RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 TRAV13-1A0A0B4J241 112 aa6.11□□□□□ -1.43
ATG4A-201ENST00000343524 TRBV6-5A0A0K0K1A5 114 aa6.11□□□□□ -1.43
ATG4A-201ENST00000343524 hADV29S1A0JD25 119 aa6.11□□□□□ -1.43
ATG4A-201ENST00000343524 TMEM178BH3BS89 294 aa6.11□□□□□ -1.43
ATG4A-201ENST00000343524 POLR2KP53803 58 aaKnown RBP6.11□□□□□ -1.43
ATG4A-201ENST00000343524 NPBQ8NG41 125 aa6.11□□□□□ -1.43
ATG4A-201ENST00000343524 DOCK7Q96N67 2140 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 TRBV27A0A0K0K1C4 114 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 F8WDY8 70 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 I3L3M4 83 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 COX7A2LO14548 114 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 IGFL4Q6B9Z1 124 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 C9orf139Q6ZV77 190 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 GPHB5Q86YW7 130 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 SMCR5Q8TEV8 140 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 CLEC2BQ92478 149 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 LINC00477Q96M19 166 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 FANCD2OSQ96PS1 177 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 PRO0628Q9UI54 55 aa6.1□□□□□ -1.43
ATG4A-201ENST00000343524 BUB3O43684 328 aa6.09□□□□□ -1.43
ATG4A-201ENST00000343524 NDUFC2O95298 119 aa6.09□□□□□ -1.43
ATG4A-201ENST00000343524 ZNF415Q09FC8 603 aa6.09□□□□□ -1.43
ATG4A-201ENST00000343524 LITAFQ99732 161 aa6.09□□□□□ -1.43
ATG4A-201ENST00000343524 OVOL2Q9BRP0 275 aa6.09□□□□□ -1.43
ATG4A-201ENST00000343524 TRBV7-1A0A0A6YYK4 115 aa6.09□□□□□ -1.44
ATG4A-201ENST00000343524 PRSS2P07478 247 aa6.09□□□□□ -1.44
ATG4A-201ENST00000343524 CTSGP08311 255 aa6.09□□□□□ -1.44
ATG4A-201ENST00000343524 Q6JHZ5 121 aa6.09□□□□□ -1.44
ATG4A-201ENST00000343524 CCDC168Q8NDH2 2452 aa6.08□□□□□ -1.44
ATG4A-201ENST00000343524 TRAV41A0A0B4J266 112 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 KRTAP4-8A0A0G2JLE6 195 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 MBD3L4A6NDZ8 208 aaPredicted RBP6.07□□□□□ -1.44
ATG4A-201ENST00000343524 MBD3L3A6NE82 208 aaPredicted RBP6.07□□□□□ -1.44
ATG4A-201ENST00000343524 MBD3L5A6NJ08 208 aaPredicted RBP6.07□□□□□ -1.44
ATG4A-201ENST00000343524 IGHV3-30-3P0DP02 117 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 RPL39P62891 51 aaKnown RBP6.07□□□□□ -1.44
ATG4A-201ENST00000343524 Q5XG85 94 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 MBD3L2Q8NHZ7 208 aaPredicted RBP6.07□□□□□ -1.44
ATG4A-201ENST00000343524 NBEAL1Q6ZS30 2694 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 IGHV1-58A0A0C4DH39 117 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 DNAL4O96015 105 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 RNASE4P34096 147 aaKnown RBP6.07□□□□□ -1.44
ATG4A-201ENST00000343524 SYNJ2BPP57105 145 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 DAZ2Q13117 558 aaKnown RBP6.07□□□□□ -1.44
ATG4A-201ENST00000343524 CIRBPQ14011 172 aaKnown RBP6.07□□□□□ -1.44
ATG4A-201ENST00000343524 HRCT1Q6UXD1 115 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 DAZ4Q86SG3 579 aaKnown RBP6.07□□□□□ -1.44
ATG4A-201ENST00000343524 EEF1AKMT3Q96AZ1 226 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 JPT2Q9H910 190 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 DAZ1Q9NQZ3 744 aaKnown RBP6.07□□□□□ -1.44
ATG4A-201ENST00000343524 DAZ3Q9NR90 486 aaKnown RBP6.07□□□□□ -1.44
ATG4A-201ENST00000343524 NDUFA12Q9UI09 145 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 S4R3C0 116 aa6.07□□□□□ -1.44
ATG4A-201ENST00000343524 INTS1Q8N201 2190 aaKnown RBP6.06□□□□□ -1.44
ATG4A-201ENST00000343524 CSMD2Q7Z408 3487 aa6.06□□□□□ -1.44
ATG4A-201ENST00000343524 DNAJC13O75165 2243 aa6.06□□□□□ -1.44
ATG4A-201ENST00000343524 LY6LH3BQJ8 138 aa6.06□□□□□ -1.44
ATG4A-201ENST00000343524 GHRHP01286 108 aa6.06□□□□□ -1.44
ATG4A-201ENST00000343524 NPC2P61916 151 aa6.06□□□□□ -1.44
ATG4A-201ENST00000343524 SUMO4Q6EEV6 95 aa6.06□□□□□ -1.44
ATG4A-201ENST00000343524 LYPD2Q6UXB3 125 aa6.06□□□□□ -1.44
ATG4A-201ENST00000343524 UPK3BQ9BT76 320 aa6.06□□□□□ -1.44
ATG4A-201ENST00000343524 KIF25-AS1Q9Y6Z4 181 aa6.06□□□□□ -1.44
ATG4A-201ENST00000343524 FBN1P35555 2871 aaKnown RBP6.06□□□□□ -1.44
ATG4A-201ENST00000343524 RP1L1Q8IWN7 2480 aaPredicted RBP6.06□□□□□ -1.44
ATG4A-201ENST00000343524 APRG1Q8IVJ8 170 aa6.05□□□□□ -1.44
ATG4A-201ENST00000343524 C16orf92Q96LL3 132 aa6.05□□□□□ -1.44
ATG4A-201ENST00000343524 PYGO1Q9Y3Y4 419 aa6.05□□□□□ -1.44
ATG4A-201ENST00000343524 MRPS36P82909 103 aaKnown RBP6.05□□□□□ -1.44
ATG4A-201ENST00000343524 C4orf26Q17RF5 130 aa6.05□□□□□ -1.44
ATG4A-201ENST00000343524 S100A7L2Q5SY68 101 aa6.05□□□□□ -1.44
ATG4A-201ENST00000343524 ZFAND2AQ8N6M9 145 aa6.05□□□□□ -1.44
ATG4A-201ENST00000343524 LY6G5BQ8NDX9 201 aa6.05□□□□□ -1.44
ATG4A-201ENST00000343524 CCL17Q92583 94 aa6.05□□□□□ -1.44
ATG4A-201ENST00000343524 DPM3Q9P2X0 92 aa6.05□□□□□ -1.44
ATG4A-201ENST00000343524 FN1P02751 2386 aaKnown RBP6.04□□□□□ -1.44
ATG4A-201ENST00000343524 IGHV3-64A0A075B6Q5 118 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 SPRY2O43597 315 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 IGLV1-40P01703 118 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 COX7A1P24310 79 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 PSMB8P28062 276 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 TIRAPP58753 221 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 KLK9Q2XQG4 91 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 PRR9Q5T870 116 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 ATP5EP2Q5VTU8 51 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 C20orf203Q8NBC4 194 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 FAM110DQ8TAY7 271 aaPredicted RBP6.04□□□□□ -1.44
ATG4A-201ENST00000343524 DSCR8Q96T75 97 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 KLK9Q9UKQ9 250 aa6.04□□□□□ -1.44
ATG4A-201ENST00000343524 IGLV4-3A0A075B6K6 122 aa6.03□□□□□ -1.44
ATG4A-201ENST00000343524 A0A0J9YXV3 536 aa6.03□□□□□ -1.44
ATG4A-201ENST00000343524 F5H697 171 aa6.03□□□□□ -1.44
ATG4A-201ENST00000343524 BAALC-AS2P0C853 105 aa6.03□□□□□ -1.44
ATG4A-201ENST00000343524 RNASE3P12724 160 aaKnown RBP6.03□□□□□ -1.44
ATG4A-201ENST00000343524 LINC00315P59091 139 aa6.03□□□□□ -1.44
ATG4A-201ENST00000343524 ITLN2Q8WWU7 325 aaPredicted RBP6.03□□□□□ -1.44
ATG4A-201ENST00000343524 TINCRA0A1B0GVN0 87 aa6.03□□□□□ -1.44
ATG4A-201ENST00000343524 M0R1W7 72 aa6.03□□□□□ -1.44
ATG4A-201ENST00000343524 PAX4O43316 350 aa6.03□□□□□ -1.44
ATG4A-201ENST00000343524 IGHV3-23P01764 117 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms