RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 PRADC1Q9BSG0 188 aa9.43□□□□□ -0.9
CLK3-201ENST00000345005 MUC4Q99102 2169 aa9.43□□□□□ -0.9
CLK3-201ENST00000345005 PRSS29PA6NIE9 313 aa9.42□□□□□ -0.9
CLK3-201ENST00000345005 ZNF815PA8K554 130 aa9.42□□□□□ -0.9
CLK3-201ENST00000345005 M0QXV9 152 aa9.42□□□□□ -0.9
CLK3-201ENST00000345005 PF4P02776 101 aa9.42□□□□□ -0.9
CLK3-201ENST00000345005 UBE2D1P51668 147 aa9.42□□□□□ -0.9
CLK3-201ENST00000345005 CDIP1Q9H305 208 aa9.42□□□□□ -0.9
CLK3-201ENST00000345005 NXPH4O95158 308 aa9.42□□□□□ -0.9
CLK3-201ENST00000345005 IGLV1-51P01701 117 aa9.42□□□□□ -0.9
CLK3-201ENST00000345005 CD7P09564 240 aa9.42□□□□□ -0.9
CLK3-201ENST00000345005 RNASE3P12724 160 aaKnown RBP9.42□□□□□ -0.9
CLK3-201ENST00000345005 MORN3Q6PF18 240 aaPredicted RBP9.42□□□□□ -0.9
CLK3-201ENST00000345005 IGHV1OR15-1A0A075B7D0 117 aa9.41□□□□□ -0.9
CLK3-201ENST00000345005 VCYO14598 125 aa9.41□□□□□ -0.9
CLK3-201ENST00000345005 ODF3L2Q3SX64 289 aa9.41□□□□□ -0.9
CLK3-201ENST00000345005 CFAP126Q5VTH2 177 aa9.41□□□□□ -0.9
CLK3-201ENST00000345005 PPDPFLQ8WWR9 84 aa9.41□□□□□ -0.9
CLK3-201ENST00000345005 PMVKQ15126 192 aa9.4□□□□□ -0.9
CLK3-201ENST00000345005 Q6ZUT4 128 aa9.4□□□□□ -0.9
CLK3-201ENST00000345005 SH2D6Q7Z4S9 175 aa9.4□□□□□ -0.9
CLK3-201ENST00000345005 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.4□□□□□ -0.9
CLK3-201ENST00000345005 TIMM17AQ99595 171 aa9.4□□□□□ -0.9
CLK3-201ENST00000345005 UBE2D3P61077 147 aa9.4□□□□□ -0.91
CLK3-201ENST00000345005 UBE2D2P62837 147 aa9.4□□□□□ -0.91
CLK3-201ENST00000345005 Q6Q795 121 aa9.4□□□□□ -0.91
CLK3-201ENST00000345005 LINC00482Q8N8I6 264 aa9.4□□□□□ -0.91
CLK3-201ENST00000345005 KIR2DL4Q99706 377 aa9.4□□□□□ -0.91
CLK3-201ENST00000345005 RBMY1BA6NDE4 496 aaKnown RBP9.39□□□□□ -0.91
CLK3-201ENST00000345005 RBMY1EA6NEQ0 496 aaKnown RBP9.39□□□□□ -0.91
CLK3-201ENST00000345005 C11orf86A6NJI1 115 aa9.39□□□□□ -0.91
CLK3-201ENST00000345005 RBMY1DP0C7P1 496 aaKnown RBP9.39□□□□□ -0.91
CLK3-201ENST00000345005 ZFAND6Q6FIF0 208 aa9.39□□□□□ -0.91
CLK3-201ENST00000345005 STHQ8IWL8 128 aa9.39□□□□□ -0.91
CLK3-201ENST00000345005 C14orf178Q8N769 122 aaPredicted RBP9.39□□□□□ -0.91
CLK3-201ENST00000345005 SYT8Q8NBV8 401 aa9.39□□□□□ -0.91
CLK3-201ENST00000345005 TRGV11A0A075B6L2 103 aa9.38□□□□□ -0.91
CLK3-201ENST00000345005 IGHV3-16A0A0C4DH30 117 aa9.38□□□□□ -0.91
CLK3-201ENST00000345005 MGPP08493 103 aa9.38□□□□□ -0.91
CLK3-201ENST00000345005 BEAN1Q3B7T3 259 aa9.38□□□□□ -0.91
CLK3-201ENST00000345005 SBSPONQ8IVN8 264 aa9.38□□□□□ -0.91
CLK3-201ENST00000345005 Q8N1Y9 231 aa9.38□□□□□ -0.91
CLK3-201ENST00000345005 ANAPC13Q9BS18 74 aa9.38□□□□□ -0.91
CLK3-201ENST00000345005 KRTAP21-3Q3LHN1 58 aa9.38□□□□□ -0.91
CLK3-201ENST00000345005 C9orf85Q96MD7 179 aa9.38□□□□□ -0.91
CLK3-201ENST00000345005 JMJD1CQ15652 2540 aa9.37□□□□□ -0.91
CLK3-201ENST00000345005 SPRY2O43597 315 aa9.37□□□□□ -0.91
CLK3-201ENST00000345005 PSMB2P49721 201 aa9.37□□□□□ -0.91
CLK3-201ENST00000345005 TEN1Q86WV5 123 aa9.37□□□□□ -0.91
CLK3-201ENST00000345005 CITED1Q99966 193 aa9.37□□□□□ -0.91
CLK3-201ENST00000345005 SPANXDQ9BXN6 97 aa9.37□□□□□ -0.91
CLK3-201ENST00000345005 LOC107984156A0A0G2JMH3 177 aa9.36□□□□□ -0.91
CLK3-201ENST00000345005 TRBV6-5A0A0K0K1A5 114 aa9.36□□□□□ -0.91
CLK3-201ENST00000345005 IGIPA6NJ69 53 aa9.36□□□□□ -0.91
CLK3-201ENST00000345005 POLR2KP53803 58 aaKnown RBP9.36□□□□□ -0.91
CLK3-201ENST00000345005 TRPT1Q86TN4 253 aaKnown RBP9.36□□□□□ -0.91
CLK3-201ENST00000345005 ARL17AQ8IVW1 177 aa9.36□□□□□ -0.91
CLK3-201ENST00000345005 SLC25A29Q8N8R3 303 aa9.36□□□□□ -0.91
CLK3-201ENST00000345005 RNF183Q96D59 192 aa9.36□□□□□ -0.91
CLK3-201ENST00000345005 RPL39LQ96EH5 51 aaKnown RBP9.36□□□□□ -0.91
CLK3-201ENST00000345005 MDFICQ9P1T7 246 aa9.36□□□□□ -0.91
CLK3-201ENST00000345005 A0A0J9YY99 117 aa9.35□□□□□ -0.91
CLK3-201ENST00000345005 A8MWV9 139 aa9.35□□□□□ -0.91
CLK3-201ENST00000345005 INSP01308 110 aa9.35□□□□□ -0.91
CLK3-201ENST00000345005 RBMY1A1P0DJD3 496 aaKnown RBP9.35□□□□□ -0.91
CLK3-201ENST00000345005 RBMY1CP0DJD4 496 aa9.35□□□□□ -0.91
CLK3-201ENST00000345005 INSL3P51460 131 aa9.35□□□□□ -0.91
CLK3-201ENST00000345005 RBMY1FQ15415 496 aaKnown RBP9.35□□□□□ -0.91
CLK3-201ENST00000345005 RHOHQ15669 191 aa9.35□□□□□ -0.91
CLK3-201ENST00000345005 LINC00467Q9BRT7 94 aa9.35□□□□□ -0.91
CLK3-201ENST00000345005 FBN1P35555 2871 aaKnown RBP9.35□□□□□ -0.91
CLK3-201ENST00000345005 ZFP2Q6ZN57 461 aa9.35□□□□□ -0.91
CLK3-201ENST00000345005 PRIMA1Q86XR5 153 aa9.35□□□□□ -0.91
CLK3-201ENST00000345005 KIF25-AS1Q9Y6Z4 181 aa9.35□□□□□ -0.91
CLK3-201ENST00000345005 CRYGDP07320 174 aa9.34□□□□□ -0.91
CLK3-201ENST00000345005 C10orf126Q8N4M7 172 aa9.34□□□□□ -0.91
CLK3-201ENST00000345005 LINC01600Q96MT4 127 aa9.34□□□□□ -0.91
CLK3-201ENST00000345005 LINC01587Q99440 93 aa9.34□□□□□ -0.91
CLK3-201ENST00000345005 PRO1854Q9UHT4 67 aa9.34□□□□□ -0.91
CLK3-201ENST00000345005 TP53TG1Q9Y2A0 90 aa9.34□□□□□ -0.91
CLK3-201ENST00000345005 IGLV4-69A0A075B6H9 119 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 TRBV27A0A0K0K1C4 114 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 RHODO00212 210 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 LGALS3P17931 250 aaKnown RBP9.33□□□□□ -0.92
CLK3-201ENST00000345005 ZNF876PQ49A33 203 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 C9orf66Q5T8R8 295 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 NFE4Q86UQ8 179 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 C19orf73Q9NVV2 129 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 ATRQ13535 2644 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 GAGE12JA6NER3 117 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 GAGE7O76087 117 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 IGHV3-30P01768 117 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 MT-ATP8P03928 68 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 GAGE12FP0CL80 117 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 GAGE12GP0CL81 117 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 GAGE12IP0CL82 117 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 IGHV3-30-5P0DP03 117 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 GAGE4Q13068 117 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 XCL2Q9UBD3 114 aa9.33□□□□□ -0.92
CLK3-201ENST00000345005 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms