RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 INO80EQ8NBZ0 244 aaPredicted RBP8.64□□□□□ -1.03
VPS29-201ENST00000360579 PRSS3P2Q8NHM4 247 aa8.64□□□□□ -1.03
VPS29-201ENST00000360579 GFRA4Q9GZZ7 299 aa8.64□□□□□ -1.03
VPS29-201ENST00000360579 LPAP08519 4548 aa8.64□□□□□ -1.03
VPS29-201ENST00000360579 MAP1LC3B2A6NCE7 125 aa8.63□□□□□ -1.03
VPS29-201ENST00000360579 M0QY20 66 aa8.63□□□□□ -1.03
VPS29-201ENST00000360579 SSTP61278 116 aa8.63□□□□□ -1.03
VPS29-201ENST00000360579 RPL7L1Q6DKI1 246 aaKnown RBP8.63□□□□□ -1.03
VPS29-201ENST00000360579 PGLYRP4Q96LB8 373 aa8.63□□□□□ -1.03
VPS29-201ENST00000360579 MAP1LC3BQ9GZQ8 125 aa8.63□□□□□ -1.03
VPS29-201ENST00000360579 GAGE12HA6NDE8 117 aa8.62□□□□□ -1.03
VPS29-201ENST00000360579 MGPP08493 103 aa8.62□□□□□ -1.03
VPS29-201ENST00000360579 Q6ZRP5 223 aa8.62□□□□□ -1.03
VPS29-201ENST00000360579 TMEM238LA0A1B0GVL6 79 aa8.61□□□□□ -1.03
VPS29-201ENST00000360579 SRSF9Q13242 221 aaKnown RBP eCLIP8.61□□□□□ -1.03
VPS29-201ENST00000360579 HIGD2BQ4VC39 106 aa8.61□□□□□ -1.03
VPS29-201ENST00000360579 BAGE2Q86Y30 109 aa8.61□□□□□ -1.03
VPS29-201ENST00000360579 MLST8Q9BVC4 326 aa8.61□□□□□ -1.03
VPS29-201ENST00000360579 GVQW2A0A096LPI5 108 aaPredicted RBP8.6□□□□□ -1.03
VPS29-201ENST00000360579 NKX2-5P52952 324 aaPredicted RBP8.6□□□□□ -1.03
VPS29-201ENST00000360579 SUMO4Q6EEV6 95 aa8.6□□□□□ -1.03
VPS29-201ENST00000360579 A0A096LNI7 61 aa8.59□□□□□ -1.03
VPS29-201ENST00000360579 AMTP48728 403 aa8.59□□□□□ -1.03
VPS29-201ENST00000360579 COTL1Q14019 142 aa8.59□□□□□ -1.03
VPS29-201ENST00000360579 RASL11AQ6T310 242 aa8.59□□□□□ -1.03
VPS29-201ENST00000360579 MED28Q9H204 178 aa8.59□□□□□ -1.03
VPS29-201ENST00000360579 MUC2Q02817 5179 aa8.59□□□□□ -1.03
VPS29-201ENST00000360579 FAM231BA6NCW3 169 aa8.58□□□□□ -1.04
VPS29-201ENST00000360579 PAGE4O60829 102 aa8.58□□□□□ -1.04
VPS29-201ENST00000360579 CHCHD10Q8WYQ3 142 aaPredicted RBP8.58□□□□□ -1.04
VPS29-201ENST00000360579 NIT2Q9NQR4 276 aa8.58□□□□□ -1.04
VPS29-201ENST00000360579 ALG5Q9Y673 324 aa8.58□□□□□ -1.04
VPS29-201ENST00000360579 IGKV3OR2-268A0A0C4DH90 116 aa8.57□□□□□ -1.04
VPS29-201ENST00000360579 PFDN1O60925 122 aa8.57□□□□□ -1.04
VPS29-201ENST00000360579 CACNG7P62955 275 aa8.57□□□□□ -1.04
VPS29-201ENST00000360579 TPPP3Q9BW30 176 aa8.57□□□□□ -1.04
VPS29-201ENST00000360579 FER1L6-AS1Q8NA97 138 aa8.56□□□□□ -1.04
VPS29-201ENST00000360579 FXYD6-FXYD2A0A087WZ82 144 aa8.55□□□□□ -1.04
VPS29-201ENST00000360579 GIPP09681 153 aaPredicted RBP8.55□□□□□ -1.04
VPS29-201ENST00000360579 TRGC1P0CF51 173 aa8.55□□□□□ -1.04
VPS29-201ENST00000360579 IGLC6P0CF74 106 aa8.55□□□□□ -1.04
VPS29-201ENST00000360579 RPS20P60866 119 aaKnown RBP8.55□□□□□ -1.04
VPS29-201ENST00000360579 Q5BKY6 102 aa8.55□□□□□ -1.04
VPS29-201ENST00000360579 AMMECR1LQ6DCA0 310 aa8.55□□□□□ -1.04
VPS29-201ENST00000360579 ZNF664Q8N3J9 261 aa8.54□□□□□ -1.04
VPS29-201ENST00000360579 CARD19Q96LW7 228 aa8.54□□□□□ -1.04
VPS29-201ENST00000360579 F2Z2F3 143 aa8.53□□□□□ -1.04
VPS29-201ENST00000360579 H7C423 109 aa8.53□□□□□ -1.04
VPS29-201ENST00000360579 FOXI1Q12951 378 aa8.53□□□□□ -1.04
VPS29-201ENST00000360579 TMUB2Q71RG4 321 aa8.53□□□□□ -1.04
VPS29-201ENST00000360579 SFT2D1Q8WV19 159 aa8.53□□□□□ -1.04
VPS29-201ENST00000360579 IGHV1-58A0A0C4DH39 117 aa8.52□□□□□ -1.05
VPS29-201ENST00000360579 XKRY2A2RUG3 117 aa8.52□□□□□ -1.05
VPS29-201ENST00000360579 RNASEKQ6P5S7 137 aaKnown RBP8.52□□□□□ -1.05
VPS29-201ENST00000360579 OR2D3Q8NGH3 330 aa8.52□□□□□ -1.05
VPS29-201ENST00000360579 PSORS1C2Q9UIG4 136 aa8.52□□□□□ -1.05
VPS29-201ENST00000360579 A0A0U1RQV1 116 aa8.51□□□□□ -1.05
VPS29-201ENST00000360579 NCR2O95944 276 aa8.51□□□□□ -1.05
VPS29-201ENST00000360579 RPL35P42766 123 aaKnown RBP8.51□□□□□ -1.05
VPS29-201ENST00000360579 MBD3L1Q8WWY6 194 aa8.51□□□□□ -1.05
VPS29-201ENST00000360579 TRAV26-2A0A0B4J265 109 aa8.5□□□□□ -1.05
VPS29-201ENST00000360579 ZNF561-AS1K7EIQ3 104 aa8.5□□□□□ -1.05
VPS29-201ENST00000360579 NTF3P20783 257 aa8.5□□□□□ -1.05
VPS29-201ENST00000360579 OR5A1Q8NGJ0 315 aa8.5□□□□□ -1.05
VPS29-201ENST00000360579 UMAD1C9J7I0 102 aa8.49□□□□□ -1.05
VPS29-201ENST00000360579 APCSP02743 223 aa8.49□□□□□ -1.05
VPS29-201ENST00000360579 FGF6P10767 208 aa8.49□□□□□ -1.05
VPS29-201ENST00000360579 ZNF25P17030 456 aaPredicted RBP8.49□□□□□ -1.05
VPS29-201ENST00000360579 XCL1P47992 114 aa8.49□□□□□ -1.05
VPS29-201ENST00000360579 PTTG1IPP53801 180 aa8.49□□□□□ -1.05
VPS29-201ENST00000360579 SYCNQ0VAF6 134 aa8.49□□□□□ -1.05
VPS29-201ENST00000360579 KCNRGQ8N5I3 272 aa8.49□□□□□ -1.05
VPS29-201ENST00000360579 CYTL1Q9NRR1 136 aa8.49□□□□□ -1.05
VPS29-201ENST00000360579 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.48□□□□□ -1.05
VPS29-201ENST00000360579 LOC107984640A0A0U1RRK4 108 aa8.48□□□□□ -1.05
VPS29-201ENST00000360579 A0A1B0GV50 99 aa8.48□□□□□ -1.05
VPS29-201ENST00000360579 IGKV2-29A2NJV5 120 aaPredicted RBP8.48□□□□□ -1.05
VPS29-201ENST00000360579 IFNA1P01562 189 aa8.48□□□□□ -1.05
VPS29-201ENST00000360579 MT-ND6P03923 174 aa8.48□□□□□ -1.05
VPS29-201ENST00000360579 LYZL1Q6UWQ5 148 aa8.48□□□□□ -1.05
VPS29-201ENST00000360579 FAM213BQ8TBF2 198 aa8.48□□□□□ -1.05
VPS29-201ENST00000360579 ISOC2Q96AB3 205 aa8.48□□□□□ -1.05
VPS29-201ENST00000360579 SMIM12Q96EX1 92 aa8.48□□□□□ -1.05
VPS29-201ENST00000360579 TMEM101Q96IK0 257 aa8.48□□□□□ -1.05
VPS29-201ENST00000360579 BTF3L4Q96K17 158 aa8.48□□□□□ -1.05
VPS29-201ENST00000360579 C19orf71A6NCJ1 209 aa8.47□□□□□ -1.05
VPS29-201ENST00000360579 CCL25O15444 150 aa8.47□□□□□ -1.05
VPS29-201ENST00000360579 GAGE2BQ13066 116 aa8.47□□□□□ -1.05
VPS29-201ENST00000360579 CENPWQ5EE01 88 aa8.47□□□□□ -1.05
VPS29-201ENST00000360579 Q6ZNX1 250 aa8.47□□□□□ -1.05
VPS29-201ENST00000360579 LINC00526Q96FQ7 95 aa8.47□□□□□ -1.05
VPS29-201ENST00000360579 LINC00959A0A1B0GUT2 108 aa8.46□□□□□ -1.06
VPS29-201ENST00000360579 ARPC5O15511 151 aa8.46□□□□□ -1.06
VPS29-201ENST00000360579 CAMPP49913 170 aa8.46□□□□□ -1.06
VPS29-201ENST00000360579 C9orf62Q8N4C0 152 aa8.46□□□□□ -1.06
VPS29-201ENST00000360579 GATD1Q8NB37 220 aa8.46□□□□□ -1.06
VPS29-201ENST00000360579 C11orf52Q96A22 123 aa8.46□□□□□ -1.06
VPS29-201ENST00000360579 SS18Q15532 418 aa8.45□□□□□ -1.06
VPS29-201ENST00000360579 TWIST1Q15672 202 aa8.45□□□□□ -1.06
VPS29-201ENST00000360579 C1orf137Q5JT78 98 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms