RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 PFN2P35080 140 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 RNF152Q8N8N0 203 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 C15orf53Q8NAA6 179 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 ZNRF2Q8NHG8 242 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 C20orf78Q9BR46 151 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 SORL1Q92673 2214 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 TRACP01848 142 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 TEX48A0A1B0GUV7 120 aa10.56□□□□□ -0.72
CIITA-213ENST00000618327 C19orf71A6NCJ1 209 aa10.56□□□□□ -0.72
CIITA-213ENST00000618327 Q6ZS46 218 aa10.56□□□□□ -0.72
CIITA-213ENST00000618327 ANKRD29Q8N6D5 301 aa10.56□□□□□ -0.72
CIITA-213ENST00000618327 F5H768 121 aa10.56□□□□□ -0.72
CIITA-213ENST00000618327 U3KQE9 123 aa10.56□□□□□ -0.72
CIITA-213ENST00000618327 LGALS9O00182 355 aa10.55□□□□□ -0.72
CIITA-213ENST00000618327 MBD6Q96DN6 1003 aa10.55□□□□□ -0.72
CIITA-213ENST00000618327 PSMG3-AS1Q96PY0 264 aa10.55□□□□□ -0.72
CIITA-213ENST00000618327 NOP10Q9NPE3 64 aaKnown RBP10.55□□□□□ -0.72
CIITA-213ENST00000618327 A0A0J9YX75 114 aa10.55□□□□□ -0.72
CIITA-213ENST00000618327 IGLV2-8P01709 118 aa10.55□□□□□ -0.72
CIITA-213ENST00000618327 PSMB8P28062 276 aa10.55□□□□□ -0.72
CIITA-213ENST00000618327 ZNF702PQ9H963 129 aa10.55□□□□□ -0.72
CIITA-213ENST00000618327 KLF5Q13887 457 aaPredicted RBP10.55□□□□□ -0.72
CIITA-213ENST00000618327 A0A0C4DFX4 3053 aa10.55□□□□□ -0.72
CIITA-213ENST00000618327 CRYBA4P53673 196 aa10.55□□□□□ -0.72
CIITA-213ENST00000618327 CDK2AP2O75956 126 aa10.54□□□□□ -0.72
CIITA-213ENST00000618327 PCP2Q8IVA1 136 aa10.54□□□□□ -0.72
CIITA-213ENST00000618327 IGHV3-38A0A0C4DH36 116 aa10.54□□□□□ -0.72
CIITA-213ENST00000618327 LY6G6DO95868 133 aa10.54□□□□□ -0.72
CIITA-213ENST00000618327 GATA1P15976 413 aaPredicted RBP10.54□□□□□ -0.72
CIITA-213ENST00000618327 Q8N1Y9 231 aa10.53□□□□□ -0.72
CIITA-213ENST00000618327 SH2D6Q7Z4S9 175 aa10.53□□□□□ -0.72
CIITA-213ENST00000618327 TMEM126AQ9H061 195 aa10.53□□□□□ -0.72
CIITA-213ENST00000618327 ZNF493Q6ZR52 646 aa10.53□□□□□ -0.72
CIITA-213ENST00000618327 RNASE8Q8TDE3 154 aaKnown RBP10.53□□□□□ -0.72
CIITA-213ENST00000618327 MLST8Q9BVC4 326 aa10.53□□□□□ -0.72
CIITA-213ENST00000618327 CFC1BP0CG36 223 aa10.52□□□□□ -0.73
CIITA-213ENST00000618327 CFC1P0CG37 223 aa10.52□□□□□ -0.73
CIITA-213ENST00000618327 TDRG1Q3Y452 100 aa10.52□□□□□ -0.73
CIITA-213ENST00000618327 LINC00322Q6ZN03 302 aaPredicted RBP10.52□□□□□ -0.73
CIITA-213ENST00000618327 TRBV25-1A0A075B6N4 114 aa10.52□□□□□ -0.73
CIITA-213ENST00000618327 CTRLP40313 264 aa10.52□□□□□ -0.73
CIITA-213ENST00000618327 FRMD6-AS1P0C7T7 363 aa10.52□□□□□ -0.73
CIITA-213ENST00000618327 ZNF80P51504 273 aaPredicted RBP10.52□□□□□ -0.73
CIITA-213ENST00000618327 SMAD5-AS1Q9Y6J3 95 aa10.52□□□□□ -0.73
CIITA-213ENST00000618327 IGLV1-40P01703 118 aa10.51□□□□□ -0.73
CIITA-213ENST00000618327 SUMO4Q6EEV6 95 aa10.51□□□□□ -0.73
CIITA-213ENST00000618327 TRAV12-1A0A0B4J245 112 aa10.51□□□□□ -0.73
CIITA-213ENST00000618327 RPL32P62910 135 aaKnown RBP10.51□□□□□ -0.73
CIITA-213ENST00000618327 K7EQG2 157 aa10.51□□□□□ -0.73
CIITA-213ENST00000618327 NUPR1O60356 82 aa10.51□□□□□ -0.73
CIITA-213ENST00000618327 RBMY1FQ15415 496 aaKnown RBP10.51□□□□□ -0.73
CIITA-213ENST00000618327 PRSS29PA6NIE9 313 aa10.51□□□□□ -0.73
CIITA-213ENST00000618327 MAP6D1Q9H9H5 199 aa10.51□□□□□ -0.73
CIITA-213ENST00000618327 SS18L2Q9UHA2 77 aa10.51□□□□□ -0.73
CIITA-213ENST00000618327 NXPH4O95158 308 aa10.5□□□□□ -0.73
CIITA-213ENST00000618327 NDUFA11Q86Y39 141 aa10.5□□□□□ -0.73
CIITA-213ENST00000618327 SMIM20Q8N5G0 67 aa10.5□□□□□ -0.73
CIITA-213ENST00000618327 RS1O15537 224 aa10.5□□□□□ -0.73
CIITA-213ENST00000618327 MTORP42345 2549 aa10.5□□□□□ -0.73
CIITA-213ENST00000618327 INSL3P51460 131 aa10.49□□□□□ -0.73
CIITA-213ENST00000618327 RBM3P98179 157 aaKnown RBP10.49□□□□□ -0.73
CIITA-213ENST00000618327 MRAPQ8TCY5 172 aa10.49□□□□□ -0.73
CIITA-213ENST00000618327 TMEM243Q9BU79 118 aa10.49□□□□□ -0.73
CIITA-213ENST00000618327 SPANXCQ9NY87 97 aa10.49□□□□□ -0.73
CIITA-213ENST00000618327 TRIOO75962 3097 aa10.49□□□□□ -0.73
CIITA-213ENST00000618327 TRAV13-2A0A0B4J235 113 aa10.49□□□□□ -0.73
CIITA-213ENST00000618327 TINCRA0A1B0GVN0 87 aa10.49□□□□□ -0.73
CIITA-213ENST00000618327 CRLF1O75462 422 aa10.49□□□□□ -0.73
CIITA-213ENST00000618327 MED14OSP0DP75 135 aa10.49□□□□□ -0.73
CIITA-213ENST00000618327 DEFB114Q30KQ6 69 aa10.49□□□□□ -0.73
CIITA-213ENST00000618327 RPL39LQ96EH5 51 aaKnown RBP10.49□□□□□ -0.73
CIITA-213ENST00000618327 C16orf74Q96GX8 76 aa10.49□□□□□ -0.73
CIITA-213ENST00000618327 ANKRD39Q53RE8 183 aa10.48□□□□□ -0.73
CIITA-213ENST00000618327 C20orf173Q96LM9 149 aa10.48□□□□□ -0.73
CIITA-213ENST00000618327 RHOHQ15669 191 aa10.48□□□□□ -0.73
CIITA-213ENST00000618327 LINC01006Q8NI28 216 aa10.48□□□□□ -0.73
CIITA-213ENST00000618327 IGLL5B9A064 214 aa10.48□□□□□ -0.73
CIITA-213ENST00000618327 K7EMI3 77 aa10.48□□□□□ -0.73
CIITA-213ENST00000618327 BOD1L2Q8IYS8 172 aa10.48□□□□□ -0.73
CIITA-213ENST00000618327 PIFOQ8TCI5 191 aa10.48□□□□□ -0.73
CIITA-213ENST00000618327 HILS1P60008 231 aa10.47□□□□□ -0.73
CIITA-213ENST00000618327 SCRT2Q9NQ03 307 aa10.47□□□□□ -0.73
CIITA-213ENST00000618327 DSCR8Q96T75 97 aa10.47□□□□□ -0.73
CIITA-213ENST00000618327 FN1P02751 2386 aaKnown RBP10.47□□□□□ -0.73
CIITA-213ENST00000618327 UBE2DNLQ8IWF7 75 aa10.46□□□□□ -0.73
CIITA-213ENST00000618327 ANKRD17O75179 2603 aaKnown RBP10.46□□□□□ -0.74
CIITA-213ENST00000618327 MDFICQ9P1T7 246 aa10.46□□□□□ -0.74
CIITA-213ENST00000618327 ZNF292O60281 2723 aa10.46□□□□□ -0.74
CIITA-213ENST00000618327 ZNF561-AS1K7EIQ3 104 aa10.46□□□□□ -0.74
CIITA-213ENST00000618327 LINC01545Q5VT33 79 aa10.46□□□□□ -0.74
CIITA-213ENST00000618327 TMEM258P61165 79 aa10.45□□□□□ -0.74
CIITA-213ENST00000618327 HERVK_113P63121 156 aa10.45□□□□□ -0.74
CIITA-213ENST00000618327 HIST2H2BDQ6DRA6 164 aa10.45□□□□□ -0.74
CIITA-213ENST00000618327 LINC00173Q6ZV60 143 aa10.45□□□□□ -0.74
CIITA-213ENST00000618327 ODF3Q96PU9 254 aa10.45□□□□□ -0.74
CIITA-213ENST00000618327 A0A1B0GXF2 115 aa10.45□□□□□ -0.74
CIITA-213ENST00000618327 WFDC2Q14508 124 aa10.45□□□□□ -0.74
CIITA-213ENST00000618327 BAALC-AS2P0C853 105 aa10.44□□□□□ -0.74
CIITA-213ENST00000618327 CRIP2P52943 208 aaPredicted RBP10.44□□□□□ -0.74
CIITA-213ENST00000618327 TEN1Q86WV5 123 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms