RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 OSTCQ9NRP0 149 aa10.72□□□□□ -0.69
LSM1-201ENST00000311351 EPM2AB3EWF7 344 aa10.71□□□□□ -0.69
LSM1-201ENST00000311351 SMCPP49901 116 aaPredicted RBP10.71□□□□□ -0.69
LSM1-201ENST00000311351 LINC01620Q4KN68 170 aa10.71□□□□□ -0.69
LSM1-201ENST00000311351 SMIM15Q7Z3B0 74 aa10.71□□□□□ -0.69
LSM1-201ENST00000311351 BORCS7Q96B45 105 aa10.71□□□□□ -0.69
LSM1-201ENST00000311351 FAM30AQ9NZY2 134 aa10.71□□□□□ -0.69
LSM1-201ENST00000311351 NAT8Q9UHE5 227 aa10.71□□□□□ -0.69
LSM1-201ENST00000311351 FAM231BA6NCW3 169 aa10.7□□□□□ -0.7
LSM1-201ENST00000311351 SMR3BP02814 79 aaPredicted RBP10.7□□□□□ -0.7
LSM1-201ENST00000311351 RPL39LQ96EH5 51 aaKnown RBP10.7□□□□□ -0.7
LSM1-201ENST00000311351 GFRA4Q9GZZ7 299 aa10.7□□□□□ -0.7
LSM1-201ENST00000311351 HLA-DQA1P01909 254 aa10.69□□□□□ -0.7
LSM1-201ENST00000311351 Q5VSD8 79 aa10.69□□□□□ -0.7
LSM1-201ENST00000311351 LINC00269Q8N2A0 174 aa10.69□□□□□ -0.7
LSM1-201ENST00000311351 TSKUQ8WUA8 353 aa10.69□□□□□ -0.7
LSM1-201ENST00000311351 TMEM243Q9BU79 118 aa10.69□□□□□ -0.7
LSM1-201ENST00000311351 PRR34Q9NV39 138 aa10.69□□□□□ -0.7
LSM1-201ENST00000311351 VPS13BQ7Z7G8 4022 aa10.69□□□□□ -0.7
LSM1-201ENST00000311351 C9JQL5 133 aa10.68□□□□□ -0.7
LSM1-201ENST00000311351 SRSF3P84103 164 aaKnown RBP10.68□□□□□ -0.7
LSM1-201ENST00000311351 ADIRFQ15847 76 aa10.68□□□□□ -0.7
LSM1-201ENST00000311351 MIAQ16674 131 aa10.68□□□□□ -0.7
LSM1-201ENST00000311351 ISOC2Q96AB3 205 aa10.68□□□□□ -0.7
LSM1-201ENST00000311351 IGLV4-60A0A075B6I1 120 aa10.67□□□□□ -0.7
LSM1-201ENST00000311351 AMTP48728 403 aa10.67□□□□□ -0.7
LSM1-201ENST00000311351 RPL23P62829 140 aaKnown RBP10.67□□□□□ -0.7
LSM1-201ENST00000311351 COTL1Q14019 142 aa10.67□□□□□ -0.7
LSM1-201ENST00000311351 CLLU1Q5K131 121 aa10.67□□□□□ -0.7
LSM1-201ENST00000311351 C20orf203Q8NBC4 194 aa10.67□□□□□ -0.7
LSM1-201ENST00000311351 FRZBQ92765 325 aa10.67□□□□□ -0.7
LSM1-201ENST00000311351 HIGD1CA8MV81 97 aa10.66□□□□□ -0.7
LSM1-201ENST00000311351 Q6ZSA8 131 aa10.66□□□□□ -0.7
LSM1-201ENST00000311351 IGLV10-54A0A075B6I4 117 aa10.65□□□□□ -0.7
LSM1-201ENST00000311351 USP17L23D6RBM5 183 aa10.65□□□□□ -0.7
LSM1-201ENST00000311351 REG3AQ06141 175 aa10.65□□□□□ -0.7
LSM1-201ENST00000311351 KRTAP26-1Q6PEX3 210 aa10.65□□□□□ -0.7
LSM1-201ENST00000311351 V9GYV3 84 aa10.65□□□□□ -0.7
LSM1-201ENST00000311351 A0A1B0GUT8 65 aa10.64□□□□□ -0.71
LSM1-201ENST00000311351 UBE2L6O14933 153 aa10.64□□□□□ -0.71
LSM1-201ENST00000311351 GAS8-AS1O95177 125 aa10.64□□□□□ -0.71
LSM1-201ENST00000311351 SDHAF1A6NFY7 115 aa10.63□□□□□ -0.71
LSM1-201ENST00000311351 C14orf177Q52M58 125 aa10.63□□□□□ -0.71
LSM1-201ENST00000311351 NAT8BQ9UHF3 227 aa10.63□□□□□ -0.71
LSM1-201ENST00000311351 A0A1B0GUV1 79 aa10.62□□□□□ -0.71
LSM1-201ENST00000311351 PNRC1Q12796 327 aaPredicted RBP10.62□□□□□ -0.71
LSM1-201ENST00000311351 SRRM2Q9UQ35 2752 aaKnown RBP10.62□□□□□ -0.71
LSM1-201ENST00000311351 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.61□□□□□ -0.71
LSM1-201ENST00000311351 IGKV2-29A2NJV5 120 aaPredicted RBP10.61□□□□□ -0.71
LSM1-201ENST00000311351 APCSP02743 223 aa10.61□□□□□ -0.71
LSM1-201ENST00000311351 PRSS1P07477 247 aa10.61□□□□□ -0.71
LSM1-201ENST00000311351 RIGQ13278 110 aa10.61□□□□□ -0.71
LSM1-201ENST00000311351 AMN1Q8IY45 258 aa10.61□□□□□ -0.71
LSM1-201ENST00000311351 NUP35Q8NFH5 326 aa10.61□□□□□ -0.71
LSM1-201ENST00000311351 RNF185Q96GF1 192 aa10.61□□□□□ -0.71
LSM1-201ENST00000311351 TMEM191AQ9H0A3 160 aa10.61□□□□□ -0.71
LSM1-201ENST00000311351 FLG2Q5D862 2391 aaPredicted RBP10.6□□□□□ -0.71
LSM1-201ENST00000311351 PPP1R2P9O14990 202 aa10.6□□□□□ -0.71
LSM1-201ENST00000311351 INAFM2P0DMQ5 153 aa10.6□□□□□ -0.71
LSM1-201ENST00000311351 IFITM2Q01629 132 aa10.6□□□□□ -0.71
LSM1-201ENST00000311351 UQCC3Q6UW78 93 aa10.6□□□□□ -0.71
LSM1-201ENST00000311351 SCXQ7RTU7 201 aa10.6□□□□□ -0.71
LSM1-201ENST00000311351 TRBV6-5A0A0K0K1A5 114 aa10.59□□□□□ -0.71
LSM1-201ENST00000311351 A0A1B0GW15 77 aa10.59□□□□□ -0.71
LSM1-201ENST00000311351 FAM229AH3BQW9 127 aa10.59□□□□□ -0.71
LSM1-201ENST00000311351 NCR2O95944 276 aa10.59□□□□□ -0.71
LSM1-201ENST00000311351 LORP23490 312 aaPredicted RBP10.59□□□□□ -0.71
LSM1-201ENST00000311351 RPS10P46783 165 aaKnown RBP10.59□□□□□ -0.71
LSM1-201ENST00000311351 TRAV8-4A0A0B4J246 113 aa10.58□□□□□ -0.72
LSM1-201ENST00000311351 IGKV3OR2-268A0A0C4DH90 116 aa10.58□□□□□ -0.72
LSM1-201ENST00000311351 SMIM27A0A1W2PRY6 76 aa10.58□□□□□ -0.72
LSM1-201ENST00000311351 SMKR1H3BMG3 65 aa10.58□□□□□ -0.72
LSM1-201ENST00000311351 RAB4AP20338 218 aa10.58□□□□□ -0.72
LSM1-201ENST00000311351 TMEM242Q9NWH2 141 aa10.58□□□□□ -0.72
LSM1-201ENST00000311351 I3L3M4 83 aa10.57□□□□□ -0.72
LSM1-201ENST00000311351 TSHBP01222 138 aa10.57□□□□□ -0.72
LSM1-201ENST00000311351 S100A8P05109 93 aa10.57□□□□□ -0.72
LSM1-201ENST00000311351 PMCHP20382 165 aa10.57□□□□□ -0.72
LSM1-201ENST00000311351 AMMECR1LQ6DCA0 310 aa10.57□□□□□ -0.72
LSM1-201ENST00000311351 RNASEKQ6P5S7 137 aaKnown RBP10.57□□□□□ -0.72
LSM1-201ENST00000311351 ST20Q9HBF5 79 aa10.57□□□□□ -0.72
LSM1-201ENST00000311351 MYCBP2O75592 4640 aa10.57□□□□□ -0.72
LSM1-201ENST00000311351 MT-ND4LP03901 98 aa10.56□□□□□ -0.72
LSM1-201ENST00000311351 FGF6P10767 208 aa10.56□□□□□ -0.72
LSM1-201ENST00000311351 LINC00528Q8N1L1 170 aa10.56□□□□□ -0.72
LSM1-201ENST00000311351 MRAP2Q96G30 205 aa10.56□□□□□ -0.72
LSM1-201ENST00000311351 CHAC1Q9BUX1 264 aa10.55□□□□□ -0.72
LSM1-201ENST00000311351 GAGE12HA6NDE8 117 aa10.54□□□□□ -0.72
LSM1-201ENST00000311351 PPP1R17O96001 155 aa10.54□□□□□ -0.72
LSM1-201ENST00000311351 POLR2KP53803 58 aaKnown RBP10.54□□□□□ -0.72
LSM1-201ENST00000311351 ANAPC16Q96DE5 110 aa10.54□□□□□ -0.72
LSM1-201ENST00000311351 DMBT1Q9UGM3 2413 aaPredicted RBP10.54□□□□□ -0.72
LSM1-201ENST00000311351 hDV102S1A0JD36 115 aa10.53□□□□□ -0.72
LSM1-201ENST00000311351 H7C423 109 aa10.53□□□□□ -0.72
LSM1-201ENST00000311351 ESDP10768 282 aa10.53□□□□□ -0.72
LSM1-201ENST00000311351 CAMPP49913 170 aa10.53□□□□□ -0.72
LSM1-201ENST00000311351 NRACQ8N912 160 aa10.53□□□□□ -0.72
LSM1-201ENST00000311351 CIRBP-AS1Q8TBR5 109 aa10.53□□□□□ -0.72
LSM1-201ENST00000311351 TRBV27A0A0K0K1C4 114 aa10.52□□□□□ -0.73
LSM1-201ENST00000311351 F8W036 122 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms