RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 A0A087WWL8 130 aa7.22□□□□□ -1.25
HMGB3-201ENST00000325307 MRAPQ8TCY5 172 aa7.22□□□□□ -1.25
HMGB3-201ENST00000325307 NCR2O95944 276 aa7.22□□□□□ -1.25
HMGB3-201ENST00000325307 IFI27P40305 119 aaPredicted RBP7.22□□□□□ -1.25
HMGB3-201ENST00000325307 X6R8D5 127 aa7.22□□□□□ -1.25
HMGB3-201ENST00000325307 DEFB4AO15263 64 aa7.21□□□□□ -1.25
HMGB3-201ENST00000325307 NPYP01303 97 aa7.21□□□□□ -1.25
HMGB3-201ENST00000325307 TM2D2Q9BX73 214 aa7.21□□□□□ -1.25
HMGB3-201ENST00000325307 RETNQ9HD89 108 aa7.21□□□□□ -1.25
HMGB3-201ENST00000325307 A0A1W2PPM0 123 aa7.21□□□□□ -1.26
HMGB3-201ENST00000325307 F5H697 171 aa7.21□□□□□ -1.26
HMGB3-201ENST00000325307 NXPH4O95158 308 aa7.21□□□□□ -1.26
HMGB3-201ENST00000325307 NAA38Q9BRA0 125 aaKnown RBP7.21□□□□□ -1.26
HMGB3-201ENST00000325307 DPH3P1Q9H4G8 78 aa7.21□□□□□ -1.26
HMGB3-201ENST00000325307 F5H768 121 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 Q6ZTI0 123 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 PRELID3AQ96N28 172 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 SPANXB1Q9NS25 103 aaPredicted RBP7.2□□□□□ -1.26
HMGB3-201ENST00000325307 IGHV3-73A0A0B4J1V6 119 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 CKS2P33552 79 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 ORMDL3Q8N138 153 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 TRGV2A0A075B6R0 118 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 A6NDN8 102 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 GAGE7O76087 117 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 LEPROTL1O95214 131 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 GAGE12FP0CL80 117 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 GAGE12GP0CL81 117 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 GAGE12IP0CL82 117 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 SEC61GP60059 68 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 MRPL23Q16540 153 aaKnown RBP7.2□□□□□ -1.26
HMGB3-201ENST00000325307 DNAJC30Q96LL9 226 aa7.2□□□□□ -1.26
HMGB3-201ENST00000325307 IGHV4-28A0A0C4DH34 117 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 PLAC8L1A1L4L8 177 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 DAZ2Q13117 558 aaKnown RBP7.19□□□□□ -1.26
HMGB3-201ENST00000325307 ZNF56Q15929 161 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 CDIP1Q9H305 208 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 TRAV26-2A0A0B4J265 109 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 LOC389332A0A1B0GUA5 103 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 A8MWV9 139 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 MIFP14174 115 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 GATA1P15976 413 aaPredicted RBP7.19□□□□□ -1.26
HMGB3-201ENST00000325307 GAGE12JA6NER3 117 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 SPINK8P0C7L1 97 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 DEFB130BP0DP73 79 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 DEFB130AP0DP74 79 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 GAGE4Q13068 117 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 SBSPONQ8IVN8 264 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 IL17DQ8TAD2 202 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 RASL10AQ92737 203 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 OVOL2Q9BRP0 275 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 AP5S1Q9NUS5 200 aa7.19□□□□□ -1.26
HMGB3-201ENST00000325307 J3QR89 54 aa7.18□□□□□ -1.26
HMGB3-201ENST00000325307 IGHV3-53P01767 116 aa7.18□□□□□ -1.26
HMGB3-201ENST00000325307 RPL24P83731 157 aaKnown RBP7.18□□□□□ -1.26
HMGB3-201ENST00000325307 CYSLTR1Q9Y271 337 aa7.18□□□□□ -1.26
HMGB3-201ENST00000325307 LINC01546A6NGU7 62 aa7.18□□□□□ -1.26
HMGB3-201ENST00000325307 CCDC179H3BU77 68 aa7.18□□□□□ -1.26
HMGB3-201ENST00000325307 LGALS9BQ3B8N2 356 aa7.18□□□□□ -1.26
HMGB3-201ENST00000325307 SPANXA1Q9NS26 97 aa7.18□□□□□ -1.26
HMGB3-201ENST00000325307 PHLDA1Q8WV24 401 aaPredicted RBP7.18□□□□□ -1.26
HMGB3-201ENST00000325307 TP53TG1Q9Y2A0 90 aa7.18□□□□□ -1.26
HMGB3-201ENST00000325307 CRYGDP07320 174 aa7.17□□□□□ -1.26
HMGB3-201ENST00000325307 FAM222AQ5U5X8 452 aa7.17□□□□□ -1.26
HMGB3-201ENST00000325307 CFAP126Q5VTH2 177 aa7.17□□□□□ -1.26
HMGB3-201ENST00000325307 H3BUT2 72 aa7.17□□□□□ -1.26
HMGB3-201ENST00000325307 PIK3CD-AS1Q5SR53 167 aa7.17□□□□□ -1.26
HMGB3-201ENST00000325307 Q8NAQ8 132 aa7.17□□□□□ -1.26
HMGB3-201ENST00000325307 PRSS3P2Q8NHM4 247 aa7.17□□□□□ -1.26
HMGB3-201ENST00000325307 IGLV2-18A0A075B6J9 118 aa7.16□□□□□ -1.26
HMGB3-201ENST00000325307 MT-ATP8P03928 68 aa7.16□□□□□ -1.26
HMGB3-201ENST00000325307 NRACQ8N912 160 aa7.16□□□□□ -1.26
HMGB3-201ENST00000325307 KIF25-AS1Q9Y6Z4 181 aa7.16□□□□□ -1.26
HMGB3-201ENST00000325307 SPCS1Q9Y6A9 102 aa7.16□□□□□ -1.26
HMGB3-201ENST00000325307 RHODO00212 210 aa7.15□□□□□ -1.26
HMGB3-201ENST00000325307 SUMO4Q6EEV6 95 aa7.15□□□□□ -1.26
HMGB3-201ENST00000325307 RS1O15537 224 aa7.15□□□□□ -1.26
HMGB3-201ENST00000325307 TMEM126AQ9H061 195 aa7.15□□□□□ -1.26
HMGB3-201ENST00000325307 DNAH3Q8TD57 4116 aa7.15□□□□□ -1.27
HMGB3-201ENST00000325307 TRAV4A0A0B4J268 109 aa7.15□□□□□ -1.27
HMGB3-201ENST00000325307 LYRM9A8MSI8 78 aa7.15□□□□□ -1.27
HMGB3-201ENST00000325307 LINC00315P59091 139 aa7.15□□□□□ -1.27
HMGB3-201ENST00000325307 Q6ZUT4 128 aa7.15□□□□□ -1.27
HMGB3-201ENST00000325307 POM121L12Q8N7R1 296 aa7.15□□□□□ -1.27
HMGB3-201ENST00000325307 SPART-AS1P0CW21 52 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 DAD1P61803 113 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 LGALS9CQ6DKI2 356 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 HIGD1BQ9P298 99 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 DKK2Q9UBU2 259 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 DNHD1Q96M86 4753 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 F8W1H4 67 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 RPL39LQ96EH5 51 aaKnown RBP7.14□□□□□ -1.27
HMGB3-201ENST00000325307 C18orf15Q96N68 181 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 ZMAT4Q9H898 229 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 TRGV4A0A0C4DH28 118 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 XGP55808 180 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 CELA1Q9UNI1 258 aa7.14□□□□□ -1.27
HMGB3-201ENST00000325307 MAP1LC3AQ9H492 121 aa7.13□□□□□ -1.27
HMGB3-201ENST00000325307 H7C1H1 209 aa7.13□□□□□ -1.27
HMGB3-201ENST00000325307 ZFP2Q6ZN57 461 aa7.13□□□□□ -1.27
HMGB3-201ENST00000325307 FABP2P12104 132 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms