RNA–Protein interactions for RNA: ENST00000637223.1

CLN6-218, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 652 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-218ENST00000637223 GAGE1Q13065 139 aa11.89□□□□□ -0.51
CLN6-218ENST00000637223 GAGE4Q13068 117 aa11.89□□□□□ -0.51
CLN6-218ENST00000637223 GAGE5Q13069 117 aa11.89□□□□□ -0.51
CLN6-218ENST00000637223 GAGE13Q4V321 117 aa11.89□□□□□ -0.51
CLN6-218ENST00000637223 NEGR1Q7Z3B1 354 aa11.89□□□□□ -0.51
CLN6-218ENST00000637223 NUP35Q8NFH5 326 aa11.89□□□□□ -0.51
CLN6-218ENST00000637223 BORCS7Q96B45 105 aa11.89□□□□□ -0.51
CLN6-218ENST00000637223 NACAE9PAV3 2078 aa11.88□□□□□ -0.51
CLN6-218ENST00000637223 A0A1B0GW15 77 aa11.88□□□□□ -0.51
CLN6-218ENST00000637223 LINC00315P59091 139 aa11.88□□□□□ -0.51
CLN6-218ENST00000637223 RAB4BP61018 213 aa11.88□□□□□ -0.51
CLN6-218ENST00000637223 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.88□□□□□ -0.51
CLN6-218ENST00000637223 A0A1B0GUT8 65 aa11.87□□□□□ -0.51
CLN6-218ENST00000637223 MT-ND6P03923 174 aa11.87□□□□□ -0.51
CLN6-218ENST00000637223 DPH3P1Q9H4G8 78 aa11.87□□□□□ -0.51
CLN6-218ENST00000637223 S100A8P05109 93 aa11.86□□□□□ -0.51
CLN6-218ENST00000637223 LYPD5Q6UWN5 251 aa11.86□□□□□ -0.51
CLN6-218ENST00000637223 RPS10P46783 165 aaKnown RBP11.85□□□□□ -0.51
CLN6-218ENST00000637223 SUMO4Q6EEV6 95 aa11.85□□□□□ -0.51
CLN6-218ENST00000637223 SMIM15Q7Z3B0 74 aa11.85□□□□□ -0.51
CLN6-218ENST00000637223 GNB1LQ9BYB4 327 aa11.85□□□□□ -0.51
CLN6-218ENST00000637223 FRAS1Q86XX4 4008 aa11.84□□□□□ -0.51
CLN6-218ENST00000637223 TRBV10-1A0A0K0K1A3 114 aa11.84□□□□□ -0.51
CLN6-218ENST00000637223 LINC00694P0DN24 101 aa11.84□□□□□ -0.51
CLN6-218ENST00000637223 RIGQ13278 110 aa11.84□□□□□ -0.51
CLN6-218ENST00000637223 SH2D6Q7Z4S9 175 aa11.84□□□□□ -0.51
CLN6-218ENST00000637223 ZNRF2Q8NHG8 242 aa11.84□□□□□ -0.51
CLN6-218ENST00000637223 MRPS16Q9Y3D3 137 aaKnown RBP11.84□□□□□ -0.51
CLN6-218ENST00000637223 IGLV2-18A0A075B6J9 118 aa11.83□□□□□ -0.52
CLN6-218ENST00000637223 C1orf196B1AJZ1 125 aa11.83□□□□□ -0.52
CLN6-218ENST00000637223 NEXN-AS1Q8NBZ9 246 aa11.83□□□□□ -0.52
CLN6-218ENST00000637223 ATP6V0E2Q8NHE4 81 aa11.83□□□□□ -0.52
CLN6-218ENST00000637223 KMT2AQ03164 3969 aa11.83□□□□□ -0.52
CLN6-218ENST00000637223 A0A1B0GXF2 115 aa11.82□□□□□ -0.52
CLN6-218ENST00000637223 HLA-DQA1P01909 254 aa11.82□□□□□ -0.52
CLN6-218ENST00000637223 RPL36AP83881 106 aaKnown RBP11.82□□□□□ -0.52
CLN6-218ENST00000637223 RPL36ALQ969Q0 106 aaKnown RBP11.82□□□□□ -0.52
CLN6-218ENST00000637223 TRAV26-2A0A0B4J265 109 aa11.81□□□□□ -0.52
CLN6-218ENST00000637223 M0QY20 66 aa11.81□□□□□ -0.52
CLN6-218ENST00000637223 RAB5BP61020 215 aa11.81□□□□□ -0.52
CLN6-218ENST00000637223 HBBP68871 147 aa11.81□□□□□ -0.52
CLN6-218ENST00000637223 MRPL54Q6P161 138 aaKnown RBP11.81□□□□□ -0.52
CLN6-218ENST00000637223 GATD1Q8NB37 220 aa11.81□□□□□ -0.52
CLN6-218ENST00000637223 UPK3BQ9BT76 320 aa11.81□□□□□ -0.52
CLN6-218ENST00000637223 DNAH6Q9C0G6 4158 aa11.81□□□□□ -0.52
CLN6-218ENST00000637223 TRBV7-3A0A075B6L6 115 aa11.8□□□□□ -0.52
CLN6-218ENST00000637223 H7C1H1 209 aa11.8□□□□□ -0.52
CLN6-218ENST00000637223 M0R2N4 97 aa11.8□□□□□ -0.52
CLN6-218ENST00000637223 CAMPP49913 170 aa11.8□□□□□ -0.52
CLN6-218ENST00000637223 TMEM191AQ9H0A3 160 aa11.8□□□□□ -0.52
CLN6-218ENST00000637223 GTSF1LQ9H1H1 148 aa11.8□□□□□ -0.52
CLN6-218ENST00000637223 RYR1P21817 5038 aa11.8□□□□□ -0.52
CLN6-218ENST00000637223 TIRAPP58753 221 aa11.79□□□□□ -0.52
CLN6-218ENST00000637223 UBE2D3P61077 147 aa11.79□□□□□ -0.52
CLN6-218ENST00000637223 UBE2D2P62837 147 aa11.79□□□□□ -0.52
CLN6-218ENST00000637223 Q9H8V8 135 aa11.79□□□□□ -0.52
CLN6-218ENST00000637223 TRAPPC1Q9Y5R8 145 aa11.79□□□□□ -0.52
CLN6-218ENST00000637223 IGHV3-38A0A0C4DH36 116 aa11.78□□□□□ -0.52
CLN6-218ENST00000637223 TMEM136Q6ZRR5 245 aa11.78□□□□□ -0.52
CLN6-218ENST00000637223 AMN1Q8IY45 258 aa11.78□□□□□ -0.52
CLN6-218ENST00000637223 PHOX2AO14813 284 aa11.77□□□□□ -0.53
CLN6-218ENST00000637223 TRGC2P03986 189 aa11.77□□□□□ -0.53
CLN6-218ENST00000637223 OR10J3Q5JRS4 329 aa11.77□□□□□ -0.53
CLN6-218ENST00000637223 WFDC10BQ8IUB3 73 aa11.77□□□□□ -0.53
CLN6-218ENST00000637223 RNF185Q96GF1 192 aa11.77□□□□□ -0.53
CLN6-218ENST00000637223 TNFRSF18Q9Y5U5 241 aa11.77□□□□□ -0.53
CLN6-218ENST00000637223 SIVA1O15304 175 aa11.76□□□□□ -0.53
CLN6-218ENST00000637223 RAB4AP20338 218 aa11.76□□□□□ -0.53
CLN6-218ENST00000637223 LELP1Q5T871 98 aa11.76□□□□□ -0.53
CLN6-218ENST00000637223 RPL39LQ96EH5 51 aaKnown RBP11.76□□□□□ -0.53
CLN6-218ENST00000637223 DNAJC30Q96LL9 226 aa11.76□□□□□ -0.53
CLN6-218ENST00000637223 NIT2Q9NQR4 276 aa11.76□□□□□ -0.53
CLN6-218ENST00000637223 KIAA1109Q2LD37 5005 aa11.76□□□□□ -0.53
CLN6-218ENST00000637223 TRAV8-6A0A0B4J262 113 aa11.74□□□□□ -0.53
CLN6-218ENST00000637223 NBDYA0A0U1RRE5 68 aa11.74□□□□□ -0.53
CLN6-218ENST00000637223 GAS8-AS1O95177 125 aa11.74□□□□□ -0.53
CLN6-218ENST00000637223 FABP9Q0Z7S8 132 aa11.74□□□□□ -0.53
CLN6-218ENST00000637223 MRPL18Q9H0U6 180 aaKnown RBP11.74□□□□□ -0.53
CLN6-218ENST00000637223 SMKR1H3BMG3 65 aa11.73□□□□□ -0.53
CLN6-218ENST00000637223 NCR2O95944 276 aa11.73□□□□□ -0.53
CLN6-218ENST00000637223 APCSP02743 223 aa11.73□□□□□ -0.53
CLN6-218ENST00000637223 FAM104BQ5XKR9 115 aa11.73□□□□□ -0.53
CLN6-218ENST00000637223 DAZ4Q86SG3 579 aaKnown RBP11.73□□□□□ -0.53
CLN6-218ENST00000637223 FRZBQ92765 325 aa11.73□□□□□ -0.53
CLN6-218ENST00000637223 DAZ3Q9NR90 486 aaKnown RBP11.73□□□□□ -0.53
CLN6-218ENST00000637223 MRPL51Q4U2R6 128 aaKnown RBP11.72□□□□□ -0.53
CLN6-218ENST00000637223 Q6ZR54 194 aa11.72□□□□□ -0.53
CLN6-218ENST00000637223 MRAP2Q96G30 205 aa11.72□□□□□ -0.53
CLN6-218ENST00000637223 KRTAP1-5Q9BYS1 174 aa11.72□□□□□ -0.53
CLN6-218ENST00000637223 TMA7Q9Y2S6 64 aaKnown RBP11.72□□□□□ -0.53
CLN6-218ENST00000637223 HIST1H2BKO60814 126 aa11.71□□□□□ -0.53
CLN6-218ENST00000637223 HIST1H2BJP06899 126 aa11.71□□□□□ -0.53
CLN6-218ENST00000637223 HIST1H2BOP23527 126 aa11.71□□□□□ -0.53
CLN6-218ENST00000637223 HIST1H2BBP33778 126 aa11.71□□□□□ -0.53
CLN6-218ENST00000637223 HIST1H2BDP58876 126 aa11.71□□□□□ -0.53
CLN6-218ENST00000637223 HIST1H2BCP62807 126 aa11.71□□□□□ -0.53
CLN6-218ENST00000637223 HIST2H2BEQ16778 126 aa11.71□□□□□ -0.53
CLN6-218ENST00000637223 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.71□□□□□ -0.53
CLN6-218ENST00000637223 DEFB104AQ8WTQ1 72 aa11.71□□□□□ -0.53
CLN6-218ENST00000637223 HIST1H2BHQ93079 126 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms