RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-214ENST00000597396 FRAS1Q86XX4 4008 aa13.42□□□□□ -0.26
SHKBP1-214ENST00000597396 A0A087WWC5 75 aa13.42□□□□□ -0.26
SHKBP1-214ENST00000597396 SMIM27A0A1W2PRY6 76 aa13.42□□□□□ -0.26
SHKBP1-214ENST00000597396 TMEM218A2RU14 115 aa13.42□□□□□ -0.26
SHKBP1-214ENST00000597396 LINC00862A6NCI5 91 aa13.42□□□□□ -0.26
SHKBP1-214ENST00000597396 M0QY20 66 aa13.42□□□□□ -0.26
SHKBP1-214ENST00000597396 C1orf134Q5TEV5 83 aa13.42□□□□□ -0.26
SHKBP1-214ENST00000597396 RASL11AQ6T310 242 aa13.42□□□□□ -0.26
SHKBP1-214ENST00000597396 TNFRSF18Q9Y5U5 241 aa13.42□□□□□ -0.26
SHKBP1-214ENST00000597396 DNAJC30Q96LL9 226 aa13.41□□□□□ -0.26
SHKBP1-214ENST00000597396 TRAV9-2A0A087WT02 112 aa13.4□□□□□ -0.26
SHKBP1-214ENST00000597396 IGHV3-38A0A0C4DH36 116 aa13.4□□□□□ -0.26
SHKBP1-214ENST00000597396 MT-ND4LP03901 98 aa13.4□□□□□ -0.26
SHKBP1-214ENST00000597396 DNAH10OSP0CZ25 163 aa13.4□□□□□ -0.26
SHKBP1-214ENST00000597396 C6orf223Q8N319 242 aa13.4□□□□□ -0.26
SHKBP1-214ENST00000597396 KRTAP1-5Q9BYS1 174 aa13.4□□□□□ -0.26
SHKBP1-214ENST00000597396 ADCYAP1P18509 176 aa13.39□□□□□ -0.27
SHKBP1-214ENST00000597396 ANAPC16Q96DE5 110 aa13.39□□□□□ -0.27
SHKBP1-214ENST00000597396 TMEM191AQ9H0A3 160 aa13.39□□□□□ -0.27
SHKBP1-214ENST00000597396 DAZ4Q86SG3 579 aaKnown RBP13.38□□□□□ -0.27
SHKBP1-214ENST00000597396 SEC11CQ9BY50 192 aa13.38□□□□□ -0.27
SHKBP1-214ENST00000597396 NIT2Q9NQR4 276 aa13.38□□□□□ -0.27
SHKBP1-214ENST00000597396 DAZ3Q9NR90 486 aaKnown RBP13.38□□□□□ -0.27
SHKBP1-214ENST00000597396 TRAV26-2A0A0B4J265 109 aa13.37□□□□□ -0.27
SHKBP1-214ENST00000597396 RTL8CO15255 209 aa13.37□□□□□ -0.27
SHKBP1-214ENST00000597396 LINC00336Q6ZUF6 198 aa13.37□□□□□ -0.27
SHKBP1-214ENST00000597396 GATD1Q8NB37 220 aa13.37□□□□□ -0.27
SHKBP1-214ENST00000597396 K7EP13 123 aa13.36□□□□□ -0.27
SHKBP1-214ENST00000597396 TMEM97Q5BJF2 176 aa13.36□□□□□ -0.27
SHKBP1-214ENST00000597396 LINC01556Q5JQF7 62 aa13.36□□□□□ -0.27
SHKBP1-214ENST00000597396 C10orf126Q8N4M7 172 aa13.36□□□□□ -0.27
SHKBP1-214ENST00000597396 A0A1B0GW15 77 aa13.35□□□□□ -0.27
SHKBP1-214ENST00000597396 IGHV3-30P01768 117 aa13.35□□□□□ -0.27
SHKBP1-214ENST00000597396 IGHV3-33P01772 117 aa13.35□□□□□ -0.27
SHKBP1-214ENST00000597396 IGHV3-30-3P0DP02 117 aa13.35□□□□□ -0.27
SHKBP1-214ENST00000597396 IGHV3-30-5P0DP03 117 aa13.35□□□□□ -0.27
SHKBP1-214ENST00000597396 CAMPP49913 170 aa13.35□□□□□ -0.27
SHKBP1-214ENST00000597396 MRPL54Q6P161 138 aaKnown RBP13.35□□□□□ -0.27
SHKBP1-214ENST00000597396 FRZBQ92765 325 aa13.35□□□□□ -0.27
SHKBP1-214ENST00000597396 DNAH10Q8IVF4 4471 aa13.35□□□□□ -0.27
SHKBP1-214ENST00000597396 TRBV6-8A0A0A6YYG3 113 aa13.34□□□□□ -0.27
SHKBP1-214ENST00000597396 BTF3P20290 206 aaKnown RBP13.34□□□□□ -0.27
SHKBP1-214ENST00000597396 AMN1Q8IY45 258 aa13.34□□□□□ -0.27
SHKBP1-214ENST00000597396 PRSS29PA6NIE9 313 aa13.33□□□□□ -0.28
SHKBP1-214ENST00000597396 S100A8P05109 93 aa13.33□□□□□ -0.28
SHKBP1-214ENST00000597396 KCNIP4Q6PIL6 250 aa13.33□□□□□ -0.28
SHKBP1-214ENST00000597396 RPL39LQ96EH5 51 aaKnown RBP13.33□□□□□ -0.28
SHKBP1-214ENST00000597396 URGCP-MRPS24S4R325 110 aa13.33□□□□□ -0.28
SHKBP1-214ENST00000597396 RAB4AP20338 218 aa13.32□□□□□ -0.28
SHKBP1-214ENST00000597396 HBBP68871 147 aa13.32□□□□□ -0.28
SHKBP1-214ENST00000597396 MRAP2Q96G30 205 aa13.32□□□□□ -0.28
SHKBP1-214ENST00000597396 RNF185Q96GF1 192 aa13.32□□□□□ -0.28
SHKBP1-214ENST00000597396 NIT1Q86X76 327 aa13.31□□□□□ -0.28
SHKBP1-214ENST00000597396 TRBV25-1A0A075B6N4 114 aa13.3□□□□□ -0.28
SHKBP1-214ENST00000597396 ATP5L2Q7Z4Y8 100 aa13.3□□□□□ -0.28
SHKBP1-214ENST00000597396 Q8N3U1 123 aa13.3□□□□□ -0.28
SHKBP1-214ENST00000597396 CHCHD5Q9BSY4 110 aa13.3□□□□□ -0.28
SHKBP1-214ENST00000597396 A0A087WX48 190 aa13.29□□□□□ -0.28
SHKBP1-214ENST00000597396 IGHV1-24A0A0C4DH33 117 aa13.29□□□□□ -0.28
SHKBP1-214ENST00000597396 A0A1B0GXF2 115 aa13.29□□□□□ -0.28
SHKBP1-214ENST00000597396 TMEM262E9PQX1 116 aa13.29□□□□□ -0.28
SHKBP1-214ENST00000597396 FAM104BQ5XKR9 115 aa13.29□□□□□ -0.28
SHKBP1-214ENST00000597396 NTM-AS1Q6ZSK4 140 aa13.29□□□□□ -0.28
SHKBP1-214ENST00000597396 NFE4Q86UQ8 179 aa13.29□□□□□ -0.28
SHKBP1-214ENST00000597396 KRTAP17-1Q9BYP8 105 aa13.29□□□□□ -0.28
SHKBP1-214ENST00000597396 CTDSP1Q9GZU7 261 aa13.29□□□□□ -0.28
SHKBP1-214ENST00000597396 COTL1Q14019 142 aa13.28□□□□□ -0.28
SHKBP1-214ENST00000597396 C10orf91Q5T1B1 145 aa13.28□□□□□ -0.28
SHKBP1-214ENST00000597396 CARHSP1Q9Y2V2 147 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-214ENST00000597396 DNAH2Q9P225 4427 aa13.28□□□□□ -0.28
SHKBP1-214ENST00000597396 SDHAF1A6NFY7 115 aa13.27□□□□□ -0.29
SHKBP1-214ENST00000597396 IBA57-AS1B1ANH7 110 aa13.27□□□□□ -0.29
SHKBP1-214ENST00000597396 SMKR1H3BMG3 65 aa13.27□□□□□ -0.29
SHKBP1-214ENST00000597396 GAS8-AS1O95177 125 aa13.27□□□□□ -0.29
SHKBP1-214ENST00000597396 NCR2O95944 276 aa13.27□□□□□ -0.29
SHKBP1-214ENST00000597396 PKIAP61925 76 aa13.27□□□□□ -0.29
SHKBP1-214ENST00000597396 MRPL51Q4U2R6 128 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-214ENST00000597396 DEFB104AQ8WTQ1 72 aa13.27□□□□□ -0.29
SHKBP1-214ENST00000597396 CHCHD7Q9BUK0 85 aa13.27□□□□□ -0.29
SHKBP1-214ENST00000597396 ST20Q9HBF5 79 aa13.27□□□□□ -0.29
SHKBP1-214ENST00000597396 TRBV6-5A0A0K0K1A5 114 aa13.26□□□□□ -0.29
SHKBP1-214ENST00000597396 IQCJQ1A5X6 159 aa13.26□□□□□ -0.29
SHKBP1-214ENST00000597396 BTF3L4Q96K17 158 aa13.26□□□□□ -0.29
SHKBP1-214ENST00000597396 IMMP2LQ96T52 175 aa13.26□□□□□ -0.29
SHKBP1-214ENST00000597396 Q9HAA7 133 aa13.26□□□□□ -0.29
SHKBP1-214ENST00000597396 PPP1R17O96001 155 aa13.25□□□□□ -0.29
SHKBP1-214ENST00000597396 RPS10P46783 165 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-214ENST00000597396 AMTP48728 403 aa13.25□□□□□ -0.29
SHKBP1-214ENST00000597396 TNP2Q05952 138 aa13.25□□□□□ -0.29
SHKBP1-214ENST00000597396 GAGE6Q13070 117 aa13.25□□□□□ -0.29
SHKBP1-214ENST00000597396 TMEM243Q9BU79 118 aa13.25□□□□□ -0.29
SHKBP1-214ENST00000597396 DNAH17Q9UFH2 4485 aa13.24□□□□□ -0.29
SHKBP1-214ENST00000597396 PMCHP20382 165 aa13.24□□□□□ -0.29
SHKBP1-214ENST00000597396 CKS2P33552 79 aa13.24□□□□□ -0.29
SHKBP1-214ENST00000597396 LAGE3Q14657 143 aa13.24□□□□□ -0.29
SHKBP1-214ENST00000597396 ELOBQ15370 118 aa13.24□□□□□ -0.29
SHKBP1-214ENST00000597396 NDUFA5Q16718 116 aa13.24□□□□□ -0.29
SHKBP1-214ENST00000597396 CLRN3Q8NCR9 226 aa13.24□□□□□ -0.29
SHKBP1-214ENST00000597396 C7orf77A4D0Y5 90 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms