RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 H7C423 109 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 AVPP01185 164 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 NPC2P61916 151 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 C2orf82Q6UX34 121 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 CHD8Q9HCK8 2581 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 IGHV3-73A0A0B4J1V6 119 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 TRBV30A0A0K0K1B3 111 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 PRRC2AP48634 2157 aaKnown RBP9.86□□□□□ -0.83
SKA3-202ENST00000314759 TIMM21Q9BVV7 248 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 CD28P10747 220 aa9.85□□□□□ -0.83
SKA3-202ENST00000314759 PROK1P58294 105 aa9.85□□□□□ -0.83
SKA3-202ENST00000314759 HERV-K104P63124 156 aa9.85□□□□□ -0.83
SKA3-202ENST00000314759 MRPS36P82909 103 aaKnown RBP9.85□□□□□ -0.83
SKA3-202ENST00000314759 Q6Q795 121 aa9.85□□□□□ -0.83
SKA3-202ENST00000314759 CLEC2BQ92478 149 aa9.85□□□□□ -0.83
SKA3-202ENST00000314759 DUX3Q96PT4 197 aa9.85□□□□□ -0.83
SKA3-202ENST00000314759 PYGO1Q9Y3Y4 419 aa9.85□□□□□ -0.83
SKA3-202ENST00000314759 RNASE13Q5GAN3 156 aaKnown RBP9.85□□□□□ -0.83
SKA3-202ENST00000314759 IGHV4-30-2A0A087WSY4 118 aa9.84□□□□□ -0.83
SKA3-202ENST00000314759 A8MZ25 164 aa9.84□□□□□ -0.83
SKA3-202ENST00000314759 RBMY1A1P0DJD3 496 aaKnown RBP9.84□□□□□ -0.83
SKA3-202ENST00000314759 RBMY1CP0DJD4 496 aa9.84□□□□□ -0.83
SKA3-202ENST00000314759 RBMY1FQ15415 496 aaKnown RBP9.84□□□□□ -0.83
SKA3-202ENST00000314759 MSMBP08118 114 aa9.83□□□□□ -0.84
SKA3-202ENST00000314759 HTN1P15515 57 aa9.83□□□□□ -0.84
SKA3-202ENST00000314759 SYNJ2BPP57105 145 aa9.83□□□□□ -0.84
SKA3-202ENST00000314759 C3orf56Q8N813 242 aa9.83□□□□□ -0.84
SKA3-202ENST00000314759 LINC01600Q96MT4 127 aa9.83□□□□□ -0.84
SKA3-202ENST00000314759 Q9UF83 564 aa9.83□□□□□ -0.84
SKA3-202ENST00000314759 ICOSQ9Y6W8 199 aa9.83□□□□□ -0.84
SKA3-202ENST00000314759 TRGV11A0A075B6L2 103 aa9.83□□□□□ -0.84
SKA3-202ENST00000314759 IGHV1-58A0A0C4DH39 117 aa9.83□□□□□ -0.84
SKA3-202ENST00000314759 DUX5Q96PT3 197 aa9.83□□□□□ -0.84
SKA3-202ENST00000314759 CCL19Q99731 98 aa9.82□□□□□ -0.84
SKA3-202ENST00000314759 CHCHD5Q9BSY4 110 aa9.82□□□□□ -0.84
SKA3-202ENST00000314759 IGHV4-59P01825 116 aa9.82□□□□□ -0.84
SKA3-202ENST00000314759 NDUFA12Q9UI09 145 aa9.82□□□□□ -0.84
SKA3-202ENST00000314759 PRM2P04554 102 aa9.81□□□□□ -0.84
SKA3-202ENST00000314759 RNF152Q8N8N0 203 aa9.81□□□□□ -0.84
SKA3-202ENST00000314759 EDA2RQ9HAV5 297 aa9.81□□□□□ -0.84
SKA3-202ENST00000314759 MEIG1Q5JSS6 88 aa9.81□□□□□ -0.84
SKA3-202ENST00000314759 FAM110AQ9BQ89 295 aa9.81□□□□□ -0.84
SKA3-202ENST00000314759 KNCNA6PVL3 124 aa9.8□□□□□ -0.84
SKA3-202ENST00000314759 GNLYP22749 145 aa9.8□□□□□ -0.84
SKA3-202ENST00000314759 ATP5J2P56134 94 aa9.8□□□□□ -0.84
SKA3-202ENST00000314759 VSIG2Q96IQ7 327 aa9.8□□□□□ -0.84
SKA3-202ENST00000314759 SPANXDQ9BXN6 97 aa9.8□□□□□ -0.84
SKA3-202ENST00000314759 SPANXCQ9NY87 97 aa9.8□□□□□ -0.84
SKA3-202ENST00000314759 TNFRSF18Q9Y5U5 241 aa9.8□□□□□ -0.84
SKA3-202ENST00000314759 ITPR1Q14643 2758 aa9.8□□□□□ -0.84
SKA3-202ENST00000314759 Q6ZSN1 163 aa9.79□□□□□ -0.84
SKA3-202ENST00000314759 MIAQ16674 131 aa9.79□□□□□ -0.84
SKA3-202ENST00000314759 CHCHD7Q9BUK0 85 aa9.79□□□□□ -0.84
SKA3-202ENST00000314759 CSMD2Q7Z408 3487 aa9.79□□□□□ -0.84
SKA3-202ENST00000314759 TINCRA0A1B0GVN0 87 aa9.79□□□□□ -0.84
SKA3-202ENST00000314759 DEFB112Q30KQ8 113 aa9.79□□□□□ -0.84
SKA3-202ENST00000314759 DAND5Q8N907 189 aa9.79□□□□□ -0.84
SKA3-202ENST00000314759 UBE2D4Q9Y2X8 147 aa9.78□□□□□ -0.84
SKA3-202ENST00000314759 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.78□□□□□ -0.84
SKA3-202ENST00000314759 IGKV2-29A2NJV5 120 aaPredicted RBP9.78□□□□□ -0.84
SKA3-202ENST00000314759 NACAE9PAV3 2078 aa9.78□□□□□ -0.84
SKA3-202ENST00000314759 HOXD3P31249 432 aaPredicted RBP9.77□□□□□ -0.84
SKA3-202ENST00000314759 TMEM89A2RUT3 159 aa9.77□□□□□ -0.85
SKA3-202ENST00000314759 B4DSR2 109 aa9.76□□□□□ -0.85
SKA3-202ENST00000314759 H3BT86 120 aa9.76□□□□□ -0.85
SKA3-202ENST00000314759 LST1O00453 97 aa9.76□□□□□ -0.85
SKA3-202ENST00000314759 TMEM61Q8N0U2 210 aa9.76□□□□□ -0.85
SKA3-202ENST00000314759 SPANXA1Q9NS26 97 aa9.76□□□□□ -0.85
SKA3-202ENST00000314759 COX6CP09669 75 aa9.76□□□□□ -0.85
SKA3-202ENST00000314759 LINC00467Q9BRT7 94 aa9.76□□□□□ -0.85
SKA3-202ENST00000314759 RBMY1BA6NDE4 496 aaKnown RBP9.75□□□□□ -0.85
SKA3-202ENST00000314759 RBMY1EA6NEQ0 496 aaKnown RBP9.75□□□□□ -0.85
SKA3-202ENST00000314759 RBMY1DP0C7P1 496 aaKnown RBP9.75□□□□□ -0.85
SKA3-202ENST00000314759 DEFB131AP59861 70 aa9.75□□□□□ -0.85
SKA3-202ENST00000314759 IGHV3-38A0A0C4DH36 116 aa9.75□□□□□ -0.85
SKA3-202ENST00000314759 DEFB121Q5J5C9 76 aa9.74□□□□□ -0.85
SKA3-202ENST00000314759 CDKN2A-AS1Q9UH64 79 aa9.74□□□□□ -0.85
SKA3-202ENST00000314759 USP9YO00507 2555 aaPredicted RBP9.74□□□□□ -0.85
SKA3-202ENST00000314759 CFAP161Q6P656 301 aa9.74□□□□□ -0.85
SKA3-202ENST00000314759 MRPL23Q16540 153 aaKnown RBP9.73□□□□□ -0.85
SKA3-202ENST00000314759 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.73□□□□□ -0.85
SKA3-202ENST00000314759 ZANQ9Y493 2812 aa9.73□□□□□ -0.85
SKA3-202ENST00000314759 LINC01587Q99440 93 aa9.73□□□□□ -0.85
SKA3-202ENST00000314759 FAM240AA0A1B0GVK7 77 aa9.72□□□□□ -0.85
SKA3-202ENST00000314759 YAE1D1Q9NRH1 226 aa9.72□□□□□ -0.85
SKA3-202ENST00000314759 TRBV7-7A0A0K0K1E9 115 aa9.72□□□□□ -0.85
SKA3-202ENST00000314759 TIMM17BO60830 172 aa9.72□□□□□ -0.85
SKA3-202ENST00000314759 CITED2Q99967 270 aaPredicted RBP9.72□□□□□ -0.85
SKA3-202ENST00000314759 A8MTW9 85 aa9.72□□□□□ -0.85
SKA3-202ENST00000314759 PIK3CD-AS1Q5SR53 167 aa9.72□□□□□ -0.85
SKA3-202ENST00000314759 TMEM101Q96IK0 257 aa9.72□□□□□ -0.85
SKA3-202ENST00000314759 UBE2E2Q96LR5 201 aa9.72□□□□□ -0.85
SKA3-202ENST00000314759 FAM236AA0A1B0GUQ0 79 aa9.71□□□□□ -0.85
SKA3-202ENST00000314759 FAM236BA0A1B0GV22 79 aa9.71□□□□□ -0.85
SKA3-202ENST00000314759 ZNF415Q09FC8 603 aa9.71□□□□□ -0.85
SKA3-202ENST00000314759 DEFB136Q30KP8 78 aa9.71□□□□□ -0.86
SKA3-202ENST00000314759 C18orf65Q6ZTR6 163 aa9.71□□□□□ -0.86
SKA3-202ENST00000314759 SMCR5Q8TEV8 140 aa9.71□□□□□ -0.86
SKA3-202ENST00000314759 A0A0U1RRA0 63 aa9.7□□□□□ -0.86
SKA3-202ENST00000314759 NDUFA1O15239 70 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms