RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 C11orf44Q8N8P7 122 aa7.92□□□□□ -1.14
RTN3-201ENST00000338850 SLC25A29Q8N8R3 303 aa7.92□□□□□ -1.14
RTN3-201ENST00000338850 C20orf203Q8NBC4 194 aa7.92□□□□□ -1.14
RTN3-201ENST00000338850 DLX4Q92988 240 aaPredicted RBP7.92□□□□□ -1.14
RTN3-201ENST00000338850 ZNF702PQ9H963 129 aa7.92□□□□□ -1.14
RTN3-201ENST00000338850 TRBV20-1A0A075B6N2 111 aa7.91□□□□□ -1.14
RTN3-201ENST00000338850 LEPROTO15243 131 aa7.91□□□□□ -1.14
RTN3-201ENST00000338850 Q8N1Y9 231 aa7.91□□□□□ -1.14
RTN3-201ENST00000338850 PLEKHB2Q96CS7 222 aa7.91□□□□□ -1.14
RTN3-201ENST00000338850 AMELXQ99217 191 aa7.91□□□□□ -1.14
RTN3-201ENST00000338850 NAA38Q9BRA0 125 aaKnown RBP7.91□□□□□ -1.14
RTN3-201ENST00000338850 A8MWV9 139 aa7.9□□□□□ -1.14
RTN3-201ENST00000338850 H3BMG7 143 aa7.9□□□□□ -1.14
RTN3-201ENST00000338850 RHODO00212 210 aa7.9□□□□□ -1.14
RTN3-201ENST00000338850 ZNF688P0C7X2 276 aa7.9□□□□□ -1.14
RTN3-201ENST00000338850 BEAN1Q3B7T3 259 aa7.9□□□□□ -1.14
RTN3-201ENST00000338850 GAGE13Q4V321 117 aa7.9□□□□□ -1.14
RTN3-201ENST00000338850 KPRPQ5T749 579 aaPredicted RBP7.9□□□□□ -1.14
RTN3-201ENST00000338850 SCGB1D4Q6XE38 83 aa7.9□□□□□ -1.14
RTN3-201ENST00000338850 LINC01600Q96MT4 127 aa7.9□□□□□ -1.14
RTN3-201ENST00000338850 SPATA25Q9BR10 227 aa7.9□□□□□ -1.14
RTN3-201ENST00000338850 NOTCH3Q9UM47 2321 aa7.9□□□□□ -1.15
RTN3-201ENST00000338850 TEX48A0A1B0GUV7 120 aa7.89□□□□□ -1.15
RTN3-201ENST00000338850 TMEM223A0PJW6 202 aa7.89□□□□□ -1.15
RTN3-201ENST00000338850 F5H697 171 aa7.89□□□□□ -1.15
RTN3-201ENST00000338850 IGHV3-30P01768 117 aa7.89□□□□□ -1.15
RTN3-201ENST00000338850 IGHV3-30-5P0DP03 117 aa7.89□□□□□ -1.15
RTN3-201ENST00000338850 HOXD3P31249 432 aaPredicted RBP7.89□□□□□ -1.15
RTN3-201ENST00000338850 ZNF56Q15929 161 aa7.89□□□□□ -1.15
RTN3-201ENST00000338850 SBSPONQ8IVN8 264 aa7.89□□□□□ -1.15
RTN3-201ENST00000338850 DNAJC30Q96LL9 226 aa7.89□□□□□ -1.15
RTN3-201ENST00000338850 VCX2Q9H322 139 aa7.89□□□□□ -1.15
RTN3-201ENST00000338850 A0A0B4J2C4 111 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 J3QQQ9 107 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 CD28P10747 220 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 SRSF9Q13242 221 aaKnown RBP eCLIP7.88□□□□□ -1.15
RTN3-201ENST00000338850 TMEM95Q3KNT9 176 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 CFAP126Q5VTH2 177 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 NDUFA11Q86Y39 141 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 C10orf126Q8N4M7 172 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 ZNRF2Q8NHG8 242 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 RNF183Q96D59 192 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 SPANXA1Q9NS26 97 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 PGPEP1Q9NXJ5 209 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 PEMTQ9UBM1 199 aa7.88□□□□□ -1.15
RTN3-201ENST00000338850 IGKV3-7A0A075B6H7 116 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 A0A087WWL8 130 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 ADARB2-AS1A8MUL3 147 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 TSPAN13O95857 204 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 P0DMU3 169 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 FAM231AP0DMU4 169 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 FAM231CP0DMU5 169 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 LGALS3P17931 250 aaKnown RBP7.87□□□□□ -1.15
RTN3-201ENST00000338850 EDN2P20800 178 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 RPL39P62891 51 aaKnown RBP7.87□□□□□ -1.15
RTN3-201ENST00000338850 MRPS36P82909 103 aaKnown RBP7.87□□□□□ -1.15
RTN3-201ENST00000338850 ZNF415Q09FC8 603 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 C21orf62-AS1Q17RA5 79 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 CD300EQ496F6 205 aaPredicted RBP7.87□□□□□ -1.15
RTN3-201ENST00000338850 SPXQ9BT56 116 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 JPT2Q9H910 190 aa7.87□□□□□ -1.15
RTN3-201ENST00000338850 MRPL16Q9NX20 251 aaKnown RBP7.87□□□□□ -1.15
RTN3-201ENST00000338850 IGLV4-3A0A075B6K6 122 aa7.86□□□□□ -1.15
RTN3-201ENST00000338850 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.86□□□□□ -1.15
RTN3-201ENST00000338850 TRAV25A0A0B4J276 109 aa7.86□□□□□ -1.15
RTN3-201ENST00000338850 TMEM238C9JI98 176 aa7.86□□□□□ -1.15
RTN3-201ENST00000338850 M0R2P5 195 aa7.86□□□□□ -1.15
RTN3-201ENST00000338850 SPRY2O43597 315 aa7.86□□□□□ -1.15
RTN3-201ENST00000338850 PRB2P02812 416 aaPredicted RBP7.86□□□□□ -1.15
RTN3-201ENST00000338850 ZNF22P17026 224 aaPredicted RBP7.86□□□□□ -1.15
RTN3-201ENST00000338850 SYNJ2BPP57105 145 aa7.86□□□□□ -1.15
RTN3-201ENST00000338850 SPINK13Q1W4C9 94 aa7.86□□□□□ -1.15
RTN3-201ENST00000338850 C4orf3Q8WVX3 66 aa7.86□□□□□ -1.15
RTN3-201ENST00000338850 CITED2Q99967 270 aaPredicted RBP7.86□□□□□ -1.15
RTN3-201ENST00000338850 C1QTNF4Q9BXJ3 329 aa7.86□□□□□ -1.15
RTN3-201ENST00000338850 NACAE9PAV3 2078 aa7.85□□□□□ -1.15
RTN3-201ENST00000338850 H3BMM0 161 aa7.85□□□□□ -1.15
RTN3-201ENST00000338850 TSPEAR-AS2P59090 65 aa7.85□□□□□ -1.15
RTN3-201ENST00000338850 RPL24P83731 157 aaKnown RBP7.85□□□□□ -1.15
RTN3-201ENST00000338850 OXLD1Q5BKU9 147 aa7.85□□□□□ -1.15
RTN3-201ENST00000338850 TCTEX1D4Q5JR98 221 aa7.85□□□□□ -1.15
RTN3-201ENST00000338850 TMEM170BQ5T4T1 132 aa7.85□□□□□ -1.15
RTN3-201ENST00000338850 TIMM21Q9BVV7 248 aa7.85□□□□□ -1.15
RTN3-201ENST00000338850 TIMM17BO60830 172 aa7.84□□□□□ -1.15
RTN3-201ENST00000338850 WFDC2Q14508 124 aa7.84□□□□□ -1.15
RTN3-201ENST00000338850 FAM74A4Q5TZK3 123 aa7.84□□□□□ -1.15
RTN3-201ENST00000338850 PPDPFQ9H3Y8 114 aa7.84□□□□□ -1.15
RTN3-201ENST00000338850 PRO1854Q9UHT4 67 aa7.84□□□□□ -1.15
RTN3-201ENST00000338850 TRAV12-2A0A075B6T6 113 aa7.83□□□□□ -1.16
RTN3-201ENST00000338850 TINCRA0A1B0GVN0 87 aa7.83□□□□□ -1.16
RTN3-201ENST00000338850 IGHV3-53P01767 116 aa7.83□□□□□ -1.16
RTN3-201ENST00000338850 KLHL30-AS1Q8NEE0 82 aa7.83□□□□□ -1.16
RTN3-201ENST00000338850 SIGMAR1Q99720 223 aa7.83□□□□□ -1.16
RTN3-201ENST00000338850 SPANXDQ9BXN6 97 aa7.83□□□□□ -1.16
RTN3-201ENST00000338850 SPANXCQ9NY87 97 aa7.83□□□□□ -1.16
RTN3-201ENST00000338850 IGLV5-45A0A087WSX0 123 aa7.82□□□□□ -1.16
RTN3-201ENST00000338850 A0A0J9YXY3 114 aa7.82□□□□□ -1.16
RTN3-201ENST00000338850 A0A1W2PRX2 142 aa7.82□□□□□ -1.16
RTN3-201ENST00000338850 GAGE12HA6NDE8 117 aa7.82□□□□□ -1.16
RTN3-201ENST00000338850 CFC1BP0CG36 223 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms