RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 MPV17L2Q567V2 206 aa12.5□□□□□ -0.41
CLN3-262ENST00000637699 FAM162BQ5T6X4 162 aa12.5□□□□□ -0.41
CLN3-262ENST00000637699 hCG_2014768A0A024R1R8 64 aa12.49□□□□□ -0.41
CLN3-262ENST00000637699 H2AFB1P0C5Y9 115 aa12.49□□□□□ -0.41
CLN3-262ENST00000637699 AKR1C3P42330 323 aa12.49□□□□□ -0.41
CLN3-262ENST00000637699 EIF5AP63241 154 aaKnown RBP12.49□□□□□ -0.41
CLN3-262ENST00000637699 ZNF674Q2M3X9 581 aa12.49□□□□□ -0.41
CLN3-262ENST00000637699 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.49□□□□□ -0.41
CLN3-262ENST00000637699 SCO2A0A1W2PP80 73 aa12.47□□□□□ -0.41
CLN3-262ENST00000637699 PANO1I0J062 215 aa12.47□□□□□ -0.41
CLN3-262ENST00000637699 MT1HL1P0DM35 61 aa12.47□□□□□ -0.41
CLN3-262ENST00000637699 DGAT2L7PQ6IED9 249 aa12.47□□□□□ -0.41
CLN3-262ENST00000637699 ZFP82Q8N141 532 aa12.47□□□□□ -0.41
CLN3-262ENST00000637699 C9orf163Q8N9P6 203 aa12.47□□□□□ -0.41
CLN3-262ENST00000637699 CCL20P78556 96 aa12.46□□□□□ -0.41
CLN3-262ENST00000637699 LINC01559Q495D7 138 aa12.46□□□□□ -0.41
CLN3-262ENST00000637699 TCTE3Q8IZS6 198 aa12.46□□□□□ -0.41
CLN3-262ENST00000637699 OR10G8Q8NGN5 311 aa12.46□□□□□ -0.41
CLN3-262ENST00000637699 CHCHD5Q9BSY4 110 aa12.46□□□□□ -0.41
CLN3-262ENST00000637699 ZNF56Q15929 161 aa12.44□□□□□ -0.42
CLN3-262ENST00000637699 MIAQ16674 131 aa12.44□□□□□ -0.42
CLN3-262ENST00000637699 CLPSL2Q6UWE3 100 aa12.44□□□□□ -0.42
CLN3-262ENST00000637699 NEXN-AS1Q8NBZ9 246 aa12.44□□□□□ -0.42
CLN3-262ENST00000637699 MLST8Q9BVC4 326 aa12.44□□□□□ -0.42
CLN3-262ENST00000637699 RNF213Q63HN8 5207 aa12.43□□□□□ -0.42
CLN3-262ENST00000637699 S100A9P06702 114 aaKnown RBP12.43□□□□□ -0.42
CLN3-262ENST00000637699 RAB4BP61018 213 aa12.43□□□□□ -0.42
CLN3-262ENST00000637699 SDIM1Q6ZPB5 146 aa12.43□□□□□ -0.42
CLN3-262ENST00000637699 TRAV1-1A0A0B4J248 108 aa12.42□□□□□ -0.42
CLN3-262ENST00000637699 BAGE2Q86Y30 109 aa12.42□□□□□ -0.42
CLN3-262ENST00000637699 GNG13Q9P2W3 67 aa12.42□□□□□ -0.42
CLN3-262ENST00000637699 RAB5CP51148 216 aa12.41□□□□□ -0.42
CLN3-262ENST00000637699 PKIAP61925 76 aa12.41□□□□□ -0.42
CLN3-262ENST00000637699 RPL19P84098 196 aaKnown RBP12.41□□□□□ -0.42
CLN3-262ENST00000637699 Q6ZRU5 148 aa12.41□□□□□ -0.42
CLN3-262ENST00000637699 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.41□□□□□ -0.42
CLN3-262ENST00000637699 LRP2P98164 4655 aa12.4□□□□□ -0.42
CLN3-262ENST00000637699 SULT1A2P50226 295 aa12.4□□□□□ -0.42
CLN3-262ENST00000637699 PRR27Q6MZM9 219 aa12.4□□□□□ -0.42
CLN3-262ENST00000637699 KRTAP26-1Q6PEX3 210 aa12.4□□□□□ -0.42
CLN3-262ENST00000637699 NTM-AS1Q6ZSK4 140 aa12.4□□□□□ -0.42
CLN3-262ENST00000637699 LINC00269Q8N2A0 174 aa12.4□□□□□ -0.42
CLN3-262ENST00000637699 DERL1Q9BUN8 251 aa12.4□□□□□ -0.42
CLN3-262ENST00000637699 MANBALQ9NQG1 85 aa12.4□□□□□ -0.42
CLN3-262ENST00000637699 PRR34Q9NV39 138 aa12.4□□□□□ -0.42
CLN3-262ENST00000637699 TNXBP22105 4242 aa12.4□□□□□ -0.42
CLN3-262ENST00000637699 RPL35P42766 123 aaKnown RBP12.39□□□□□ -0.43
CLN3-262ENST00000637699 RBX1P62877 108 aa12.39□□□□□ -0.43
CLN3-262ENST00000637699 GAGE6Q13070 117 aa12.39□□□□□ -0.43
CLN3-262ENST00000637699 EIF5AL1Q6IS14 154 aaKnown RBP12.39□□□□□ -0.43
CLN3-262ENST00000637699 OR10AG1Q8NH19 301 aa12.39□□□□□ -0.43
CLN3-262ENST00000637699 DPH3Q96FX2 82 aa12.39□□□□□ -0.43
CLN3-262ENST00000637699 F5H697 171 aa12.38□□□□□ -0.43
CLN3-262ENST00000637699 C11orf52Q96A22 123 aa12.38□□□□□ -0.43
CLN3-262ENST00000637699 MUC21A0A0G2JKD1 596 aa12.37□□□□□ -0.43
CLN3-262ENST00000637699 MUC21A0A140T8X8 626 aa12.37□□□□□ -0.43
CLN3-262ENST00000637699 SSTP61278 116 aa12.37□□□□□ -0.43
CLN3-262ENST00000637699 SLC51BQ86UW2 128 aa12.37□□□□□ -0.43
CLN3-262ENST00000637699 CLRN3Q8NCR9 226 aa12.37□□□□□ -0.43
CLN3-262ENST00000637699 IGLV10-54A0A075B6I4 117 aa12.36□□□□□ -0.43
CLN3-262ENST00000637699 TMEM97Q5BJF2 176 aa12.36□□□□□ -0.43
CLN3-262ENST00000637699 hDV102S1A0JD36 115 aa12.35□□□□□ -0.43
CLN3-262ENST00000637699 CXCL1P09341 107 aa12.35□□□□□ -0.43
CLN3-262ENST00000637699 AKAP14Q86UN6 197 aa12.35□□□□□ -0.43
CLN3-262ENST00000637699 TRBV25-1A0A075B6N4 114 aa12.34□□□□□ -0.43
CLN3-262ENST00000637699 RAB19A4D1S5 217 aa12.34□□□□□ -0.43
CLN3-262ENST00000637699 TEX46H3BTG2 121 aa12.34□□□□□ -0.43
CLN3-262ENST00000637699 CHTF8P0CG12 524 aa12.34□□□□□ -0.43
CLN3-262ENST00000637699 CIRBPQ14011 172 aaKnown RBP12.34□□□□□ -0.43
CLN3-262ENST00000637699 CENPWQ5EE01 88 aa12.34□□□□□ -0.43
CLN3-262ENST00000637699 SPANXN1Q5VSR9 72 aa12.34□□□□□ -0.43
CLN3-262ENST00000637699 C9orf62Q8N4C0 152 aa12.34□□□□□ -0.43
CLN3-262ENST00000637699 SSBP4Q9BWG4 385 aaPredicted RBP12.34□□□□□ -0.43
CLN3-262ENST00000637699 VAX2Q9UIW0 290 aa12.34□□□□□ -0.43
CLN3-262ENST00000637699 CNBPP62633 177 aaKnown RBP12.33□□□□□ -0.44
CLN3-262ENST00000637699 MEF2BQ02080 365 aaPredicted RBP12.33□□□□□ -0.44
CLN3-262ENST00000637699 REG3AQ06141 175 aa12.33□□□□□ -0.44
CLN3-262ENST00000637699 IGHV3-64A0A075B6Q5 118 aa12.32□□□□□ -0.44
CLN3-262ENST00000637699 A0A087WYN8 130 aa12.32□□□□□ -0.44
CLN3-262ENST00000637699 SNAI2O43623 268 aa12.32□□□□□ -0.44
CLN3-262ENST00000637699 OR5AL1P0C617 328 aa12.31□□□□□ -0.44
CLN3-262ENST00000637699 DPH3P1Q9H4G8 78 aa12.31□□□□□ -0.44
CLN3-262ENST00000637699 AP5S1Q9NUS5 200 aa12.31□□□□□ -0.44
CLN3-262ENST00000637699 IGHV1-24A0A0C4DH33 117 aa12.3□□□□□ -0.44
CLN3-262ENST00000637699 PDE6DO43924 150 aa12.3□□□□□ -0.44
CLN3-262ENST00000637699 SLPIP03973 132 aa12.3□□□□□ -0.44
CLN3-262ENST00000637699 SMIM17P0DL12 118 aa12.3□□□□□ -0.44
CLN3-262ENST00000637699 GZMBP10144 247 aa12.3□□□□□ -0.44
CLN3-262ENST00000637699 BCL2P10415 239 aa12.3□□□□□ -0.44
CLN3-262ENST00000637699 IQCJQ1A5X6 159 aa12.3□□□□□ -0.44
CLN3-262ENST00000637699 RNF185Q96GF1 192 aa12.3□□□□□ -0.44
CLN3-262ENST00000637699 MED9Q9NWA0 146 aa12.3□□□□□ -0.44
CLN3-262ENST00000637699 KIF25-AS1Q9Y6Z4 181 aa12.3□□□□□ -0.44
CLN3-262ENST00000637699 TRBV20OR9-2A0A075B6H5 130 aa12.29□□□□□ -0.44
CLN3-262ENST00000637699 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.29□□□□□ -0.44
CLN3-262ENST00000637699 IFNA1P01562 189 aa12.29□□□□□ -0.44
CLN3-262ENST00000637699 GNG4P50150 75 aa12.29□□□□□ -0.44
CLN3-262ENST00000637699 C20orf203Q8NBC4 194 aa12.29□□□□□ -0.44
CLN3-262ENST00000637699 C19orf71A6NCJ1 209 aa12.28□□□□□ -0.44
CLN3-262ENST00000637699 PHOX2AO14813 284 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms