RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 DAND5Q8N907 189 aa9.48□□□□□ -0.89
LIG1-221ENST00000613670 CLUHP3Q96NS8 147 aa9.48□□□□□ -0.89
LIG1-221ENST00000613670 IGHV3-53P01767 116 aa9.48□□□□□ -0.89
LIG1-221ENST00000613670 SS18L2Q9UHA2 77 aa9.48□□□□□ -0.89
LIG1-221ENST00000613670 TRAV13-1A0A0B4J241 112 aa9.47□□□□□ -0.89
LIG1-221ENST00000613670 NOTCH2Q04721 2471 aa9.47□□□□□ -0.89
LIG1-221ENST00000613670 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.47□□□□□ -0.89
LIG1-221ENST00000613670 IGKV2-29A2NJV5 120 aaPredicted RBP9.47□□□□□ -0.89
LIG1-221ENST00000613670 H3BMM0 161 aa9.47□□□□□ -0.89
LIG1-221ENST00000613670 P0DMU3 169 aa9.47□□□□□ -0.89
LIG1-221ENST00000613670 FAM231AP0DMU4 169 aa9.47□□□□□ -0.89
LIG1-221ENST00000613670 FAM231CP0DMU5 169 aa9.47□□□□□ -0.89
LIG1-221ENST00000613670 EDN2P20800 178 aa9.47□□□□□ -0.89
LIG1-221ENST00000613670 UBE2WQ96B02 151 aa9.47□□□□□ -0.89
LIG1-221ENST00000613670 TIMM17AQ99595 171 aa9.47□□□□□ -0.89
LIG1-221ENST00000613670 ZNF292O60281 2723 aa9.46□□□□□ -0.89
LIG1-221ENST00000613670 IGHV4-4A0A075B6R2 117 aa9.46□□□□□ -0.89
LIG1-221ENST00000613670 XGP55808 180 aa9.46□□□□□ -0.89
LIG1-221ENST00000613670 C19orf54Q5BKX5 351 aa9.46□□□□□ -0.89
LIG1-221ENST00000613670 RNF183Q96D59 192 aa9.46□□□□□ -0.89
LIG1-221ENST00000613670 PSMG3-AS1Q96PY0 264 aa9.46□□□□□ -0.89
LIG1-221ENST00000613670 SPATA25Q9BR10 227 aa9.46□□□□□ -0.89
LIG1-221ENST00000613670 C11orf71Q6IPW1 123 aa9.46□□□□□ -0.9
LIG1-221ENST00000613670 A0A1W2PPR1 153 aa9.46□□□□□ -0.9
LIG1-221ENST00000613670 LEPROTO15243 131 aa9.46□□□□□ -0.9
LIG1-221ENST00000613670 SLC25A29Q8N8R3 303 aa9.46□□□□□ -0.9
LIG1-221ENST00000613670 IGHV4-59P01825 116 aa9.45□□□□□ -0.9
LIG1-221ENST00000613670 MSMBP08118 114 aa9.45□□□□□ -0.9
LIG1-221ENST00000613670 UBE2E2Q96LR5 201 aa9.45□□□□□ -0.9
LIG1-221ENST00000613670 LINC01620Q4KN68 170 aa9.45□□□□□ -0.9
LIG1-221ENST00000613670 C15orf53Q8NAA6 179 aa9.45□□□□□ -0.9
LIG1-221ENST00000613670 ZNRF2Q8NHG8 242 aa9.45□□□□□ -0.9
LIG1-221ENST00000613670 NFE4Q86UQ8 179 aa9.44□□□□□ -0.9
LIG1-221ENST00000613670 TSPEAR-AS2P59090 65 aa9.44□□□□□ -0.9
LIG1-221ENST00000613670 A0A1W2PRX2 142 aa9.44□□□□□ -0.9
LIG1-221ENST00000613670 RHODO00212 210 aa9.44□□□□□ -0.9
LIG1-221ENST00000613670 UBE2L6O14933 153 aa9.44□□□□□ -0.9
LIG1-221ENST00000613670 LRBAP50851 2863 aa9.44□□□□□ -0.9
LIG1-221ENST00000613670 RHOHQ15669 191 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 DEFB136Q30KP8 78 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 TCTEX1D4Q5JR98 221 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 ATP6V0E2Q8NHE4 81 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 YAE1D1Q9NRH1 226 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 MED14OSP0DP75 135 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 C10orf99Q6UWK7 81 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 C20orf203Q8NBC4 194 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 CARD19Q96LW7 228 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 U3KQE9 123 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 ABCA2Q9BZC7 2435 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 IGHV3-30P01768 117 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 IGHV3-30-5P0DP03 117 aa9.43□□□□□ -0.9
LIG1-221ENST00000613670 IGHG2P01859 326 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 IGHV3-30-3P0DP02 117 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 GPHB5Q86YW7 130 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 CLEC2BQ92478 149 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 TEX49A0A1B0GTD5 131 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 A8MZ25 164 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 B4DSR2 109 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 PRM2P04554 102 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 UBE2D1P51668 147 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 XCL2Q9UBD3 114 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 IGHV4-30-2A0A087WSY4 118 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 TRGV1A0A0A0MS02 117 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 POLR2KP53803 58 aaKnown RBP9.42□□□□□ -0.9
LIG1-221ENST00000613670 PRIMA1Q86XR5 153 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 OR13C6PQ8NH95 151 aa9.42□□□□□ -0.9
LIG1-221ENST00000613670 ZFYVE26Q68DK2 2539 aa9.41□□□□□ -0.9
LIG1-221ENST00000613670 IGIPA6NJ69 53 aa9.41□□□□□ -0.9
LIG1-221ENST00000613670 ZNF22P17026 224 aaPredicted RBP9.41□□□□□ -0.9
LIG1-221ENST00000613670 CRIP2P52943 208 aaPredicted RBP9.41□□□□□ -0.9
LIG1-221ENST00000613670 PROK1P58294 105 aa9.41□□□□□ -0.9
LIG1-221ENST00000613670 FN1P02751 2386 aaKnown RBP9.41□□□□□ -0.9
LIG1-221ENST00000613670 IGLV4-69A0A075B6H9 119 aa9.41□□□□□ -0.9
LIG1-221ENST00000613670 PRSS47A8MTI9 375 aa9.41□□□□□ -0.9
LIG1-221ENST00000613670 ZNF415Q09FC8 603 aa9.41□□□□□ -0.9
LIG1-221ENST00000613670 ZNF580Q9UK33 172 aa9.41□□□□□ -0.9
LIG1-221ENST00000613670 IGHV3-33P01772 117 aa9.4□□□□□ -0.9
LIG1-221ENST00000613670 CRYGDP07320 174 aa9.4□□□□□ -0.9
LIG1-221ENST00000613670 NRGNQ92686 78 aa9.4□□□□□ -0.9
LIG1-221ENST00000613670 DMXL1Q9Y485 3027 aa9.4□□□□□ -0.9
LIG1-221ENST00000613670 COL27A1Q8IZC6 1860 aaPredicted RBP9.4□□□□□ -0.9
LIG1-221ENST00000613670 DNAL4O96015 105 aa9.4□□□□□ -0.9
LIG1-221ENST00000613670 IFITM1P13164 125 aa9.4□□□□□ -0.9
LIG1-221ENST00000613670 DEFB112Q30KQ8 113 aa9.4□□□□□ -0.9
LIG1-221ENST00000613670 CENPEQ02224 2701 aa9.4□□□□□ -0.9
LIG1-221ENST00000613670 LRRK2Q5S007 2527 aa9.4□□□□□ -0.9
LIG1-221ENST00000613670 A0A0J9YXY3 114 aa9.4□□□□□ -0.91
LIG1-221ENST00000613670 C19orf84I3L1E1 186 aa9.4□□□□□ -0.91
LIG1-221ENST00000613670 SMCPP49901 116 aaPredicted RBP9.4□□□□□ -0.91
LIG1-221ENST00000613670 C3orf56Q8N813 242 aa9.4□□□□□ -0.91
LIG1-221ENST00000613670 LINC01546A6NGU7 62 aa9.39□□□□□ -0.91
LIG1-221ENST00000613670 M0QY20 66 aa9.39□□□□□ -0.91
LIG1-221ENST00000613670 NBL1P41271 181 aa9.39□□□□□ -0.91
LIG1-221ENST00000613670 GAGE5Q13069 117 aa9.39□□□□□ -0.91
LIG1-221ENST00000613670 GAGE6Q13070 117 aa9.39□□□□□ -0.91
LIG1-221ENST00000613670 A0A0J9YX75 114 aa9.39□□□□□ -0.91
LIG1-221ENST00000613670 PRO0461Q9UI25 63 aa9.39□□□□□ -0.91
LIG1-221ENST00000613670 TSHBP01222 138 aa9.39□□□□□ -0.91
LIG1-221ENST00000613670 HOXD3P31249 432 aaPredicted RBP9.39□□□□□ -0.91
LIG1-221ENST00000613670 ICOSQ9Y6W8 199 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms