RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.87□□□□□ -0.83
LINC00643-206ENST00000623985 KRTAP4-5Q9BYR2 181 aa9.87□□□□□ -0.83
LINC00643-206ENST00000623985 KIF25-AS1Q9Y6Z4 181 aa9.87□□□□□ -0.83
LINC00643-206ENST00000623985 A0A087WX48 190 aa9.86□□□□□ -0.83
LINC00643-206ENST00000623985 TRBV6-8A0A0A6YYG3 113 aa9.86□□□□□ -0.83
LINC00643-206ENST00000623985 RBFOX3A6NFN3 312 aa9.86□□□□□ -0.83
LINC00643-206ENST00000623985 F2Z2F3 143 aa9.86□□□□□ -0.83
LINC00643-206ENST00000623985 SSTP61278 116 aa9.86□□□□□ -0.83
LINC00643-206ENST00000623985 KCNIP4Q6PIL6 250 aa9.86□□□□□ -0.83
LINC00643-206ENST00000623985 COX11Q9Y6N1 276 aa9.86□□□□□ -0.83
LINC00643-206ENST00000623985 IGLV5-52A0A0A0MRZ9 124 aa9.85□□□□□ -0.83
LINC00643-206ENST00000623985 GCSHP23434 173 aa9.85□□□□□ -0.83
LINC00643-206ENST00000623985 ELOBQ15370 118 aa9.85□□□□□ -0.83
LINC00643-206ENST00000623985 LYPD6BQ8NI32 183 aa9.85□□□□□ -0.83
LINC00643-206ENST00000623985 RMI2Q96E14 147 aa9.85□□□□□ -0.83
LINC00643-206ENST00000623985 TMEM250H0YL14 139 aa9.84□□□□□ -0.83
LINC00643-206ENST00000623985 H7C1H1 209 aa9.84□□□□□ -0.83
LINC00643-206ENST00000623985 MGPP08493 103 aa9.84□□□□□ -0.83
LINC00643-206ENST00000623985 TRGC1P0CF51 173 aa9.84□□□□□ -0.83
LINC00643-206ENST00000623985 CTRLP40313 264 aa9.84□□□□□ -0.83
LINC00643-206ENST00000623985 KRTAP10-1P60331 282 aa9.84□□□□□ -0.83
LINC00643-206ENST00000623985 TMEM97Q5BJF2 176 aa9.84□□□□□ -0.83
LINC00643-206ENST00000623985 KLK12Q9UKR0 248 aa9.84□□□□□ -0.83
LINC00643-206ENST00000623985 A0A1B0GVG6 124 aa9.83□□□□□ -0.84
LINC00643-206ENST00000623985 K7EN84 100 aa9.83□□□□□ -0.84
LINC00643-206ENST00000623985 PKIAP61925 76 aa9.83□□□□□ -0.84
LINC00643-206ENST00000623985 NUDT10Q8NFP7 164 aa9.83□□□□□ -0.84
LINC00643-206ENST00000623985 NUDT11Q96G61 164 aa9.83□□□□□ -0.84
LINC00643-206ENST00000623985 RPP21Q9H633 154 aaKnown RBP9.83□□□□□ -0.84
LINC00643-206ENST00000623985 SUMO4Q6EEV6 95 aa9.82□□□□□ -0.84
LINC00643-206ENST00000623985 LYZL1Q6UWQ5 148 aa9.82□□□□□ -0.84
LINC00643-206ENST00000623985 DNAJC30Q96LL9 226 aa9.82□□□□□ -0.84
LINC00643-206ENST00000623985 CNFNQ9BYD5 112 aa9.82□□□□□ -0.84
LINC00643-206ENST00000623985 DPH3P1Q9H4G8 78 aa9.82□□□□□ -0.84
LINC00643-206ENST00000623985 M0QY20 66 aa9.81□□□□□ -0.84
LINC00643-206ENST00000623985 XGP55808 180 aa9.81□□□□□ -0.84
LINC00643-206ENST00000623985 Q0VG73 95 aa9.81□□□□□ -0.84
LINC00643-206ENST00000623985 WFDC2Q14508 124 aa9.81□□□□□ -0.84
LINC00643-206ENST00000623985 MPV17L2Q567V2 206 aa9.81□□□□□ -0.84
LINC00643-206ENST00000623985 WDR73Q6P4I2 378 aa9.81□□□□□ -0.84
LINC00643-206ENST00000623985 ATRAIDQ6UW56 229 aa9.81□□□□□ -0.84
LINC00643-206ENST00000623985 OCC1Q8TAD7 63 aa9.81□□□□□ -0.84
LINC00643-206ENST00000623985 UBE2WQ96B02 151 aa9.81□□□□□ -0.84
LINC00643-206ENST00000623985 RNASE7Q9H1E1 156 aaKnown RBP9.81□□□□□ -0.84
LINC00643-206ENST00000623985 TRBV25-1A0A075B6N4 114 aa9.8□□□□□ -0.84
LINC00643-206ENST00000623985 IGKV2D-24A0A075B6R9 120 aa9.8□□□□□ -0.84
LINC00643-206ENST00000623985 TMEM262E9PQX1 116 aa9.8□□□□□ -0.84
LINC00643-206ENST00000623985 NDUFS6O75380 124 aaKnown RBP9.8□□□□□ -0.84
LINC00643-206ENST00000623985 NTF3P20783 257 aa9.8□□□□□ -0.84
LINC00643-206ENST00000623985 NKX2-5P52952 324 aaPredicted RBP9.8□□□□□ -0.84
LINC00643-206ENST00000623985 NTM-AS1Q6ZSK4 140 aa9.8□□□□□ -0.84
LINC00643-206ENST00000623985 CHCHD5Q9BSY4 110 aa9.8□□□□□ -0.84
LINC00643-206ENST00000623985 TMEM70Q9BUB7 260 aa9.8□□□□□ -0.84
LINC00643-206ENST00000623985 LECT2O14960 151 aa9.79□□□□□ -0.84
LINC00643-206ENST00000623985 CRPP02741 224 aa9.79□□□□□ -0.84
LINC00643-206ENST00000623985 RASL11AQ6T310 242 aa9.79□□□□□ -0.84
LINC00643-206ENST00000623985 ANGP03950 147 aaKnown RBP9.78□□□□□ -0.84
LINC00643-206ENST00000623985 IQCJQ1A5X6 159 aa9.78□□□□□ -0.84
LINC00643-206ENST00000623985 FAM231DQ6ZW35 169 aa9.78□□□□□ -0.84
LINC00643-206ENST00000623985 C15orf54Q8N8G6 183 aa9.78□□□□□ -0.84
LINC00643-206ENST00000623985 BAALCQ8WXS3 180 aa9.78□□□□□ -0.84
LINC00643-206ENST00000623985 C1orf43Q9BWL3 253 aa9.78□□□□□ -0.84
LINC00643-206ENST00000623985 DNAH8Q96JB1 4490 aa9.77□□□□□ -0.85
LINC00643-206ENST00000623985 IGHV1-24A0A0C4DH33 117 aa9.77□□□□□ -0.85
LINC00643-206ENST00000623985 EPM2AB3EWF7 344 aa9.77□□□□□ -0.85
LINC00643-206ENST00000623985 CEBPGP53567 150 aa9.77□□□□□ -0.85
LINC00643-206ENST00000623985 TWIST1Q15672 202 aa9.77□□□□□ -0.85
LINC00643-206ENST00000623985 FAM210AQ96ND0 272 aa9.77□□□□□ -0.85
LINC00643-206ENST00000623985 EIF5A2Q9GZV4 153 aaKnown RBP9.77□□□□□ -0.85
LINC00643-206ENST00000623985 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.76□□□□□ -0.85
LINC00643-206ENST00000623985 GATCO43716 136 aaKnown RBP9.76□□□□□ -0.85
LINC00643-206ENST00000623985 CT83Q5H943 113 aa9.76□□□□□ -0.85
LINC00643-206ENST00000623985 ENHOQ6UWT2 76 aa9.76□□□□□ -0.85
LINC00643-206ENST00000623985 Q8N976 141 aa9.76□□□□□ -0.85
LINC00643-206ENST00000623985 GTSF1Q8WW33 167 aa9.76□□□□□ -0.85
LINC00643-206ENST00000623985 PGLYRP4Q96LB8 373 aa9.76□□□□□ -0.85
LINC00643-206ENST00000623985 SMIM7Q9BQ49 75 aa9.76□□□□□ -0.85
LINC00643-206ENST00000623985 NIT2Q9NQR4 276 aa9.76□□□□□ -0.85
LINC00643-206ENST00000623985 FAT1Q14517 4588 aa9.76□□□□□ -0.85
LINC00643-206ENST00000623985 A8MWL6 223 aa9.75□□□□□ -0.85
LINC00643-206ENST00000623985 MIAQ16674 131 aa9.75□□□□□ -0.85
LINC00643-206ENST00000623985 FRZBQ92765 325 aa9.75□□□□□ -0.85
LINC00643-206ENST00000623985 VPS13BQ7Z7G8 4022 aa9.74□□□□□ -0.85
LINC00643-206ENST00000623985 RBX1P62877 108 aa9.74□□□□□ -0.85
LINC00643-206ENST00000623985 GAGE6Q13070 117 aa9.74□□□□□ -0.85
LINC00643-206ENST00000623985 SMIM15Q7Z3B0 74 aa9.74□□□□□ -0.85
LINC00643-206ENST00000623985 LINC01551Q86U37 167 aa9.74□□□□□ -0.85
LINC00643-206ENST00000623985 PRR34Q9NV39 138 aa9.74□□□□□ -0.85
LINC00643-206ENST00000623985 C14orf177Q52M58 125 aa9.73□□□□□ -0.85
LINC00643-206ENST00000623985 Q5VSD8 79 aa9.73□□□□□ -0.85
LINC00643-206ENST00000623985 Q6ZSA8 131 aa9.73□□□□□ -0.85
LINC00643-206ENST00000623985 TMEM243Q9BU79 118 aa9.73□□□□□ -0.85
LINC00643-206ENST00000623985 ZNF727A8MUV8 499 aa9.72□□□□□ -0.85
LINC00643-206ENST00000623985 HLA-DQA1P01909 254 aa9.72□□□□□ -0.85
LINC00643-206ENST00000623985 SRP19P09132 144 aaKnown RBP9.72□□□□□ -0.85
LINC00643-206ENST00000623985 CLPSL2Q6UWE3 100 aa9.72□□□□□ -0.85
LINC00643-206ENST00000623985 GATD1Q8NB37 220 aa9.72□□□□□ -0.85
LINC00643-206ENST00000623985 TRAV26-2A0A0B4J265 109 aa9.71□□□□□ -0.86
LINC00643-206ENST00000623985 FOXA3P55318 350 aaPredicted RBP9.71□□□□□ -0.86
LINC00643-206ENST00000623985 HAMPP81172 84 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms