RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SOCS3O14543 225 aa10.62□□□□□ -0.71
SDC1-201ENST00000254351 C20orf203Q8NBC4 194 aa10.62□□□□□ -0.71
SDC1-201ENST00000254351 HIVEP3Q5T1R4 2406 aa10.62□□□□□ -0.71
SDC1-201ENST00000254351 LENEPQ9Y5L5 61 aa10.62□□□□□ -0.71
SDC1-201ENST00000254351 WNK1Q9H4A3 2382 aa10.61□□□□□ -0.71
SDC1-201ENST00000254351 MYO9AB2RTY4 2548 aa10.61□□□□□ -0.71
SDC1-201ENST00000254351 SIRPDQ9H106 197 aa10.61□□□□□ -0.71
SDC1-201ENST00000254351 TRBV30A0A0K0K1B3 111 aa10.61□□□□□ -0.71
SDC1-201ENST00000254351 BPESC1Q9GZL8 116 aa10.61□□□□□ -0.71
SDC1-201ENST00000254351 POM121L12Q8N7R1 296 aa10.6□□□□□ -0.71
SDC1-201ENST00000254351 A0A1W2PPR1 153 aa10.6□□□□□ -0.71
SDC1-201ENST00000254351 NPFFO15130 113 aa10.6□□□□□ -0.71
SDC1-201ENST00000254351 LINC00694P0DN24 101 aa10.6□□□□□ -0.71
SDC1-201ENST00000254351 IGHV3-16A0A0C4DH30 117 aa10.59□□□□□ -0.71
SDC1-201ENST00000254351 LITAFQ99732 161 aa10.59□□□□□ -0.71
SDC1-201ENST00000254351 ZANQ9Y493 2812 aa10.59□□□□□ -0.71
SDC1-201ENST00000254351 NXPH4O95158 308 aa10.58□□□□□ -0.72
SDC1-201ENST00000254351 HOXD3P31249 432 aaPredicted RBP10.58□□□□□ -0.72
SDC1-201ENST00000254351 SYNJ2BPP57105 145 aa10.58□□□□□ -0.72
SDC1-201ENST00000254351 C9orf153Q5TBE3 101 aa10.58□□□□□ -0.72
SDC1-201ENST00000254351 POLQO75417 2590 aa10.58□□□□□ -0.72
SDC1-201ENST00000254351 C10orf99Q6UWK7 81 aa10.58□□□□□ -0.72
SDC1-201ENST00000254351 M0QXV9 152 aa10.57□□□□□ -0.72
SDC1-201ENST00000254351 NDUFA4O00483 81 aa10.57□□□□□ -0.72
SDC1-201ENST00000254351 SMCR5Q8TEV8 140 aa10.57□□□□□ -0.72
SDC1-201ENST00000254351 VPREB3Q9UKI3 123 aa10.57□□□□□ -0.72
SDC1-201ENST00000254351 KLLNB2CW77 178 aa10.56□□□□□ -0.72
SDC1-201ENST00000254351 FAM19A4Q96LR4 140 aa10.56□□□□□ -0.72
SDC1-201ENST00000254351 Q9HAA7 133 aa10.56□□□□□ -0.72
SDC1-201ENST00000254351 NDUFA7O95182 113 aa10.55□□□□□ -0.72
SDC1-201ENST00000254351 Q8N2B8 174 aa10.55□□□□□ -0.72
SDC1-201ENST00000254351 TMEM101Q96IK0 257 aa10.55□□□□□ -0.72
SDC1-201ENST00000254351 CDKN2A-AS1Q9UH64 79 aa10.55□□□□□ -0.72
SDC1-201ENST00000254351 JMJD1CQ15652 2540 aa10.55□□□□□ -0.72
SDC1-201ENST00000254351 LST1O00453 97 aa10.55□□□□□ -0.72
SDC1-201ENST00000254351 IGHV1-69P01742 117 aa10.55□□□□□ -0.72
SDC1-201ENST00000254351 TMEM61Q8N0U2 210 aa10.55□□□□□ -0.72
SDC1-201ENST00000254351 LINC01587Q99440 93 aa10.55□□□□□ -0.72
SDC1-201ENST00000254351 DAZ1Q9NQZ3 744 aaKnown RBP10.55□□□□□ -0.72
SDC1-201ENST00000254351 IGHV1-58A0A0C4DH39 117 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 H3BUX3 64 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 RHOHQ15669 191 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 MIAQ16674 131 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 HIST2H2BDQ6DRA6 164 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 Q6Q795 121 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 MOB4Q9Y3A3 225 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 MED14OSP0DP75 135 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 NSUN5P1Q3KNT7 163 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 GAGE2AQ6NT46 116 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 TNFRSF18Q9Y5U5 241 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 TLN2Q9Y4G6 2542 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 PTPN13Q12923 2485 aa10.54□□□□□ -0.72
SDC1-201ENST00000254351 USP24Q9UPU5 2620 aa10.53□□□□□ -0.72
SDC1-201ENST00000254351 EDA2RQ9HAV5 297 aa10.53□□□□□ -0.72
SDC1-201ENST00000254351 USP9XQ93008 2570 aaPredicted RBP10.53□□□□□ -0.72
SDC1-201ENST00000254351 ABCA2Q9BZC7 2435 aa10.53□□□□□ -0.72
SDC1-201ENST00000254351 FAM223BA6NKX1 122 aa10.53□□□□□ -0.72
SDC1-201ENST00000254351 FAM223AQ8IWN6 122 aa10.53□□□□□ -0.72
SDC1-201ENST00000254351 VSIG2Q96IQ7 327 aa10.53□□□□□ -0.72
SDC1-201ENST00000254351 SONP18583 2426 aaKnown RBP10.52□□□□□ -0.72
SDC1-201ENST00000254351 UTP20O75691 2785 aaKnown RBP10.52□□□□□ -0.72
SDC1-201ENST00000254351 IGHV1OR15-1A0A075B7D0 117 aa10.52□□□□□ -0.72
SDC1-201ENST00000254351 H3BT86 120 aa10.52□□□□□ -0.72
SDC1-201ENST00000254351 IGHV4-38-2P0DP08 117 aa10.52□□□□□ -0.72
SDC1-201ENST00000254351 Q6ZSN1 163 aa10.52□□□□□ -0.72
SDC1-201ENST00000254351 ADORA2A-AS1P86434 159 aa10.52□□□□□ -0.73
SDC1-201ENST00000254351 DAZ2Q13117 558 aaKnown RBP10.52□□□□□ -0.73
SDC1-201ENST00000254351 DAZ4Q86SG3 579 aaKnown RBP10.52□□□□□ -0.73
SDC1-201ENST00000254351 FAM104AQ969W3 186 aa10.52□□□□□ -0.73
SDC1-201ENST00000254351 Q9H8V8 135 aa10.52□□□□□ -0.73
SDC1-201ENST00000254351 DAZ3Q9NR90 486 aaKnown RBP10.52□□□□□ -0.73
SDC1-201ENST00000254351 DGAT2L7PQ6IED9 249 aa10.51□□□□□ -0.73
SDC1-201ENST00000254351 CITED2Q99967 270 aaPredicted RBP10.51□□□□□ -0.73
SDC1-201ENST00000254351 TRAV13-1A0A0B4J241 112 aa10.51□□□□□ -0.73
SDC1-201ENST00000254351 TRBV6-5A0A0K0K1A5 114 aa10.51□□□□□ -0.73
SDC1-201ENST00000254351 FBXL19-AS1Q494R0 122 aa10.51□□□□□ -0.73
SDC1-201ENST00000254351 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.51□□□□□ -0.73
SDC1-201ENST00000254351 DCANP1Q8TF63 244 aa10.51□□□□□ -0.73
SDC1-201ENST00000254351 YAE1D1Q9NRH1 226 aa10.51□□□□□ -0.73
SDC1-201ENST00000254351 IGHG2P01859 326 aa10.51□□□□□ -0.73
SDC1-201ENST00000254351 LINC00467Q9BRT7 94 aa10.5□□□□□ -0.73
SDC1-201ENST00000254351 NIPBLQ6KC79 2804 aaeCLIP10.5□□□□□ -0.73
SDC1-201ENST00000254351 HERVK_113P63121 156 aa10.49□□□□□ -0.73
SDC1-201ENST00000254351 COX6A2Q02221 97 aa10.49□□□□□ -0.73
SDC1-201ENST00000254351 PIK3CD-AS1Q5SR53 167 aa10.49□□□□□ -0.73
SDC1-201ENST00000254351 C11orf71Q6IPW1 123 aa10.49□□□□□ -0.73
SDC1-201ENST00000254351 C9orf85Q96MD7 179 aa10.49□□□□□ -0.73
SDC1-201ENST00000254351 IGKV3OR2-268A0A0C4DH90 116 aa10.49□□□□□ -0.73
SDC1-201ENST00000254351 BAALC-AS2P0C853 105 aa10.49□□□□□ -0.73
SDC1-201ENST00000254351 ATP5J2P56134 94 aa10.49□□□□□ -0.73
SDC1-201ENST00000254351 MRPS36P82909 103 aaKnown RBP10.49□□□□□ -0.73
SDC1-201ENST00000254351 SDIM1Q6ZPB5 146 aa10.49□□□□□ -0.73
SDC1-201ENST00000254351 IGHV3OR16-12A0A075B7B8 117 aa10.48□□□□□ -0.73
SDC1-201ENST00000254351 RBMY1A1P0DJD3 496 aaKnown RBP10.48□□□□□ -0.73
SDC1-201ENST00000254351 RBMY1CP0DJD4 496 aa10.48□□□□□ -0.73
SDC1-201ENST00000254351 GNLYP22749 145 aa10.48□□□□□ -0.73
SDC1-201ENST00000254351 RBMY1FQ15415 496 aaKnown RBP10.48□□□□□ -0.73
SDC1-201ENST00000254351 APRG1Q8IVJ8 170 aa10.48□□□□□ -0.73
SDC1-201ENST00000254351 IGKV3D-7A0A0C4DH55 119 aa10.47□□□□□ -0.73
SDC1-201ENST00000254351 FBN2P35556 2912 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms