RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 HIST1H2BDP58876 126 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 HIST1H2BCP62807 126 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 HIST2H2BEQ16778 126 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-217ENST00000637988 PCP2Q8IVA1 136 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 MUSTN1Q8IVN3 82 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 HIST1H2BHQ93079 126 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 HIST1H2BNQ99877 126 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 HIST1H2BMQ99879 126 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 TRBV10-1A0A0K0K1A3 114 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 TRBV12-3P01733 135 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 WDR86Q86TI4 376 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 CEND1Q8N111 149 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 USP17L23D6RBM5 183 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 MAJINQ3KP22 176 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 SPTSSBQ8NFR3 76 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 C11orf52Q96A22 123 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 PROK2Q9HC23 129 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 CTSZQ9UBR2 303 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 A8MWP6 167 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 Q8N976 141 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 A4D1N5 150 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 ACYP1P07311 99 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 Q8N1Y9 231 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 MAP6D1Q9H9H5 199 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 REG3AQ06141 175 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 Q8N9W7 124 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 FXYD5Q96DB9 178 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 FAM110AQ9BQ89 295 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 IGKV1D-37A0A075B6S9 117 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 IGHV1-58A0A0C4DH39 117 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 IGLC7A0M8Q6 106 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 FAM222AQ5U5X8 452 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 PPDPFLQ8WWR9 84 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 CYTL1Q9NRR1 136 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 ADAMTS20P59510 1910 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 PRYO14603 147 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 MED14OSP0DP75 135 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 DIAPH2-AS1Q14236 149 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 TDRG1Q3Y452 100 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 GPR179Q6PRD1 2367 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 NOTCH2Q04721 2471 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 MYO18BQ8IUG5 2567 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 IGLV11-55A0A075B6I3 123 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 LRP4O75096 1905 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 HIVEP3Q5T1R4 2406 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 SMIM20Q8N5G0 67 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 DOPEY1Q5JWR5 2465 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 F8W1H4 67 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 LGALS9BQ3B8N2 356 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 LGALS9CQ6DKI2 356 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 FAM231DQ6ZW35 169 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 LINC00269Q8N2A0 174 aa4.72□□□□□ -1.65
SCN1A-217ENST00000637988 RSPO3Q9BXY4 272 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-217ENST00000637988 NHLRC4P0CG21 123 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-217ENST00000637988 IGLV5-52A0A0A0MRZ9 124 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 Q8NA96 180 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 MRPL35Q9NZE8 188 aaKnown RBP4.71□□□□□ -1.66
SCN1A-217ENST00000637988 MIAQ16674 131 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 AGPAT4-IT1Q9H0P7 198 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 U3KQK5 164 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 A6NDX4 124 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 LGALS9O00182 355 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 IGF1P05019 195 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 ZFYVE26Q68DK2 2539 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 LYPD6Q86Y78 171 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 ANKHD1Q8IWZ3 2542 aaKnown RBP4.71□□□□□ -1.66
SCN1A-217ENST00000637988 A0A0G2JRQ6 117 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 C9orf85Q96MD7 179 aa4.71□□□□□ -1.66
SCN1A-217ENST00000637988 SERP1Q9Y6X1 66 aa4.7□□□□□ -1.66
SCN1A-217ENST00000637988 POU2AF1Q16633 256 aa4.7□□□□□ -1.66
SCN1A-217ENST00000637988 HIST1H2BLQ99880 126 aa4.7□□□□□ -1.66
SCN1A-217ENST00000637988 C3orf79P0CE67 100 aa4.7□□□□□ -1.66
SCN1A-217ENST00000637988 CRYBA4P53673 196 aa4.7□□□□□ -1.66
SCN1A-217ENST00000637988 MRPL52Q86TS9 123 aaKnown RBP4.7□□□□□ -1.66
SCN1A-217ENST00000637988 FAM19A5Q7Z5A7 132 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-217ENST00000637988 TMEM61Q8N0U2 210 aa4.7□□□□□ -1.66
SCN1A-217ENST00000637988 TRBV6-1A0A0K0K1D8 114 aa4.7□□□□□ -1.66
SCN1A-217ENST00000637988 LINC00337Q8N6G1 96 aa4.69□□□□□ -1.66
SCN1A-217ENST00000637988 LOC107984640A0A0U1RRK4 108 aa4.69□□□□□ -1.66
SCN1A-217ENST00000637988 PCP4P48539 62 aa4.69□□□□□ -1.66
SCN1A-217ENST00000637988 CACNA1AO00555 2505 aa4.69□□□□□ -1.66
SCN1A-217ENST00000637988 Q6ZRM9 215 aa4.69□□□□□ -1.66
SCN1A-217ENST00000637988 PSMB8P28062 276 aa4.69□□□□□ -1.66
SCN1A-217ENST00000637988 ARTNQ5T4W7 220 aa4.69□□□□□ -1.66
SCN1A-217ENST00000637988 RPL39LQ96EH5 51 aaKnown RBP4.69□□□□□ -1.66
SCN1A-217ENST00000637988 ODF3Q96PU9 254 aa4.69□□□□□ -1.66
SCN1A-217ENST00000637988 SIRPDQ9H106 197 aa4.69□□□□□ -1.66
SCN1A-217ENST00000637988 ZNF503-AS2A6NEH8 195 aa4.68□□□□□ -1.66
SCN1A-217ENST00000637988 I3L2K1 104 aa4.68□□□□□ -1.66
SCN1A-217ENST00000637988 NPYP01303 97 aa4.68□□□□□ -1.66
SCN1A-217ENST00000637988 KPRPQ5T749 579 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-217ENST00000637988 RPL28P46779 137 aaKnown RBP4.68□□□□□ -1.66
SCN1A-217ENST00000637988 C18orf32Q8TCD1 76 aa4.68□□□□□ -1.66
SCN1A-217ENST00000637988 ZFAND2AQ8N6M9 145 aa4.68□□□□□ -1.66
SCN1A-217ENST00000637988 A0A096LNI7 61 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 K7EIM0 57 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 NDUFC2O95298 119 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 CHCHD10Q8WYQ3 142 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-217ENST00000637988 A0A0J9YWU9 116 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms