RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 HIST1H2BCP62807 126 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 KLF5Q13887 457 aaPredicted RBP3.37□□□□□ -1.87
VPS29-212ENST00000621131 HIST2H2BEQ16778 126 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.37□□□□□ -1.87
VPS29-212ENST00000621131 C10orf99Q6UWK7 81 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 OR8A1Q8NGG7 326 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 OR9G4Q8NGQ1 327 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 Q8TAT8 98 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 HIST1H2BHQ93079 126 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 PGLYRP4Q96LB8 373 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 HIST1H2BNQ99877 126 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 HIST1H2BMQ99879 126 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 TPPP3Q9BW30 176 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 MS4A6AQ9H2W1 248 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 TRAV8-2A0A0B4J237 113 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 TRAV25A0A0B4J276 109 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 TMEM213A2RRL7 107 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 C5orf52A6NGY3 159 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 F2Z2F3 143 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 SPINK4O60575 86 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 CA1P00915 261 aaPredicted RBP3.36□□□□□ -1.87
VPS29-212ENST00000621131 HLA-DMBP28068 263 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 TFPI2P48307 235 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 ERCC8Q13216 396 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 DEFB136Q30KP8 78 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 OR10J3Q5JRS4 329 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 PSMG4Q5JS54 123 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 TMEM136Q6ZRR5 245 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 BAGE3Q86Y29 109 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 FER1L6-AS1Q8NA97 138 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 NUP35Q8NFH5 326 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 LINC01006Q8NI28 216 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 KCNS1Q96KK3 526 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 ODF3Q96PU9 254 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 AGPAT4-IT1Q9H0P7 198 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 ESM1Q9NQ30 184 aa3.36□□□□□ -1.87
VPS29-212ENST00000621131 DYNC2H1Q8NCM8 4307 aaKnown RBP3.35□□□□□ -1.87
VPS29-212ENST00000621131 TMSB15BA0A087X1C1 80 aa3.35□□□□□ -1.87
VPS29-212ENST00000621131 ZNF688P0C7X2 276 aa3.35□□□□□ -1.87
VPS29-212ENST00000621131 CD28P10747 220 aa3.35□□□□□ -1.87
VPS29-212ENST00000621131 S100A4P26447 101 aaKnown RBP3.35□□□□□ -1.87
VPS29-212ENST00000621131 ASIPP42127 132 aa3.35□□□□□ -1.87
VPS29-212ENST00000621131 FOXA3P55318 350 aaPredicted RBP3.35□□□□□ -1.87
VPS29-212ENST00000621131 CACNG7P62955 275 aa3.35□□□□□ -1.87
VPS29-212ENST00000621131 SPANXN1Q5VSR9 72 aa3.35□□□□□ -1.87
VPS29-212ENST00000621131 FOXI2Q6ZQN5 318 aa3.35□□□□□ -1.87
VPS29-212ENST00000621131 NDUFA11Q86Y39 141 aa3.35□□□□□ -1.87
VPS29-212ENST00000621131 OR2K2Q8NGT1 345 aa3.35□□□□□ -1.87
VPS29-212ENST00000621131 DCANP1Q8TF63 244 aa3.35□□□□□ -1.87
VPS29-212ENST00000621131 SPAG8Q99932 426 aaPredicted RBP3.35□□□□□ -1.87
VPS29-212ENST00000621131 NAGKQ9UJ70 344 aa3.35□□□□□ -1.87
VPS29-212ENST00000621131 A0A1B0GXF2 115 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 C7orf71A4D174 169 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 SMIM6P0DI80 62 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 SRIP30626 198 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 RNASE4P34096 147 aaKnown RBP3.34□□□□□ -1.87
VPS29-212ENST00000621131 CTRLP40313 264 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 NUTF2P61970 127 aaKnown RBP3.34□□□□□ -1.87
VPS29-212ENST00000621131 Q0VG73 95 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 NSUN5P1Q3KNT7 163 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 LYZL1Q6UWQ5 148 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 FAM159AQ6UWV7 190 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 LINC00322Q6ZN03 302 aaPredicted RBP3.34□□□□□ -1.87
VPS29-212ENST00000621131 DLX4Q92988 240 aaPredicted RBP3.34□□□□□ -1.87
VPS29-212ENST00000621131 CITED2Q99967 270 aaPredicted RBP3.34□□□□□ -1.87
VPS29-212ENST00000621131 SAMD10Q9BYL1 202 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 GPR61Q9BZJ8 451 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 SIGLEC8Q9NYZ4 499 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 HYDINQ4G0P3 5121 aa3.34□□□□□ -1.87
VPS29-212ENST00000621131 RYR2Q92736 4967 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 A0A0J9YX75 114 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 GRIFINA4D1Z8 144 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 OR11H12B2RN74 326 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 HSBP1O75506 76 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 PPBPP02775 128 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 OR5AL1P0C617 328 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 ARMS2P0C7Q2 107 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 ZNF705DP0CH99 300 aaPredicted RBP3.33□□□□□ -1.88
VPS29-212ENST00000621131 ZNF705BP0CI00 300 aaPredicted RBP3.33□□□□□ -1.88
VPS29-212ENST00000621131 SMIM17P0DL12 118 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 GZMBP10144 247 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 PRB4P10163 310 aaPredicted RBP3.33□□□□□ -1.88
VPS29-212ENST00000621131 HLA-DRB4P13762 266 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 FABP4P15090 132 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 RAB4AP20338 218 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 PMCHP20382 165 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 CDKN1BP46527 198 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 ZNF80P51504 273 aaPredicted RBP3.33□□□□□ -1.88
VPS29-212ENST00000621131 DEFB114Q30KQ6 69 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 PDZD11Q5EBL8 140 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 COA6Q5JTJ3 125 aaKnown RBP3.33□□□□□ -1.88
VPS29-212ENST00000621131 STHQ8IWL8 128 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 HIST3H2BBQ8N257 126 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 PACRGQ96M98 296 aaPredicted RBP3.33□□□□□ -1.88
VPS29-212ENST00000621131 LAMTOR2Q9Y2Q5 125 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 PHLDA3Q9Y5J5 127 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 HLA-DRB4X5D2U9 266 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 COL7A1Q02388 2944 aa3.33□□□□□ -1.88
VPS29-212ENST00000621131 LOC102724200A0A096LPH7 203 aaPredicted RBP3.32□□□□□ -1.88
VPS29-212ENST00000621131 F6UB75 175 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms