RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ATXN8Q156A1 80 aa8.95□□□□□ -0.98
USP1-201ENST00000339950 Q6ZUT4 128 aa8.95□□□□□ -0.98
USP1-201ENST00000339950 PIFOQ8TCI5 191 aa8.95□□□□□ -0.98
USP1-201ENST00000339950 TEN1Q86WV5 123 aa8.94□□□□□ -0.98
USP1-201ENST00000339950 Q96MF0 132 aa8.94□□□□□ -0.98
USP1-201ENST00000339950 IGHG2P01859 326 aa8.94□□□□□ -0.98
USP1-201ENST00000339950 C19orf54Q5BKX5 351 aa8.94□□□□□ -0.98
USP1-201ENST00000339950 C9orf153Q5TBE3 101 aa8.94□□□□□ -0.98
USP1-201ENST00000339950 Q9UF83 564 aa8.94□□□□□ -0.98
USP1-201ENST00000339950 UBR5O95071 2799 aaPredicted RBP8.94□□□□□ -0.98
USP1-201ENST00000339950 TRBV7-9A0A0J9YWB2 115 aa8.94□□□□□ -0.98
USP1-201ENST00000339950 H3BMM0 161 aa8.94□□□□□ -0.98
USP1-201ENST00000339950 UBE2WQ96B02 151 aa8.94□□□□□ -0.98
USP1-201ENST00000339950 F8P00451 2351 aa8.94□□□□□ -0.98
USP1-201ENST00000339950 KRTAP10-9P60411 292 aa8.93□□□□□ -0.98
USP1-201ENST00000339950 UFSP1Q6NVU6 142 aa8.93□□□□□ -0.98
USP1-201ENST00000339950 ZNRF2Q8NHG8 242 aa8.93□□□□□ -0.98
USP1-201ENST00000339950 E9PLD3 99 aa8.93□□□□□ -0.98
USP1-201ENST00000339950 HIST1H4AP62805 103 aaKnown RBP8.93□□□□□ -0.98
USP1-201ENST00000339950 GAGE2AQ6NT46 116 aa8.93□□□□□ -0.98
USP1-201ENST00000339950 STHQ8IWL8 128 aa8.93□□□□□ -0.98
USP1-201ENST00000339950 TMEM61Q8N0U2 210 aa8.93□□□□□ -0.98
USP1-201ENST00000339950 GPHB5Q86YW7 130 aa8.92□□□□□ -0.98
USP1-201ENST00000339950 TCL1BO95988 128 aa8.92□□□□□ -0.98
USP1-201ENST00000339950 HTN3P15516 51 aa8.92□□□□□ -0.98
USP1-201ENST00000339950 XGP55808 180 aa8.92□□□□□ -0.98
USP1-201ENST00000339950 TIMM21Q9BVV7 248 aa8.92□□□□□ -0.98
USP1-201ENST00000339950 DEFB130BP0DP73 79 aa8.92□□□□□ -0.98
USP1-201ENST00000339950 DEFB130AP0DP74 79 aa8.92□□□□□ -0.98
USP1-201ENST00000339950 ESM1Q9NQ30 184 aa8.92□□□□□ -0.98
USP1-201ENST00000339950 LINC01356Q8N9X3 169 aa8.91□□□□□ -0.98
USP1-201ENST00000339950 A6NDX4 124 aa8.91□□□□□ -0.98
USP1-201ENST00000339950 CFC1BP0CG36 223 aa8.91□□□□□ -0.98
USP1-201ENST00000339950 CFC1P0CG37 223 aa8.91□□□□□ -0.98
USP1-201ENST00000339950 CLPSL2Q6UWE3 100 aa8.91□□□□□ -0.98
USP1-201ENST00000339950 CARD19Q96LW7 228 aa8.91□□□□□ -0.98
USP1-201ENST00000339950 YAE1D1Q9NRH1 226 aa8.91□□□□□ -0.98
USP1-201ENST00000339950 Q6ZSV7 163 aa8.9□□□□□ -0.98
USP1-201ENST00000339950 TAL2Q16559 108 aa8.9□□□□□ -0.98
USP1-201ENST00000339950 TOMM6Q96B49 74 aa8.9□□□□□ -0.98
USP1-201ENST00000339950 HIGD1BQ9P298 99 aa8.9□□□□□ -0.98
USP1-201ENST00000339950 TEX49A0A1B0GTD5 131 aa8.9□□□□□ -0.99
USP1-201ENST00000339950 MUSTN1Q8IVN3 82 aa8.9□□□□□ -0.99
USP1-201ENST00000339950 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.89□□□□□ -0.99
USP1-201ENST00000339950 UBE2L6O14933 153 aa8.89□□□□□ -0.99
USP1-201ENST00000339950 NEXN-AS1Q8NBZ9 246 aa8.89□□□□□ -0.99
USP1-201ENST00000339950 WFDC10AQ9H1F0 79 aa8.89□□□□□ -0.99
USP1-201ENST00000339950 NDUFA12Q9UI09 145 aa8.88□□□□□ -0.99
USP1-201ENST00000339950 U3KQE9 123 aa8.88□□□□□ -0.99
USP1-201ENST00000339950 NIPBLQ6KC79 2804 aaeCLIP8.88□□□□□ -0.991e-6■■■■□ 23
USP1-201ENST00000339950 I3L3M4 83 aa8.88□□□□□ -0.99
USP1-201ENST00000339950 GATA3P23771 443 aa8.88□□□□□ -0.99
USP1-201ENST00000339950 CLEC2BQ92478 149 aa8.88□□□□□ -0.99
USP1-201ENST00000339950 MXRA5Q9NR99 2828 aa8.88□□□□□ -0.99
USP1-201ENST00000339950 ITPR2Q14571 2701 aa8.88□□□□□ -0.99
USP1-201ENST00000339950 A0A0J9YX75 114 aa8.88□□□□□ -0.99
USP1-201ENST00000339950 NDUFA7O95182 113 aa8.88□□□□□ -0.99
USP1-201ENST00000339950 TM2D2Q9BX73 214 aa8.88□□□□□ -0.99
USP1-201ENST00000339950 IGLV2-18A0A075B6J9 118 aa8.87□□□□□ -0.99
USP1-201ENST00000339950 TSPEAR-AS2P59090 65 aa8.87□□□□□ -0.99
USP1-201ENST00000339950 CNFNQ9BYD5 112 aa8.87□□□□□ -0.99
USP1-201ENST00000339950 TRGV11A0A075B6L2 103 aa8.87□□□□□ -0.99
USP1-201ENST00000339950 MRPL53Q96EL3 112 aaKnown RBP8.87□□□□□ -0.99
USP1-201ENST00000339950 CHCHD5Q9BSY4 110 aa8.86□□□□□ -0.99
USP1-201ENST00000339950 FAM236AA0A1B0GUQ0 79 aa8.86□□□□□ -0.99
USP1-201ENST00000339950 FAM236BA0A1B0GV22 79 aa8.86□□□□□ -0.99
USP1-201ENST00000339950 PRIMA1Q86XR5 153 aa8.86□□□□□ -0.99
USP1-201ENST00000339950 TMEM101Q96IK0 257 aa8.86□□□□□ -0.99
USP1-201ENST00000339950 DEFB4AO15263 64 aa8.86□□□□□ -0.99
USP1-201ENST00000339950 NOP10Q9NPE3 64 aaKnown RBP8.86□□□□□ -0.99
USP1-201ENST00000339950 TRGV4A0A0C4DH28 118 aa8.85□□□□□ -0.99
USP1-201ENST00000339950 PLA2G2AP14555 144 aa8.85□□□□□ -0.99
USP1-201ENST00000339950 CRIP2P52943 208 aaPredicted RBP8.85□□□□□ -0.99
USP1-201ENST00000339950 NDUFA11Q86Y39 141 aa8.85□□□□□ -0.99
USP1-201ENST00000339950 TRAV4A0A0B4J268 109 aa8.85□□□□□ -0.99
USP1-201ENST00000339950 PFN2P35080 140 aa8.85□□□□□ -0.99
USP1-201ENST00000339950 VPREB3Q9UKI3 123 aa8.85□□□□□ -0.99
USP1-201ENST00000339950 LINC01620Q4KN68 170 aa8.84□□□□□ -0.99
USP1-201ENST00000339950 ZMAT4Q9H898 229 aa8.84□□□□□ -0.99
USP1-201ENST00000339950 NBEAL1Q6ZS30 2694 aa8.84□□□□□ -0.99
USP1-201ENST00000339950 LINC00158P58513 81 aa8.84□□□□□ -0.99
USP1-201ENST00000339950 ZNF575Q86XF7 245 aa8.84□□□□□ -0.99
USP1-201ENST00000339950 DCANP1Q8TF63 244 aa8.84□□□□□ -0.99
USP1-201ENST00000339950 CCDC179H3BU77 68 aa8.84□□□□□ -0.99
USP1-201ENST00000339950 LENEPQ9Y5L5 61 aa8.84□□□□□ -0.99
USP1-201ENST00000339950 ZNF415Q09FC8 603 aa8.83□□□□□ -1
USP1-201ENST00000339950 MGAM2Q2M2H8 2515 aa8.83□□□□□ -1
USP1-201ENST00000339950 PEMTQ9UBM1 199 aa8.83□□□□□ -1
USP1-201ENST00000339950 BSNQ9UPA5 3926 aa8.83□□□□□ -1
USP1-201ENST00000339950 TINCRA0A1B0GVN0 87 aa8.83□□□□□ -1
USP1-201ENST00000339950 TRAV12-1A0A0B4J245 112 aa8.83□□□□□ -1
USP1-201ENST00000339950 A0A0J9YY99 117 aa8.83□□□□□ -1
USP1-201ENST00000339950 TMEM141Q96I45 108 aa8.83□□□□□ -1
USP1-201ENST00000339950 LINC01619G3V211 115 aa8.82□□□□□ -1
USP1-201ENST00000339950 NDUFV3P56181 108 aaKnown RBP8.82□□□□□ -1
USP1-201ENST00000339950 M0QY20 66 aa8.82□□□□□ -1
USP1-201ENST00000339950 PAX4O43316 350 aa8.82□□□□□ -1
USP1-201ENST00000339950 COX8CQ7Z4L0 72 aa8.82□□□□□ -1
USP1-201ENST00000339950 SETXQ7Z333 2677 aaKnown RBP8.82□□□□□ -1
USP1-201ENST00000339950 TRBV7-3A0A075B6L6 115 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms