RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CENPWQ5EE01 88 aa12.6□□□□□ -0.39
CCDC28A-203ENST00000617445 ATRAIDQ6UW56 229 aa12.6□□□□□ -0.39
CCDC28A-203ENST00000617445 UBE2WQ96B02 151 aa12.6□□□□□ -0.39
CCDC28A-203ENST00000617445 IGKV2D-24A0A075B6R9 120 aa12.59□□□□□ -0.39
CCDC28A-203ENST00000617445 XKRY2A2RUG3 117 aa12.59□□□□□ -0.39
CCDC28A-203ENST00000617445 BAALCQ8WXS3 180 aa12.59□□□□□ -0.39
CCDC28A-203ENST00000617445 VAX2Q9UIW0 290 aa12.59□□□□□ -0.39
CCDC28A-203ENST00000617445 KIF25-AS1Q9Y6Z4 181 aa12.59□□□□□ -0.39
CCDC28A-203ENST00000617445 MUC21A0A0G2JKD1 596 aa12.58□□□□□ -0.4
CCDC28A-203ENST00000617445 MUC21A0A140T8X8 626 aa12.58□□□□□ -0.4
CCDC28A-203ENST00000617445 A0A1B0GVG6 124 aa12.58□□□□□ -0.4
CCDC28A-203ENST00000617445 SMR3BP02814 79 aaPredicted RBP12.58□□□□□ -0.4
CCDC28A-203ENST00000617445 TAGLN2P37802 199 aaKnown RBP12.58□□□□□ -0.4
CCDC28A-203ENST00000617445 GNG4P50150 75 aa12.58□□□□□ -0.4
CCDC28A-203ENST00000617445 CACNG7P62955 275 aa12.58□□□□□ -0.4
CCDC28A-203ENST00000617445 OR2D3Q8NGH3 330 aa12.58□□□□□ -0.4
CCDC28A-203ENST00000617445 C19orf71A6NCJ1 209 aa12.57□□□□□ -0.4
CCDC28A-203ENST00000617445 F2Z2F3 143 aa12.57□□□□□ -0.4
CCDC28A-203ENST00000617445 LECT2O14960 151 aa12.57□□□□□ -0.4
CCDC28A-203ENST00000617445 IGLV2-8P01709 118 aa12.57□□□□□ -0.4
CCDC28A-203ENST00000617445 IGLC6P0CF74 106 aa12.57□□□□□ -0.4
CCDC28A-203ENST00000617445 FER1L6-AS1Q8NA97 138 aa12.57□□□□□ -0.4
CCDC28A-203ENST00000617445 SRRM2Q9UQ35 2752 aaKnown RBP12.56□□□□□ -0.4
CCDC28A-203ENST00000617445 H7C1H1 209 aa12.56□□□□□ -0.4
CCDC28A-203ENST00000617445 SSTP61278 116 aa12.56□□□□□ -0.4
CCDC28A-203ENST00000617445 Q6ZSA8 131 aa12.56□□□□□ -0.4
CCDC28A-203ENST00000617445 DNAJC30Q96LL9 226 aa12.56□□□□□ -0.4
CCDC28A-203ENST00000617445 MED9Q9NWA0 146 aa12.56□□□□□ -0.4
CCDC28A-203ENST00000617445 DMBT1Q9UGM3 2413 aaPredicted RBP12.56□□□□□ -0.4
CCDC28A-203ENST00000617445 RAB19A4D1S5 217 aa12.55□□□□□ -0.4
CCDC28A-203ENST00000617445 P01737 135 aa12.55□□□□□ -0.4
CCDC28A-203ENST00000617445 CRPP02741 224 aa12.55□□□□□ -0.4
CCDC28A-203ENST00000617445 BCL2P10415 239 aa12.55□□□□□ -0.4
CCDC28A-203ENST00000617445 C14orf177Q52M58 125 aa12.55□□□□□ -0.4
CCDC28A-203ENST00000617445 CHCHD5Q9BSY4 110 aa12.55□□□□□ -0.4
CCDC28A-203ENST00000617445 C1orf43Q9BWL3 253 aa12.55□□□□□ -0.4
CCDC28A-203ENST00000617445 FAM30AQ9NZY2 134 aa12.55□□□□□ -0.4
CCDC28A-203ENST00000617445 FAT1Q14517 4588 aa12.54□□□□□ -0.4
CCDC28A-203ENST00000617445 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.54□□□□□ -0.4
CCDC28A-203ENST00000617445 BLOC1S1P78537 153 aa12.54□□□□□ -0.4
CCDC28A-203ENST00000617445 ALKAL2Q6UX46 152 aa12.54□□□□□ -0.4
CCDC28A-203ENST00000617445 TPPP3Q9BW30 176 aa12.54□□□□□ -0.4
CCDC28A-203ENST00000617445 ANGP03950 147 aaKnown RBP12.53□□□□□ -0.4
CCDC28A-203ENST00000617445 GZMBP10144 247 aa12.53□□□□□ -0.4
CCDC28A-203ENST00000617445 MPV17L2Q567V2 206 aa12.53□□□□□ -0.4
CCDC28A-203ENST00000617445 WDR73Q6P4I2 378 aa12.53□□□□□ -0.4
CCDC28A-203ENST00000617445 C15orf54Q8N8G6 183 aa12.53□□□□□ -0.4
CCDC28A-203ENST00000617445 TRBV25-1A0A075B6N4 114 aa12.52□□□□□ -0.41
CCDC28A-203ENST00000617445 M0QY20 66 aa12.52□□□□□ -0.41
CCDC28A-203ENST00000617445 TRGC1P0CF51 173 aa12.52□□□□□ -0.41
CCDC28A-203ENST00000617445 HAMPP81172 84 aa12.52□□□□□ -0.41
CCDC28A-203ENST00000617445 MIAQ16674 131 aa12.52□□□□□ -0.41
CCDC28A-203ENST00000617445 ENHOQ6UWT2 76 aa12.52□□□□□ -0.41
CCDC28A-203ENST00000617445 FLG2Q5D862 2391 aaPredicted RBP12.52□□□□□ -0.41
CCDC28A-203ENST00000617445 TRBV20OR9-2A0A075B6H5 130 aa12.51□□□□□ -0.41
CCDC28A-203ENST00000617445 NKX2-5P52952 324 aaPredicted RBP12.51□□□□□ -0.41
CCDC28A-203ENST00000617445 NTM-AS1Q6ZSK4 140 aa12.51□□□□□ -0.41
CCDC28A-203ENST00000617445 VPS13BQ7Z7G8 4022 aa12.51□□□□□ -0.41
CCDC28A-203ENST00000617445 MGPP08493 103 aa12.5□□□□□ -0.41
CCDC28A-203ENST00000617445 IQCJQ1A5X6 159 aa12.5□□□□□ -0.41
CCDC28A-203ENST00000617445 IGHV1-24A0A0C4DH33 117 aa12.49□□□□□ -0.41
CCDC28A-203ENST00000617445 SUMO4Q6EEV6 95 aa12.49□□□□□ -0.41
CCDC28A-203ENST00000617445 LYZL1Q6UWQ5 148 aa12.49□□□□□ -0.41
CCDC28A-203ENST00000617445 LYPD6BQ8NI32 183 aa12.49□□□□□ -0.41
CCDC28A-203ENST00000617445 PRR34Q9NV39 138 aa12.49□□□□□ -0.41
CCDC28A-203ENST00000617445 PLA2G1BP04054 148 aaKnown RBP12.48□□□□□ -0.41
CCDC28A-203ENST00000617445 NTF3P20783 257 aa12.48□□□□□ -0.41
CCDC28A-203ENST00000617445 RASL11AQ6T310 242 aa12.48□□□□□ -0.41
CCDC28A-203ENST00000617445 NUDT10Q8NFP7 164 aa12.48□□□□□ -0.41
CCDC28A-203ENST00000617445 NUDT11Q96G61 164 aa12.48□□□□□ -0.41
CCDC28A-203ENST00000617445 DPH3P1Q9H4G8 78 aa12.48□□□□□ -0.41
CCDC28A-203ENST00000617445 RBX1P62877 108 aa12.47□□□□□ -0.41
CCDC28A-203ENST00000617445 NIT2Q9NQR4 276 aa12.47□□□□□ -0.41
CCDC28A-203ENST00000617445 CTRLP40313 264 aa12.46□□□□□ -0.41
CCDC28A-203ENST00000617445 GAGE6Q13070 117 aa12.46□□□□□ -0.41
CCDC28A-203ENST00000617445 CNFNQ9BYD5 112 aa12.46□□□□□ -0.41
CCDC28A-203ENST00000617445 PGLYRP4Q96LB8 373 aa12.45□□□□□ -0.42
CCDC28A-203ENST00000617445 RPP21Q9H633 154 aaKnown RBP12.45□□□□□ -0.42
CCDC28A-203ENST00000617445 DNAH8Q96JB1 4490 aa12.45□□□□□ -0.42
CCDC28A-203ENST00000617445 A0A1B0GUV1 79 aa12.44□□□□□ -0.42
CCDC28A-203ENST00000617445 TMEM250H0YL14 139 aa12.44□□□□□ -0.42
CCDC28A-203ENST00000617445 LINC00269Q8N2A0 174 aa12.44□□□□□ -0.42
CCDC28A-203ENST00000617445 OCC1Q8TAD7 63 aa12.44□□□□□ -0.42
CCDC28A-203ENST00000617445 TMEM243Q9BU79 118 aa12.44□□□□□ -0.42
CCDC28A-203ENST00000617445 CHAC1Q9BUX1 264 aa12.44□□□□□ -0.42
CCDC28A-203ENST00000617445 TWIST1Q15672 202 aa12.43□□□□□ -0.42
CCDC28A-203ENST00000617445 LINC01620Q4KN68 170 aa12.43□□□□□ -0.42
CCDC28A-203ENST00000617445 DGAT2L7PQ6IED9 249 aa12.43□□□□□ -0.42
CCDC28A-203ENST00000617445 LINC00528Q8N1L1 170 aa12.43□□□□□ -0.42
CCDC28A-203ENST00000617445 TRAV8-4A0A0B4J246 113 aa12.42□□□□□ -0.42
CCDC28A-203ENST00000617445 USP17L23D6RBM5 183 aa12.42□□□□□ -0.42
CCDC28A-203ENST00000617445 HLA-DQA1P01909 254 aa12.42□□□□□ -0.42
CCDC28A-203ENST00000617445 SCXQ7RTU7 201 aa12.42□□□□□ -0.42
CCDC28A-203ENST00000617445 RNASE7Q9H1E1 156 aaKnown RBP12.42□□□□□ -0.42
CCDC28A-203ENST00000617445 K7EN84 100 aa12.41□□□□□ -0.42
CCDC28A-203ENST00000617445 NDUFS6O75380 124 aaKnown RBP12.41□□□□□ -0.42
CCDC28A-203ENST00000617445 REG3AQ06141 175 aa12.41□□□□□ -0.42
CCDC28A-203ENST00000617445 COTL1Q14019 142 aa12.4□□□□□ -0.42
CCDC28A-203ENST00000617445 KRTAP26-1Q6PEX3 210 aa12.4□□□□□ -0.42
CCDC28A-203ENST00000617445 SMIM15Q7Z3B0 74 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms