RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 ODF3Q96PU9 254 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 MGST2Q99735 147 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 TIMM9Q9Y5J7 89 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 DSCAML1Q8TD84 2053 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 NUP98P52948 1817 aa2.38□□□□□ -2.03
NUP88-208ENST00000574087 IGKV1-6A0A0C4DH72 117 aa2.37□□□□□ -2.03
NUP88-208ENST00000574087 CPSF4LA6NMK7 179 aaKnown RBP2.37□□□□□ -2.03
NUP88-208ENST00000574087 HMGN4O00479 90 aa2.37□□□□□ -2.03
NUP88-208ENST00000574087 CCL16O15467 120 aa2.37□□□□□ -2.03
NUP88-208ENST00000574087 IGKV1-39P01597 117 aa2.37□□□□□ -2.03
NUP88-208ENST00000574087 IGKV1D-39P04432 117 aa2.37□□□□□ -2.03
NUP88-208ENST00000574087 CCKP06307 115 aa2.37□□□□□ -2.03
NUP88-208ENST00000574087 RPL18Q07020 188 aaKnown RBP2.37□□□□□ -2.03
NUP88-208ENST00000574087 DAND5Q8N907 189 aa2.37□□□□□ -2.03
NUP88-208ENST00000574087 CHCHD1Q96BP2 118 aaKnown RBP2.37□□□□□ -2.03
NUP88-208ENST00000574087 TRGV9Q99603 122 aa2.37□□□□□ -2.03
NUP88-208ENST00000574087 OSTCQ9NRP0 149 aa2.37□□□□□ -2.03
NUP88-208ENST00000574087 TAS2R4Q9NYW5 299 aa2.37□□□□□ -2.03
NUP88-208ENST00000574087 PTPRBP23467 1997 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 IGHV3-72A0A0B4J1Y9 119 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 TRAV2A0A0B4J234 112 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 CTXND1A0A1B0GTU2 59 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 A0A1W2PQD3 144 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 C3orf84H3BNL1 204 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 CCL22O00626 93 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 LEPROTO15243 131 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 ASAH2BP0C7U1 165 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 PEBP1P30086 187 aaKnown RBP2.36□□□□□ -2.03
NUP88-208ENST00000574087 FUSP35637 526 aaKnown RBP eCLIP2.36□□□□□ -2.03
NUP88-208ENST00000574087 PCBD1P61457 104 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.36□□□□□ -2.03
NUP88-208ENST00000574087 FAM104BQ5XKR9 115 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 C2orf91Q6ZV80 131 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 FAM216BQ8N7L0 139 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 ZNF714Q96N38 554 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 FGF23Q9GZV9 251 aaPredicted RBP2.36□□□□□ -2.03
NUP88-208ENST00000574087 CYSTM1Q9H1C7 97 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 XAGE1AQ9HD64 81 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 C8orf17Q9NRJ1 99 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 MED12LQ86YW9 2145 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 COL18A1P39060 1754 aa2.36□□□□□ -2.03
NUP88-208ENST00000574087 SNRNP200O75643 2136 aaKnown RBP2.35□□□□□ -2.03
NUP88-208ENST00000574087 PLXNB3Q9ULL4 1909 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 C2orf70A6NJV1 201 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 LEPROTL1O95214 131 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 SAA1P0DJI8 122 aaPredicted RBP2.35□□□□□ -2.03
NUP88-208ENST00000574087 CXCL8P10145 99 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 CCL5P13501 91 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 IL9P15248 144 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 CIRBPQ14011 172 aaKnown RBP2.35□□□□□ -2.03
NUP88-208ENST00000574087 KISS1Q15726 138 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 Q1T7F1 81 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 RNASE13Q5GAN3 156 aaKnown RBP2.35□□□□□ -2.03
NUP88-208ENST00000574087 SOSTDC1Q6X4U4 206 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 C16orf47Q6ZP98 133 aaPredicted RBP2.35□□□□□ -2.03
NUP88-208ENST00000574087 MIR17HGQ75NE6 70 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 PDPNQ86YL7 162 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 MIR7-3HGQ8N6C7 128 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 SPTSSAQ969W0 71 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 Q96M85 177 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 NABP2Q9BQ15 211 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 C11orf1Q9H5F2 150 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 HIGD1BQ9P298 99 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 TANC2Q9HCD6 1990 aa2.35□□□□□ -2.03
NUP88-208ENST00000574087 IGHV3-43A0A0B4J1X8 118 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 TMEM14DPA8MWL7 114 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 F2Z2F3 143 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 IGLV3-25P01717 112 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 IGHV3-11P01762 117 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 ACYP1P07311 99 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 NPPCP23582 126 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 EFNA4P52798 201 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 SDIM1Q6ZPB5 146 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 LYZL2Q7Z4W2 148 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 FAM19A2Q8N3H0 131 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 WFDC6Q9BQY6 131 aa2.34□□□□□ -2.03
NUP88-208ENST00000574087 NXT2Q9NPJ8 142 aaKnown RBP2.34□□□□□ -2.03
NUP88-208ENST00000574087 LTBP4Q8N2S1 1624 aa2.34□□□□□ -2.04
NUP88-208ENST00000574087 EXPH5Q8NEV8 1989 aa2.34□□□□□ -2.04
NUP88-208ENST00000574087 DSCAMO60469 2012 aa2.34□□□□□ -2.04
NUP88-208ENST00000574087 TRPM6Q9BX84 2022 aa2.34□□□□□ -2.04
NUP88-208ENST00000574087 IGHV1-24A0A0C4DH33 117 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 NDUFC1O43677 76 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 BCE1O60756 84 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 PIRTP0C851 137 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 CGB3P0DN86 165 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 CGB7P0DN87 165 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 IGHV3-30-3P0DP02 117 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 CCL3P10147 92 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 SLC25A16P16260 332 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 CKS2P33552 79 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 RPL27AP46776 148 aaKnown RBP2.33□□□□□ -2.04
NUP88-208ENST00000574087 DSCR4P56555 118 aaPredicted RBP2.33□□□□□ -2.04
NUP88-208ENST00000574087 TSPEAR-AS2P59090 65 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 MRPL51Q4U2R6 128 aaKnown RBP2.33□□□□□ -2.04
NUP88-208ENST00000574087 DEFB121Q5J5C9 76 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 LYPD5Q6UWN5 251 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 ORMDL3Q8N138 153 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 ZFAND2AQ8N6M9 145 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 ST20-AS1Q8NBB2 130 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms