RNA–Protein interactions for RNA: ENST00000613073.4

CNOT3-208, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-208ENST00000613073 SOCS3O14543 225 aa12.36□□□□□ -0.43
CNOT3-208ENST00000613073 SPANXN1Q5VSR9 72 aa12.35□□□□□ -0.43
CNOT3-208ENST00000613073 ITPR2Q14571 2701 aa12.35□□□□□ -0.43
CNOT3-208ENST00000613073 GAGE2BQ13066 116 aa12.35□□□□□ -0.43
CNOT3-208ENST00000613073 GAGE2EQ4V326 116 aa12.35□□□□□ -0.43
CNOT3-208ENST00000613073 NDUFA11Q86Y39 141 aa12.35□□□□□ -0.43
CNOT3-208ENST00000613073 KRTAP1-3Q8IUG1 177 aa12.35□□□□□ -0.43
CNOT3-208ENST00000613073 PSMG3-AS1Q96PY0 264 aa12.35□□□□□ -0.43
CNOT3-208ENST00000613073 GAGE2DQ9UEU5 116 aa12.35□□□□□ -0.43
CNOT3-208ENST00000613073 LRRC75A-AS1Q8N1F1 130 aa12.35□□□□□ -0.43
CNOT3-208ENST00000613073 RAX2Q96IS3 184 aa12.35□□□□□ -0.43
CNOT3-208ENST00000613073 C9JAW5 83 aa12.34□□□□□ -0.43
CNOT3-208ENST00000613073 CD7P09564 240 aa12.34□□□□□ -0.43
CNOT3-208ENST00000613073 OR10J6PQ8NGY7 276 aa12.34□□□□□ -0.43
CNOT3-208ENST00000613073 TRPT1Q86TN4 253 aaKnown RBP12.34□□□□□ -0.43
CNOT3-208ENST00000613073 RASL10AQ92737 203 aa12.34□□□□□ -0.43
CNOT3-208ENST00000613073 ZNF702PQ9H963 129 aa12.34□□□□□ -0.43
CNOT3-208ENST00000613073 SORL1Q92673 2214 aa12.33□□□□□ -0.44
CNOT3-208ENST00000613073 SNCGO76070 127 aa12.33□□□□□ -0.44
CNOT3-208ENST00000613073 NDUFV3P56181 108 aaKnown RBP12.33□□□□□ -0.44
CNOT3-208ENST00000613073 SRSF2Q01130 221 aaKnown RBP12.33□□□□□ -0.44
CNOT3-208ENST00000613073 WFDC11Q8NEX6 87 aa12.33□□□□□ -0.44
CNOT3-208ENST00000613073 CITED1Q99966 193 aa12.33□□□□□ -0.44
CNOT3-208ENST00000613073 ACANP16112 2415 aa12.33□□□□□ -0.44
CNOT3-208ENST00000613073 C3orf56Q8N813 242 aa12.33□□□□□ -0.44
CNOT3-208ENST00000613073 RPL32P62910 135 aaKnown RBP12.32□□□□□ -0.44
CNOT3-208ENST00000613073 TTC32Q5I0X7 151 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 RPL39LQ96EH5 51 aaKnown RBP12.32□□□□□ -0.44
CNOT3-208ENST00000613073 SMIM2Q9BVW6 85 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 ZNF580Q9UK33 172 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 GAGE12JA6NER3 117 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 LINC01619G3V211 115 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 SLC25A20O43772 301 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 GAGE7O76087 117 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 GAGE12FP0CL80 117 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 GAGE12GP0CL81 117 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 GAGE12IP0CL82 117 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 GAGE4Q13068 117 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 NEXN-AS1Q8NBZ9 246 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 AKAP9Q99996 3911 aa12.32□□□□□ -0.44
CNOT3-208ENST00000613073 LYRM7Q5U5X0 104 aa12.31□□□□□ -0.44
CNOT3-208ENST00000613073 BAALCQ8WXS3 180 aa12.31□□□□□ -0.44
CNOT3-208ENST00000613073 OVOL1O14753 267 aa12.31□□□□□ -0.44
CNOT3-208ENST00000613073 CFC1BP0CG36 223 aa12.31□□□□□ -0.44
CNOT3-208ENST00000613073 CFC1P0CG37 223 aa12.31□□□□□ -0.44
CNOT3-208ENST00000613073 SYNJ2BPP57105 145 aa12.31□□□□□ -0.44
CNOT3-208ENST00000613073 LINC00477Q96M19 166 aa12.31□□□□□ -0.44
CNOT3-208ENST00000613073 TRAV12-1A0A0B4J245 112 aa12.3□□□□□ -0.44
CNOT3-208ENST00000613073 RHODO00212 210 aa12.3□□□□□ -0.44
CNOT3-208ENST00000613073 ZFAND2AQ8N6M9 145 aa12.3□□□□□ -0.44
CNOT3-208ENST00000613073 TMEM262E9PQX1 116 aa12.3□□□□□ -0.44
CNOT3-208ENST00000613073 HIST2H2BDQ6DRA6 164 aa12.3□□□□□ -0.44
CNOT3-208ENST00000613073 C2orf66Q6UXQ4 117 aa12.3□□□□□ -0.44
CNOT3-208ENST00000613073 K7EMT4 169 aa12.3□□□□□ -0.44
CNOT3-208ENST00000613073 M0R381 172 aa12.3□□□□□ -0.44
CNOT3-208ENST00000613073 RNASE4P34096 147 aaKnown RBP12.3□□□□□ -0.44
CNOT3-208ENST00000613073 FAM159AQ6UWV7 190 aa12.3□□□□□ -0.44
CNOT3-208ENST00000613073 SETD2Q9BYW2 2564 aaPredicted RBP12.29□□□□□ -0.44
CNOT3-208ENST00000613073 IGHV4OR15-8A0A075B7B6 117 aa12.29□□□□□ -0.44
CNOT3-208ENST00000613073 A0A087WW49 117 aa12.29□□□□□ -0.44
CNOT3-208ENST00000613073 NTN5Q8WTR8 489 aaPredicted RBP12.29□□□□□ -0.44
CNOT3-208ENST00000613073 PDZD2O15018 2839 aa12.28□□□□□ -0.44
CNOT3-208ENST00000613073 KMT2BQ9UMN6 2715 aaPredicted RBP12.28□□□□□ -0.44
CNOT3-208ENST00000613073 A0A0J9YY99 117 aa12.28□□□□□ -0.44
CNOT3-208ENST00000613073 DEFB136Q30KP8 78 aa12.28□□□□□ -0.44
CNOT3-208ENST00000613073 C18orf65Q6ZTR6 163 aa12.28□□□□□ -0.44
CNOT3-208ENST00000613073 VCX2Q9H322 139 aa12.28□□□□□ -0.44
CNOT3-208ENST00000613073 IFITM1P13164 125 aa12.28□□□□□ -0.44
CNOT3-208ENST00000613073 C10orf126Q8N4M7 172 aa12.28□□□□□ -0.44
CNOT3-208ENST00000613073 DCANP1Q8TF63 244 aa12.28□□□□□ -0.44
CNOT3-208ENST00000613073 C11orf86A6NJI1 115 aa12.27□□□□□ -0.44
CNOT3-208ENST00000613073 MGPP08493 103 aa12.27□□□□□ -0.44
CNOT3-208ENST00000613073 LENEPQ9Y5L5 61 aa12.27□□□□□ -0.44
CNOT3-208ENST00000613073 TMEM89A2RUT3 159 aa12.27□□□□□ -0.45
CNOT3-208ENST00000613073 SUMO2P61956 95 aaKnown RBP12.27□□□□□ -0.45
CNOT3-208ENST00000613073 TOMM6Q96B49 74 aa12.27□□□□□ -0.45
CNOT3-208ENST00000613073 FAM110AQ9BQ89 295 aa12.27□□□□□ -0.45
CNOT3-208ENST00000613073 ELANEP08246 267 aa12.26□□□□□ -0.45
CNOT3-208ENST00000613073 TSPEAR-AS2P59090 65 aa12.26□□□□□ -0.45
CNOT3-208ENST00000613073 SBSPONQ8IVN8 264 aa12.26□□□□□ -0.45
CNOT3-208ENST00000613073 MTORP42345 2549 aa12.26□□□□□ -0.45
CNOT3-208ENST00000613073 DUSP14O95147 198 aaKnown RBP12.26□□□□□ -0.45
CNOT3-208ENST00000613073 HOXD3P31249 432 aaPredicted RBP12.26□□□□□ -0.45
CNOT3-208ENST00000613073 ORMDL2Q53FV1 153 aa12.26□□□□□ -0.45
CNOT3-208ENST00000613073 C14orf178Q8N769 122 aaPredicted RBP12.26□□□□□ -0.45
CNOT3-208ENST00000613073 TRAV21A0A0B4J279 112 aa12.25□□□□□ -0.45
CNOT3-208ENST00000613073 TEX49A0A1B0GTD5 131 aa12.25□□□□□ -0.45
CNOT3-208ENST00000613073 IGKV3-20P01619 116 aa12.25□□□□□ -0.45
CNOT3-208ENST00000613073 PRO1854Q9UHT4 67 aa12.25□□□□□ -0.45
CNOT3-208ENST00000613073 ID1P41134 155 aa12.25□□□□□ -0.45
CNOT3-208ENST00000613073 UBE2E2Q96LR5 201 aa12.25□□□□□ -0.45
CNOT3-208ENST00000613073 TMEM170BQ5T4T1 132 aa12.24□□□□□ -0.45
CNOT3-208ENST00000613073 Q8N1Y9 231 aa12.24□□□□□ -0.45
CNOT3-208ENST00000613073 DUX3Q96PT4 197 aa12.24□□□□□ -0.45
CNOT3-208ENST00000613073 IGHV3-30P01768 117 aa12.24□□□□□ -0.45
CNOT3-208ENST00000613073 IGHV3-30-5P0DP03 117 aa12.24□□□□□ -0.45
CNOT3-208ENST00000613073 PLA2G2AP14555 144 aa12.24□□□□□ -0.45
CNOT3-208ENST00000613073 S100A4P26447 101 aaKnown RBP12.24□□□□□ -0.45
CNOT3-208ENST00000613073 Q1RN00 199 aa12.24□□□□□ -0.45
CNOT3-208ENST00000613073 KHDC1LQ5JSQ8 128 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms