RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 Q5VV11 94 aa0.23□□□□□ -2.37
SMCHD1-209ENST00000583441 SPTSSBQ8NFR3 76 aa0.23□□□□□ -2.37
SMCHD1-209ENST00000583441 FAM213BQ8TBF2 198 aa0.23□□□□□ -2.37
SMCHD1-209ENST00000583441 DPH3Q96FX2 82 aa0.23□□□□□ -2.37
SMCHD1-209ENST00000583441 CLPSL1A2RUU4 121 aa0.22□□□□□ -2.37
SMCHD1-209ENST00000583441 TTC28Q96AY4 2481 aa0.22□□□□□ -2.37
SMCHD1-209ENST00000583441 ZNF518AQ6AHZ1 1483 aa0.22□□□□□ -2.37
SMCHD1-209ENST00000583441 LAMB1P07942 1786 aa0.22□□□□□ -2.37
SMCHD1-209ENST00000583441 ABCA12Q86UK0 2595 aa0.21□□□□□ -2.38
SMCHD1-209ENST00000583441 FSIP2Q5CZC0 6907 aa0.21□□□□□ -2.38
SMCHD1-209ENST00000583441 SSC5DA1L4H1 1573 aa0.21□□□□□ -2.38
SMCHD1-209ENST00000583441 PIN1P1O15428 100 aa0.21□□□□□ -2.38
SMCHD1-209ENST00000583441 SEC11CQ9BY50 192 aa0.21□□□□□ -2.38
SMCHD1-209ENST00000583441 MAST4O15021 2626 aa0.21□□□□□ -2.38
SMCHD1-209ENST00000583441 IFT140Q96RY7 1462 aa0.21□□□□□ -2.38
SMCHD1-209ENST00000583441 NRXN2Q9P2S2 1712 aa0.21□□□□□ -2.38
SMCHD1-209ENST00000583441 PIEZO1Q92508 2521 aa0.2□□□□□ -2.38
SMCHD1-209ENST00000583441 LINC00312Q9Y6C7 94 aa0.2□□□□□ -2.38
SMCHD1-209ENST00000583441 GRIN2AQ12879 1464 aa0.2□□□□□ -2.38
SMCHD1-209ENST00000583441 MYH13Q9UKX3 1938 aa0.2□□□□□ -2.38
SMCHD1-209ENST00000583441 KIAA0100Q14667 2235 aaKnown RBP0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 MED13LQ71F56 2210 aa0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 CACNA1HO95180 2353 aa0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 PLXNA1Q9UIW2 1896 aa0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 S100A7L2Q5SY68 101 aa0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 C12orf73Q69YU5 71 aa0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 BAGE3Q86Y29 109 aa0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 UBE2DNLQ8IWF7 75 aa0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 ARL11Q969Q4 196 aa0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 FAT4Q6V0I7 4981 aa0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 SYNE1Q8NF91 8797 aaKnown RBP0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 PHIPQ8WWQ0 1821 aa0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 MYOM3Q5VTT5 1437 aa0.19□□□□□ -2.38
SMCHD1-209ENST00000583441 TRAV1-2A0A0B4J238 106 aa0.18□□□□□ -2.38
SMCHD1-209ENST00000583441 SIX6O95475 246 aa0.18□□□□□ -2.38
SMCHD1-209ENST00000583441 HMGN1P05114 100 aa0.18□□□□□ -2.38
SMCHD1-209ENST00000583441 PDCD10Q9BUL8 212 aa0.18□□□□□ -2.38
SMCHD1-209ENST00000583441 AGPAT4-IT1Q9H0P7 198 aa0.18□□□□□ -2.38
SMCHD1-209ENST00000583441 OTOGQ6ZRI0 2925 aa0.18□□□□□ -2.38
SMCHD1-209ENST00000583441 F5P12259 2224 aa0.17□□□□□ -2.38
SMCHD1-209ENST00000583441 MYO7AQ13402 2215 aa0.17□□□□□ -2.38
SMCHD1-209ENST00000583441 HIST1H1DP16402 221 aaKnown RBP0.17□□□□□ -2.38
SMCHD1-209ENST00000583441 SNRNP25Q9BV90 132 aaKnown RBP0.17□□□□□ -2.38
SMCHD1-209ENST00000583441 LINC00470Q9BZP3 86 aa0.17□□□□□ -2.38
SMCHD1-209ENST00000583441 RERGLQ9H628 205 aa0.17□□□□□ -2.38
SMCHD1-209ENST00000583441 MUC22E2RYF6 1773 aaPredicted RBP0.17□□□□□ -2.38
SMCHD1-209ENST00000583441 LRRC37A3O60309 1634 aa0.16□□□□□ -2.38
SMCHD1-209ENST00000583441 A0A0D9SFI3 127 aa0.16□□□□□ -2.38
SMCHD1-209ENST00000583441 FAM25AB3EWG3 89 aa0.16□□□□□ -2.38
SMCHD1-209ENST00000583441 FAM25CB3EWG5 89 aa0.16□□□□□ -2.38
SMCHD1-209ENST00000583441 FAM25GB3EWG6 89 aa0.16□□□□□ -2.38
SMCHD1-209ENST00000583441 NDUFA2O43678 99 aa0.16□□□□□ -2.38
SMCHD1-209ENST00000583441 AQP10Q96PS8 301 aa0.16□□□□□ -2.38
SMCHD1-209ENST00000583441 TSC22D3Q99576 134 aa0.16□□□□□ -2.38
SMCHD1-209ENST00000583441 AKAP11Q9UKA4 1901 aa0.16□□□□□ -2.38
SMCHD1-209ENST00000583441 ZFYVE26Q68DK2 2539 aa0.16□□□□□ -2.38
SMCHD1-209ENST00000583441 TRAV13-2A0A0B4J235 113 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 SPAARA0A1B0GVQ0 90 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 HCG22E2RYF7 251 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 G3V318 75 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 SPINK8P0C7L1 97 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 NAA60Q9H7X0 242 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 SERP1Q9Y6X1 66 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 R4GMQ9 66 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 U3KQA8 63 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 POLQO75417 2590 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 GOLGA3Q08378 1498 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 PXDNQ92626 1479 aa0.15□□□□□ -2.39
SMCHD1-209ENST00000583441 CADP27708 2225 aa0.14□□□□□ -2.39
SMCHD1-209ENST00000583441 CASKIN1Q8WXD9 1431 aa0.14□□□□□ -2.39
SMCHD1-209ENST00000583441 ZMYM4Q5VZL5 1548 aa0.14□□□□□ -2.39
SMCHD1-209ENST00000583441 ZNF815PA8K554 130 aa0.14□□□□□ -2.39
SMCHD1-209ENST00000583441 SSBP3-AS1Q7Z2R9 100 aa0.14□□□□□ -2.39
SMCHD1-209ENST00000583441 CELSR2Q9HCU4 2923 aa0.14□□□□□ -2.39
SMCHD1-209ENST00000583441 CFTRP13569 1480 aa0.14□□□□□ -2.39
SMCHD1-209ENST00000583441 PPP1R17O96001 155 aa0.13□□□□□ -2.39
SMCHD1-209ENST00000583441 CCL18P55774 89 aa0.13□□□□□ -2.39
SMCHD1-209ENST00000583441 BTG2P78543 158 aa0.13□□□□□ -2.39
SMCHD1-209ENST00000583441 Q6AWC8 147 aa0.13□□□□□ -2.39
SMCHD1-209ENST00000583441 C1orf54Q8WWF1 131 aa0.13□□□□□ -2.39
SMCHD1-209ENST00000583441 CNFNQ9BYD5 112 aa0.13□□□□□ -2.39
SMCHD1-209ENST00000583441 MYH6P13533 1939 aa0.13□□□□□ -2.39
SMCHD1-209ENST00000583441 NAIPQ13075 1403 aa0.13□□□□□ -2.39
SMCHD1-209ENST00000583441 PTPRZ1P23471 2315 aaPredicted RBP0.12□□□□□ -2.39
SMCHD1-209ENST00000583441 K7EP13 123 aa0.12□□□□□ -2.39
SMCHD1-209ENST00000583441 MEIG1Q5JSS6 88 aa0.12□□□□□ -2.39
SMCHD1-209ENST00000583441 C10orf128Q5T292 105 aa0.12□□□□□ -2.39
SMCHD1-209ENST00000583441 CFAP126Q5VTH2 177 aa0.12□□□□□ -2.39
SMCHD1-209ENST00000583441 CYP4F30PQ9H0H9 118 aa0.12□□□□□ -2.39
SMCHD1-209ENST00000583441 PARP14Q460N5 1801 aa0.11□□□□□ -2.39
SMCHD1-209ENST00000583441 GNG7O60262 68 aa0.11□□□□□ -2.39
SMCHD1-209ENST00000583441 RBM3P98179 157 aaKnown RBP0.11□□□□□ -2.39
SMCHD1-209ENST00000583441 Q8N8P6 123 aa0.11□□□□□ -2.39
SMCHD1-209ENST00000583441 SMIM4Q8WVI0 70 aa0.11□□□□□ -2.39
SMCHD1-209ENST00000583441 FAM107BQ9H098 131 aa0.11□□□□□ -2.39
SMCHD1-209ENST00000583441 LENEPQ9Y5L5 61 aa0.11□□□□□ -2.39
SMCHD1-209ENST00000583441 ZNF609O15014 1411 aa0.11□□□□□ -2.39
SMCHD1-209ENST00000583441 BICRAQ9NZM4 1560 aa0.11□□□□□ -2.39
SMCHD1-209ENST00000583441 FGF7P21781 194 aa0.1□□□□□ -2.39
SMCHD1-209ENST00000583441 Q56UQ5 140 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms