RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 FAM229AH3BQW9 127 aa6.79□□□□□ -1.32
SCN1A-222ENST00000642141 CENPWQ5EE01 88 aa6.79□□□□□ -1.32
SCN1A-222ENST00000642141 TOR2AQ5JU69 321 aa6.79□□□□□ -1.32
SCN1A-222ENST00000642141 KCNIP4Q6PIL6 250 aa6.79□□□□□ -1.32
SCN1A-222ENST00000642141 TRBV6-8A0A0A6YYG3 113 aa6.78□□□□□ -1.32
SCN1A-222ENST00000642141 SLC51BQ86UW2 128 aa6.78□□□□□ -1.32
SCN1A-222ENST00000642141 C15orf54Q8N8G6 183 aa6.78□□□□□ -1.32
SCN1A-222ENST00000642141 OR2D3Q8NGH3 330 aa6.78□□□□□ -1.32
SCN1A-222ENST00000642141 DEFB104AQ8WTQ1 72 aa6.78□□□□□ -1.32
SCN1A-222ENST00000642141 DAZAP1Q96EP5 407 aaKnown RBP6.78□□□□□ -1.32
SCN1A-222ENST00000642141 CHCHD5Q9BSY4 110 aa6.78□□□□□ -1.32
SCN1A-222ENST00000642141 TMEM70Q9BUB7 260 aa6.78□□□□□ -1.32
SCN1A-222ENST00000642141 MANBALQ9NQG1 85 aa6.78□□□□□ -1.32
SCN1A-222ENST00000642141 SNAI2O43623 268 aa6.77□□□□□ -1.33
SCN1A-222ENST00000642141 IGLV2-8P01709 118 aa6.77□□□□□ -1.33
SCN1A-222ENST00000642141 MGPP08493 103 aa6.77□□□□□ -1.33
SCN1A-222ENST00000642141 OR5AL1P0C617 328 aa6.77□□□□□ -1.33
SCN1A-222ENST00000642141 SMIM17P0DL12 118 aa6.77□□□□□ -1.33
SCN1A-222ENST00000642141 MPV17L2Q567V2 206 aa6.77□□□□□ -1.33
SCN1A-222ENST00000642141 Q8N976 141 aa6.77□□□□□ -1.33
SCN1A-222ENST00000642141 OR10G8Q8NGN5 311 aa6.77□□□□□ -1.33
SCN1A-222ENST00000642141 RMI2Q96E14 147 aa6.77□□□□□ -1.33
SCN1A-222ENST00000642141 SSBP4Q9BWG4 385 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-222ENST00000642141 TRAV1-1A0A0B4J248 108 aa6.76□□□□□ -1.33
SCN1A-222ENST00000642141 ANGP03950 147 aaKnown RBP6.76□□□□□ -1.33
SCN1A-222ENST00000642141 GNG4P50150 75 aa6.76□□□□□ -1.33
SCN1A-222ENST00000642141 GAGE6Q13070 117 aa6.76□□□□□ -1.33
SCN1A-222ENST00000642141 ELOBQ15370 118 aa6.76□□□□□ -1.33
SCN1A-222ENST00000642141 CLPSL2Q6UWE3 100 aa6.76□□□□□ -1.33
SCN1A-222ENST00000642141 ENHOQ6UWT2 76 aa6.76□□□□□ -1.33
SCN1A-222ENST00000642141 NTM-AS1Q6ZSK4 140 aa6.76□□□□□ -1.33
SCN1A-222ENST00000642141 C11orf52Q96A22 123 aa6.76□□□□□ -1.33
SCN1A-222ENST00000642141 KIF25-AS1Q9Y6Z4 181 aa6.76□□□□□ -1.33
SCN1A-222ENST00000642141 HERC1Q15751 4861 aa6.76□□□□□ -1.33
SCN1A-222ENST00000642141 TEX46H3BTG2 121 aa6.75□□□□□ -1.33
SCN1A-222ENST00000642141 CXCL1P09341 107 aa6.75□□□□□ -1.33
SCN1A-222ENST00000642141 SULT1A2P50226 295 aa6.75□□□□□ -1.33
SCN1A-222ENST00000642141 RAB5CP51148 216 aa6.75□□□□□ -1.33
SCN1A-222ENST00000642141 MEF2BQ02080 365 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-222ENST00000642141 EIF5AL1Q6IS14 154 aaKnown RBP6.75□□□□□ -1.33
SCN1A-222ENST00000642141 FER1L6-AS1Q8NA97 138 aa6.75□□□□□ -1.33
SCN1A-222ENST00000642141 AP1S3Q96PC3 154 aa6.75□□□□□ -1.33
SCN1A-222ENST00000642141 COX11Q9Y6N1 276 aa6.75□□□□□ -1.33
SCN1A-222ENST00000642141 DNAH8Q96JB1 4490 aa6.75□□□□□ -1.33
SCN1A-222ENST00000642141 TRBV20OR9-2A0A075B6H5 130 aa6.74□□□□□ -1.33
SCN1A-222ENST00000642141 C19orf71A6NCJ1 209 aa6.74□□□□□ -1.33
SCN1A-222ENST00000642141 P01737 135 aa6.74□□□□□ -1.33
SCN1A-222ENST00000642141 CRPP02741 224 aa6.74□□□□□ -1.33
SCN1A-222ENST00000642141 IGLC6P0CF74 106 aa6.74□□□□□ -1.33
SCN1A-222ENST00000642141 ATRAIDQ6UW56 229 aa6.74□□□□□ -1.33
SCN1A-222ENST00000642141 LYZL1Q6UWQ5 148 aa6.74□□□□□ -1.33
SCN1A-222ENST00000642141 C1orf43Q9BWL3 253 aa6.74□□□□□ -1.33
SCN1A-222ENST00000642141 M0QY20 66 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 PDE6DO43924 150 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 IFNA1P01562 189 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 HLA-DQA1P01909 254 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 RPS20P60866 119 aaKnown RBP6.73□□□□□ -1.33
SCN1A-222ENST00000642141 Q0VG73 95 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 SUMO4Q6EEV6 95 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 UQCC3Q6UW78 93 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 COMMD7Q86VX2 200 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 LINC00528Q8N1L1 170 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 LINC00269Q8N2A0 174 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-222ENST00000642141 CHCHD7Q9BUK0 85 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 VAX2Q9UIW0 290 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 MYCBP2O75592 4640 aa6.73□□□□□ -1.33
SCN1A-222ENST00000642141 BCL2P10415 239 aa6.72□□□□□ -1.33
SCN1A-222ENST00000642141 NTF3P20783 257 aa6.72□□□□□ -1.33
SCN1A-222ENST00000642141 RBX1P62877 108 aa6.72□□□□□ -1.33
SCN1A-222ENST00000642141 Q6ZSA8 131 aa6.72□□□□□ -1.33
SCN1A-222ENST00000642141 SCXQ7RTU7 201 aa6.72□□□□□ -1.33
SCN1A-222ENST00000642141 NUDT10Q8NFP7 164 aa6.72□□□□□ -1.33
SCN1A-222ENST00000642141 NUDT11Q96G61 164 aa6.72□□□□□ -1.33
SCN1A-222ENST00000642141 RNASE7Q9H1E1 156 aaKnown RBP6.72□□□□□ -1.33
SCN1A-222ENST00000642141 FLG2Q5D862 2391 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-222ENST00000642141 IGLV10-54A0A075B6I4 117 aa6.71□□□□□ -1.34
SCN1A-222ENST00000642141 TRBV25-1A0A075B6N4 114 aa6.71□□□□□ -1.34
SCN1A-222ENST00000642141 USP17L23D6RBM5 183 aa6.71□□□□□ -1.34
SCN1A-222ENST00000642141 CACNG7P62955 275 aa6.71□□□□□ -1.34
SCN1A-222ENST00000642141 IGHV1-24A0A0C4DH33 117 aa6.7□□□□□ -1.34
SCN1A-222ENST00000642141 XKRY2A2RUG3 117 aa6.7□□□□□ -1.34
SCN1A-222ENST00000642141 F2Z2F3 143 aa6.7□□□□□ -1.34
SCN1A-222ENST00000642141 K7EN84 100 aa6.7□□□□□ -1.34
SCN1A-222ENST00000642141 CEBPGP53567 150 aa6.7□□□□□ -1.34
SCN1A-222ENST00000642141 TWIST1Q15672 202 aa6.7□□□□□ -1.34
SCN1A-222ENST00000642141 RASL11AQ6T310 242 aa6.7□□□□□ -1.34
SCN1A-222ENST00000642141 ALKAL2Q6UX46 152 aa6.7□□□□□ -1.34
SCN1A-222ENST00000642141 OCC1Q8TAD7 63 aa6.7□□□□□ -1.34
SCN1A-222ENST00000642141 TRAV26-2A0A0B4J265 109 aa6.69□□□□□ -1.34
SCN1A-222ENST00000642141 H7C1H1 209 aa6.69□□□□□ -1.34
SCN1A-222ENST00000642141 PLA2G1BP04054 148 aaKnown RBP6.69□□□□□ -1.34
SCN1A-222ENST00000642141 PRSS1P07477 247 aa6.69□□□□□ -1.34
SCN1A-222ENST00000642141 FOXA3P55318 350 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-222ENST00000642141 MIAQ16674 131 aa6.69□□□□□ -1.34
SCN1A-222ENST00000642141 TMEM97Q5BJF2 176 aa6.69□□□□□ -1.34
SCN1A-222ENST00000642141 CHAC1Q9BUX1 264 aa6.69□□□□□ -1.34
SCN1A-222ENST00000642141 RPP21Q9H633 154 aaKnown RBP6.69□□□□□ -1.34
SCN1A-222ENST00000642141 DMBT1Q9UGM3 2413 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-222ENST00000642141 IGLV4-60A0A075B6I1 120 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms