RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	KRTAP10-3	P60369	221 aa		11.48	□□□□□ -0.57
DDX39A-209	ENST00000589318	OR10J6P	Q8NGY7	276 aa		11.48	□□□□□ -0.57
DDX39A-209	ENST00000589318	FAM19A4	Q96LR4	140 aa		11.48	□□□□□ -0.57
DDX39A-209	ENST00000589318	LINC00477	Q96M19	166 aa		11.48	□□□□□ -0.57
DDX39A-209	ENST00000589318	TRBV7-3	A0A075B6L6	115 aa		11.47	□□□□□ -0.57
DDX39A-209	ENST00000589318	LEP	P41159	167 aa		11.47	□□□□□ -0.57
DDX39A-209	ENST00000589318	PRR9	Q5T870	116 aa		11.47	□□□□□ -0.57
DDX39A-209	ENST00000589318	ZFAND6	Q6FIF0	208 aa		11.47	□□□□□ -0.57
DDX39A-209	ENST00000589318	TPPP3	Q9BW30	176 aa		11.47	□□□□□ -0.57
DDX39A-209	ENST00000589318	SORL1	Q92673	2214 aa		11.47	□□□□□ -0.57
DDX39A-209	ENST00000589318	ZNF688	P0C7X2	276 aa		11.47	□□□□□ -0.57
DDX39A-209	ENST00000589318	INSL3	P51460	131 aa		11.47	□□□□□ -0.57
DDX39A-209	ENST00000589318	ZFAND2A	Q8N6M9	145 aa		11.47	□□□□□ -0.57
DDX39A-209	ENST00000589318	RNF183	Q96D59	192 aa		11.47	□□□□□ -0.57
DDX39A-209	ENST00000589318	FABP5P3	A8MUU1	101 aa		11.46	□□□□□ -0.58
DDX39A-209	ENST00000589318	GTSCR1	Q86UQ5	136 aa		11.46	□□□□□ -0.58
DDX39A-209	ENST00000589318	C11orf21	Q9P2W6	132 aa		11.46	□□□□□ -0.58
DDX39A-209	ENST00000589318	MT-ATP8	P03928	68 aa		11.45	□□□□□ -0.58
DDX39A-209	ENST00000589318	AMTN	Q6UX39	209 aa		11.45	□□□□□ -0.58
DDX39A-209	ENST00000589318		Q6ZQT7	251 aa		11.45	□□□□□ -0.58
DDX39A-209	ENST00000589318	TEN1	Q86WV5	123 aa		11.45	□□□□□ -0.58
DDX39A-209	ENST00000589318	TMEM61	Q8N0U2	210 aa		11.45	□□□□□ -0.58
DDX39A-209	ENST00000589318	FAM110A	Q9BQ89	295 aa		11.45	□□□□□ -0.58
DDX39A-209	ENST00000589318	DEFB114	Q30KQ6	69 aa		11.45	□□□□□ -0.58
DDX39A-209	ENST00000589318	CNFN	Q9BYD5	112 aa		11.45	□□□□□ -0.58
DDX39A-209	ENST00000589318	AGRN	O00468	2067 aa		11.44	□□□□□ -0.58
DDX39A-209	ENST00000589318	TRBV20-1	A0A075B6N2	111 aa		11.44	□□□□□ -0.58
DDX39A-209	ENST00000589318	TMSB15B	A0A087X1C1	80 aa		11.44	□□□□□ -0.58
DDX39A-209	ENST00000589318		M0QXV9	152 aa		11.44	□□□□□ -0.58
DDX39A-209	ENST00000589318	XG	P55808	180 aa		11.44	□□□□□ -0.58
DDX39A-209	ENST00000589318	SNRPD3	P62318	126 aa	Known RBP	11.44	□□□□□ -0.58
DDX39A-209	ENST00000589318	APRG1	Q8IVJ8	170 aa		11.44	□□□□□ -0.58
DDX39A-209	ENST00000589318		Q8N8P6	123 aa		11.44	□□□□□ -0.58
DDX39A-209	ENST00000589318	IGKV3D-20	A0A0C4DH25	116 aa		11.43	□□□□□ -0.58
DDX39A-209	ENST00000589318	CYSRT1	A8MQ03	144 aa		11.43	□□□□□ -0.58
DDX39A-209	ENST00000589318	NIPBL	Q6KC79	2804 aa	eCLIP	11.43	□□□□□ -0.58	2e-7	■□□□□ 8.1
DDX39A-209	ENST00000589318		A0A087WX48	190 aa		11.43	□□□□□ -0.58
DDX39A-209	ENST00000589318	TRAV2	A0A0B4J234	112 aa		11.43	□□□□□ -0.58
DDX39A-209	ENST00000589318	TRBV7-9	A0A0J9YWB2	115 aa		11.43	□□□□□ -0.58
DDX39A-209	ENST00000589318		A0A0J9YX75	114 aa		11.43	□□□□□ -0.58
DDX39A-209	ENST00000589318	SBSPON	Q8IVN8	264 aa		11.43	□□□□□ -0.58
DDX39A-209	ENST00000589318	TRAV12-1	A0A0B4J245	112 aa		11.42	□□□□□ -0.58
DDX39A-209	ENST00000589318	MYMX	A0A1B0GTQ4	84 aa		11.42	□□□□□ -0.58
DDX39A-209	ENST00000589318	ORM1	P02763	201 aa		11.42	□□□□□ -0.58
DDX39A-209	ENST00000589318	IGLC6	P0CF74	106 aa		11.42	□□□□□ -0.58
DDX39A-209	ENST00000589318	ASIP	P42127	132 aa		11.42	□□□□□ -0.58
DDX39A-209	ENST00000589318	FXYD7	P58549	80 aa		11.42	□□□□□ -0.58
DDX39A-209	ENST00000589318	MORN3	Q6PF18	240 aa	Predicted RBP	11.42	□□□□□ -0.58
DDX39A-209	ENST00000589318	DYNLRB2	Q8TF09	96 aa		11.42	□□□□□ -0.58
DDX39A-209	ENST00000589318	TTTY13	Q9BZ97	58 aa		11.41	□□□□□ -0.58
DDX39A-209	ENST00000589318	SS18L2	Q9UHA2	77 aa		11.41	□□□□□ -0.58
DDX39A-209	ENST00000589318	TNFRSF6B	O95407	300 aa		11.41	□□□□□ -0.58
DDX39A-209	ENST00000589318	SMCP	P49901	116 aa	Predicted RBP	11.41	□□□□□ -0.58
DDX39A-209	ENST00000589318	NSUN5P1	Q3KNT7	163 aa		11.41	□□□□□ -0.58
DDX39A-209	ENST00000589318	NFE4	Q86UQ8	179 aa		11.41	□□□□□ -0.58
DDX39A-209	ENST00000589318	MAPKAPK5-AS1	Q8N8E1	139 aa		11.41	□□□□□ -0.58
DDX39A-209	ENST00000589318	RNF185	Q96GF1	192 aa		11.41	□□□□□ -0.58
DDX39A-209	ENST00000589318	KLLN	B2CW77	178 aa		11.4	□□□□□ -0.58
DDX39A-209	ENST00000589318		J3KRW8	73 aa		11.4	□□□□□ -0.58
DDX39A-209	ENST00000589318	UBE2D3	P61077	147 aa		11.4	□□□□□ -0.58
DDX39A-209	ENST00000589318	UBE2D2	P62837	147 aa		11.4	□□□□□ -0.58
DDX39A-209	ENST00000589318		Q6Q795	121 aa		11.4	□□□□□ -0.58
DDX39A-209	ENST00000589318	NDUFA11	Q86Y39	141 aa		11.39	□□□□□ -0.59
DDX39A-209	ENST00000589318	MRPL35	Q9NZE8	188 aa	Known RBP	11.39	□□□□□ -0.59
DDX39A-209	ENST00000589318	ZNF256	Q9Y2P7	627 aa	Predicted RBP	11.39	□□□□□ -0.59
DDX39A-209	ENST00000589318		A8MWV9	139 aa		11.39	□□□□□ -0.59
DDX39A-209	ENST00000589318		H7C1H1	209 aa		11.39	□□□□□ -0.59
DDX39A-209	ENST00000589318	ODF3	Q96PU9	254 aa		11.39	□□□□□ -0.59
DDX39A-209	ENST00000589318	CITED1	Q99966	193 aa		11.39	□□□□□ -0.59
DDX39A-209	ENST00000589318	TENM1	Q9UKZ4	2725 aa		11.38	□□□□□ -0.59
DDX39A-209	ENST00000589318	SMKR1	H3BMG3	65 aa		11.38	□□□□□ -0.59
DDX39A-209	ENST00000589318	RHOD	O00212	210 aa		11.38	□□□□□ -0.59
DDX39A-209	ENST00000589318	UBE2D1	P51668	147 aa		11.38	□□□□□ -0.59
DDX39A-209	ENST00000589318	LAGE3	Q14657	143 aa		11.38	□□□□□ -0.59
DDX39A-209	ENST00000589318	TRAV25	A0A0B4J276	109 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	TRAV21	A0A0B4J279	112 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	PRSS29P	A6NIE9	313 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318		F8VRH5	84 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	RNASE4	P34096	147 aa	Known RBP	11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	DEFB131A	P59861	70 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	GAGE12J	A6NER3	117 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318		A8MTW9	85 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	GAGE7	O76087	117 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	GAGE12F	P0CL80	117 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	GAGE12G	P0CL81	117 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	GAGE12I	P0CL82	117 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	GAGE4	Q13068	117 aa		11.37	□□□□□ -0.59
DDX39A-209	ENST00000589318	IGLV2-18	A0A075B6J9	118 aa		11.36	□□□□□ -0.59
DDX39A-209	ENST00000589318	PSMB2	P49721	201 aa		11.36	□□□□□ -0.59
DDX39A-209	ENST00000589318	MAP6D1	Q9H9H5	199 aa		11.36	□□□□□ -0.59
DDX39A-209	ENST00000589318	JMJD1C	Q15652	2540 aa		11.36	□□□□□ -0.59
DDX39A-209	ENST00000589318	KNCN	A6PVL3	124 aa		11.35	□□□□□ -0.59
DDX39A-209	ENST00000589318	IGKV3-20	P01619	116 aa		11.35	□□□□□ -0.59
DDX39A-209	ENST00000589318	CARD19	Q96LW7	228 aa		11.35	□□□□□ -0.59
DDX39A-209	ENST00000589318		B5MCH6	92 aa		11.35	□□□□□ -0.59
DDX39A-209	ENST00000589318		K7EMI3	77 aa		11.35	□□□□□ -0.59
DDX39A-209	ENST00000589318	DUSP14	O95147	198 aa	Known RBP	11.35	□□□□□ -0.59
DDX39A-209	ENST00000589318	GAGE2B	Q13066	116 aa		11.35	□□□□□ -0.59
DDX39A-209	ENST00000589318	GAGE2E	Q4V326	116 aa		11.35	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms