AQ969W3 186 aa5.27□□□□□ -1.57
CLCN3-202ENST00000360642 LINC00467Q9BRT7 94 aa5.27□□□□□ -1.57
CLCN3-202ENST00000360642 SPANXB1Q9NS25 103 aaPredicted RBP5.27□□□□□ -1.57
CLCN3-202ENST00000360642 ACANP16112 2415 aa5.27□□□□□ -1.57
CLCN3-202ENST00000360642 F8W1H4 67 aa5.27□□□□□ -1.57
CLCN3-202ENST00000360642 TMEM170BQ5T4T1 132 aa5.27□□□□□ -1.57
CLCN3-202ENST00000360642 IGLV4-3A0A075B6K6 122 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 TMEM223A0PJW6 202 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 M0R2P5 195 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 PRSS2P07478 247 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 XGP55808 180 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 DEFB114Q30KQ6 69 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 TMEM86BQ8N661 226 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 SLC25A29Q8N8R3 303 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 PYGO1Q9Y3Y4 419 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 IGLV5-45A0A087WSX0 123 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 A8MWV9 139 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 IGHV3-30P01768 117 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 IGHV3-30-5P0DP03 117 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 C11orf72Q8NBR9 251 aa5.26□□□□□ -1.57
CLCN3-202ENST00000360642 IGLV5-37A0A075B6J1 123 aa5.25□□□□□ -1.57
CLCN3-202ENST00000360642 J3QQQ9 107 aa5.25□□□□□ -1.57
CLCN3-202ENST00000360642 SRSF9Q13242 221 aaKnown RBP eCLIP5.25□□□□□ -1.57
CLCN3-202ENST00000360642 APCP25054 2843 aa5.25□□□□□ -1.57
CLCN3-202ENST00000360642 IGHV3-73A0A0B4J1V6 119 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms