RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 C9orf66Q5T8R8 295 aa13.25□□□□□ -0.29
HOXC11-201ENST00000243082 HIGD1BQ9P298 99 aa13.25□□□□□ -0.29
HOXC11-201ENST00000243082 TRAV4A0A0B4J268 109 aa13.24□□□□□ -0.29
HOXC11-201ENST00000243082 LINC00469Q8N7U9 141 aa13.24□□□□□ -0.29
HOXC11-201ENST00000243082 CHCHD7Q9BUK0 85 aa13.24□□□□□ -0.29
HOXC11-201ENST00000243082 ZMAT5Q9UDW3 170 aaKnown RBP13.24□□□□□ -0.29
HOXC11-201ENST00000243082 IGLV4-3A0A075B6K6 122 aa13.23□□□□□ -0.29
HOXC11-201ENST00000243082 PAPPA-AS1Q5QFB9 102 aa13.23□□□□□ -0.29
HOXC11-201ENST00000243082 E9PLD3 99 aa13.23□□□□□ -0.29
HOXC11-201ENST00000243082 RRN3P1Q2M238 152 aa13.23□□□□□ -0.29
HOXC11-201ENST00000243082 ZNRF2Q8NHG8 242 aa13.23□□□□□ -0.29
HOXC11-201ENST00000243082 FAM104AQ969W3 186 aa13.23□□□□□ -0.29
HOXC11-201ENST00000243082 PYGO1Q9Y3Y4 419 aa13.23□□□□□ -0.29
HOXC11-201ENST00000243082 IGHV3-38A0A0C4DH36 116 aa13.22□□□□□ -0.29
HOXC11-201ENST00000243082 PHLDA1Q8WV24 401 aaPredicted RBP13.22□□□□□ -0.29
HOXC11-201ENST00000243082 OVOL2Q9BRP0 275 aa13.22□□□□□ -0.29
HOXC11-201ENST00000243082 COX11Q9Y6N1 276 aa13.22□□□□□ -0.29
HOXC11-201ENST00000243082 TAX1BP3O14907 124 aa13.22□□□□□ -0.29
HOXC11-201ENST00000243082 OR11H2Q8NH07 326 aa13.22□□□□□ -0.29
HOXC11-201ENST00000243082 SEC11AP67812 179 aa13.21□□□□□ -0.29
HOXC11-201ENST00000243082 ORAOV1Q8WV07 137 aa13.21□□□□□ -0.29
HOXC11-201ENST00000243082 PRADC1Q9BSG0 188 aa13.21□□□□□ -0.29
HOXC11-201ENST00000243082 CHAC1Q9BUX1 264 aa13.21□□□□□ -0.29
HOXC11-201ENST00000243082 K7EQD1 137 aa13.2□□□□□ -0.3
HOXC11-201ENST00000243082 NFE4Q86UQ8 179 aa13.2□□□□□ -0.3
HOXC11-201ENST00000243082 ATRQ13535 2644 aa13.19□□□□□ -0.3
HOXC11-201ENST00000243082 TRBV7-3A0A075B6L6 115 aa13.19□□□□□ -0.3
HOXC11-201ENST00000243082 GAGE12BA1L429 117 aa13.19□□□□□ -0.3
HOXC11-201ENST00000243082 GAGE7O76087 117 aa13.19□□□□□ -0.3
HOXC11-201ENST00000243082 GAGE12FP0CL80 117 aa13.19□□□□□ -0.3
HOXC11-201ENST00000243082 GAGE12GP0CL81 117 aa13.19□□□□□ -0.3
HOXC11-201ENST00000243082 GAGE12IP0CL82 117 aa13.19□□□□□ -0.3
HOXC11-201ENST00000243082 COTL1Q14019 142 aa13.19□□□□□ -0.3
HOXC11-201ENST00000243082 CEMP1Q6PRD7 247 aaPredicted RBP13.19□□□□□ -0.3
HOXC11-201ENST00000243082 VCX2Q9H322 139 aa13.19□□□□□ -0.3
HOXC11-201ENST00000243082 TEP1Q99973 2627 aaKnown RBP13.19□□□□□ -0.3
HOXC11-201ENST00000243082 FLNBO75369 2602 aaKnown RBP13.19□□□□□ -0.3
HOXC11-201ENST00000243082 TRBV10-1A0A0K0K1A3 114 aa13.18□□□□□ -0.3
HOXC11-201ENST00000243082 MYMXA0A1B0GTQ4 84 aa13.18□□□□□ -0.3
HOXC11-201ENST00000243082 GAGE1Q13065 139 aa13.18□□□□□ -0.3
HOXC11-201ENST00000243082 SLC25A29Q8N8R3 303 aa13.18□□□□□ -0.3
HOXC11-201ENST00000243082 AMELXQ99217 191 aa13.18□□□□□ -0.3
HOXC11-201ENST00000243082 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.18□□□□□ -0.3
HOXC11-201ENST00000243082 IGKV2-29A2NJV5 120 aaPredicted RBP13.18□□□□□ -0.3
HOXC11-201ENST00000243082 UBE2D4Q9Y2X8 147 aa13.18□□□□□ -0.3
HOXC11-201ENST00000243082 F8P00451 2351 aa13.18□□□□□ -0.3
HOXC11-201ENST00000243082 TMEM170BQ5T4T1 132 aa13.17□□□□□ -0.3
HOXC11-201ENST00000243082 TRGV2A0A075B6R0 118 aa13.17□□□□□ -0.3
HOXC11-201ENST00000243082 NPSP0C0P6 89 aa13.17□□□□□ -0.3
HOXC11-201ENST00000243082 CRYBA4P53673 196 aa13.17□□□□□ -0.3
HOXC11-201ENST00000243082 RPL36AP83881 106 aaKnown RBP13.16□□□□□ -0.3
HOXC11-201ENST00000243082 RPL36ALQ969Q0 106 aaKnown RBP13.16□□□□□ -0.3
HOXC11-201ENST00000243082 SPANXA1Q9NS26 97 aa13.16□□□□□ -0.3
HOXC11-201ENST00000243082 A0A0J9YXV3 536 aa13.15□□□□□ -0.3
HOXC11-201ENST00000243082 HERVK_113P61574 105 aa13.15□□□□□ -0.3
HOXC11-201ENST00000243082 WFDC9Q8NEX5 89 aa13.15□□□□□ -0.3
HOXC11-201ENST00000243082 A6NDN8 102 aa13.14□□□□□ -0.31
HOXC11-201ENST00000243082 CIDEAO60543 219 aa13.14□□□□□ -0.31
HOXC11-201ENST00000243082 UBE2D3P61077 147 aa13.14□□□□□ -0.31
HOXC11-201ENST00000243082 UBE2D2P62837 147 aa13.14□□□□□ -0.31
HOXC11-201ENST00000243082 TRRAPQ9Y4A5 3859 aa13.14□□□□□ -0.31
HOXC11-201ENST00000243082 GCSHP23434 173 aa13.13□□□□□ -0.31
HOXC11-201ENST00000243082 GAGE12JA6NER3 117 aa13.13□□□□□ -0.31
HOXC11-201ENST00000243082 K7EP13 123 aa13.13□□□□□ -0.31
HOXC11-201ENST00000243082 ZNF22P17026 224 aaPredicted RBP13.13□□□□□ -0.31
HOXC11-201ENST00000243082 FXYD2P54710 66 aa13.13□□□□□ -0.31
HOXC11-201ENST00000243082 GAGE4Q13068 117 aa13.13□□□□□ -0.31
HOXC11-201ENST00000243082 GAGE5Q13069 117 aa13.13□□□□□ -0.31
HOXC11-201ENST00000243082 GAGE13Q4V321 117 aa13.13□□□□□ -0.31
HOXC11-201ENST00000243082 RNASE13Q5GAN3 156 aaKnown RBP13.13□□□□□ -0.31
HOXC11-201ENST00000243082 DAZ4Q86SG3 579 aaKnown RBP13.13□□□□□ -0.31
HOXC11-201ENST00000243082 DAZ3Q9NR90 486 aaKnown RBP13.13□□□□□ -0.31
HOXC11-201ENST00000243082 X6R8D5 127 aa13.13□□□□□ -0.31
HOXC11-201ENST00000243082 TMEM223A0PJW6 202 aa13.12□□□□□ -0.31
HOXC11-201ENST00000243082 ZNF815PA8K554 130 aa13.12□□□□□ -0.31
HOXC11-201ENST00000243082 NTM-AS1Q6ZSK4 140 aa13.12□□□□□ -0.31
HOXC11-201ENST00000243082 CEND1Q8N111 149 aa13.12□□□□□ -0.31
HOXC11-201ENST00000243082 TM2D2Q9BX73 214 aa13.12□□□□□ -0.31
HOXC11-201ENST00000243082 TRBV6-4A0A1B0GX49 114 aa13.12□□□□□ -0.31
HOXC11-201ENST00000243082 TSPEAR-AS2P59090 65 aa13.12□□□□□ -0.31
HOXC11-201ENST00000243082 MRPS36P82909 103 aaKnown RBP13.12□□□□□ -0.31
HOXC11-201ENST00000243082 TAL2Q16559 108 aa13.12□□□□□ -0.31
HOXC11-201ENST00000243082 Q6ZUT4 128 aa13.11□□□□□ -0.31
HOXC11-201ENST00000243082 H3BRM9 83 aa13.1□□□□□ -0.31
HOXC11-201ENST00000243082 FHL2Q14192 279 aa13.1□□□□□ -0.31
HOXC11-201ENST00000243082 PLEKHB2Q96CS7 222 aa13.1□□□□□ -0.31
HOXC11-201ENST00000243082 LOC100131303A0A0U1RQF7 123 aa13.1□□□□□ -0.31
HOXC11-201ENST00000243082 LINC00612Q8N6U2 182 aa13.1□□□□□ -0.31
HOXC11-201ENST00000243082 KIR2DL5BQ8NHK3 375 aa13.1□□□□□ -0.31
HOXC11-201ENST00000243082 TIMM21Q9BVV7 248 aa13.1□□□□□ -0.31
HOXC11-201ENST00000243082 TRGV4A0A0C4DH28 118 aa13.09□□□□□ -0.31
HOXC11-201ENST00000243082 WIPF1O43516 503 aa13.09□□□□□ -0.31
HOXC11-201ENST00000243082 SMIM9A6NGZ8 99 aa13.08□□□□□ -0.31
HOXC11-201ENST00000243082 LINC00694P0DN24 101 aa13.08□□□□□ -0.31
HOXC11-201ENST00000243082 HIST1H4GQ99525 98 aa13.08□□□□□ -0.31
HOXC11-201ENST00000243082 J3QQQ9 107 aa13.08□□□□□ -0.32
HOXC11-201ENST00000243082 SBSPONQ8IVN8 264 aa13.08□□□□□ -0.32
HOXC11-201ENST00000243082 LEPROTO15243 131 aa13.07□□□□□ -0.32
HOXC11-201ENST00000243082 DEFB130BP0DP73 79 aa13.06□□□□□ -0.32
HOXC11-201ENST00000243082 DEFB130AP0DP74 79 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms