RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 TRBV7-6A0A0J9YX20 115 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 CXorf51AA0A1B0GTR3 108 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 ZNF815PA8K554 130 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 PPP5D1E7EU14 171 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 M0QZK8 103 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 GCHFRP30047 84 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 PI4KAP42356 2102 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 PCBD1P61457 104 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 Q6ZRX8 168 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 CYP2G1PQ6ZSU1 146 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 Q96NJ1 140 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 MYH1P12882 1939 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 C5orf42Q9H799 3197 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 PRUNE2Q8WUY3 3088 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 ACYP2P14621 99 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 SERPINB1P30740 379 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 AKR1D1P51857 326 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 CRYBA4P53673 196 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 SLC48A1Q6P1K1 146 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 DCUN1D2Q6PH85 259 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 BRK1Q8WUW1 75 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 CHMP6Q96FZ7 201 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 CCDC32Q9BV29 185 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 CNFNQ9BYD5 112 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 STOML2Q9UJZ1 356 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 PPRC1Q5VV67 1664 aaKnown RBP-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 MYH3P11055 1940 aa-0.79□□□□□ -2.54
SCN1A-208ENST00000625916 NUP210Q8TEM1 1887 aaPredicted RBP-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 KIDINS220Q9ULH0 1771 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 TRBV7-1A0A0A6YYK4 115 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 A0A0D9SFI3 127 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 LOC107984640A0A0U1RRK4 108 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 PFDN1O60925 122 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 SPRR1AP35321 89 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 KLK9Q2XQG4 91 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 HRCT1Q6UXD1 115 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 Q8IZM0 81 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 C4orf33Q8N1A6 199 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 MT1MQ8N339 61 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 CBLN4Q9NTU7 201 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 TAS2R8Q9NYW2 309 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 MED31Q9Y3C7 131 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 AKAP11Q9UKA4 1901 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 A2MP01023 1474 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 SPTA1P02549 2419 aa-0.8□□□□□ -2.54
SCN1A-208ENST00000625916 WDR97A6NE52 1622 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 MKI67P46013 3256 aaKnown RBP-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 TMEM14DPA8MWL7 114 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 UQCRQO14949 82 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 FAM107AO95990 144 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 MT2AP02795 61 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 CCL3L1P16619 93 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 SSBP1Q04837 148 aaKnown RBP-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 FAM74A4Q5TZK3 123 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 OR2T2Q6IF00 324 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 SLC25A26Q70HW3 274 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 STX12Q86Y82 276 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 NDUFAF1Q9Y375 327 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 VCANP13611 3396 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 VPS13DQ5THJ4 4388 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 USF3Q68DE3 2245 aa-0.81□□□□□ -2.54
SCN1A-208ENST00000625916 SPENQ96T58 3664 aaKnown RBP-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 TRRAPQ9Y4A5 3859 aa-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 PCNTO95613 3336 aa-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 CCDC171Q6TFL3 1326 aa-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 SMR3BP02814 79 aaPredicted RBP-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 MT1FP04733 61 aa-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 HIST1H1BP16401 226 aaKnown RBP-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 PLGLB1Q02325 96 aa-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 INSL4Q14641 139 aa-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 OR8B8Q15620 311 aa-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 C3orf33Q6P1S2 294 aa-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 SCP2D1Q9UJQ7 156 aa-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 V9GYV3 84 aa-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 MYO7BQ6PIF6 2116 aa-0.82□□□□□ -2.54
SCN1A-208ENST00000625916 EIF3AQ14152 1382 aaKnown RBP-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 CMYA5Q8N3K9 4069 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 CFAP47Q6ZTR5 3102 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 TRAV2A0A0B4J234 112 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 MT1AP04731 61 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 SPINK8P0C7L1 97 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 RPL22P35268 128 aaKnown RBP-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 NDUFA11Q86Y39 141 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 COX7B2Q8TF08 81 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 BATF3Q9NR55 127 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 METTL1Q9UBP6 276 aaKnown RBP-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 TRAPPC2LQ9UL33 140 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 ZCCHC11Q5TAX3 1644 aaKnown RBP-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 NBASA2RRP1 2371 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 CEP350Q5VT06 3117 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 DNAH11Q96DT5 4516 aa-0.83□□□□□ -2.54
SCN1A-208ENST00000625916 ATMQ13315 3056 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 DNAH8Q96JB1 4490 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 SMG1Q96Q15 3661 aaKnown RBP-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 TRAV22A0A0B4J277 110 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 A0A1B0GW64 132 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 E7EQ34 232 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 DEGS1O15121 323 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 SLC25A5P05141 298 aaKnown RBP-0.84□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms