RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 ACTR3CQ9C0K3 210 aaPredicted RBP6.18□□□□□ -1.42
CIITA-208ENST00000572665 Q9HAA7 133 aa6.18□□□□□ -1.42
CIITA-208ENST00000572665 URGCP-MRPS24S4R325 110 aa6.18□□□□□ -1.42
CIITA-208ENST00000572665 LRCOL1A6NCL2 159 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 GGTLC3B5MD39 225 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 IGHV3-30P01768 117 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 IGHV3-33P01772 117 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 IGHV3-30-3P0DP02 117 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 IGHV3-30-5P0DP03 117 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 LGALSLQ3ZCW2 172 aaPredicted RBP6.17□□□□□ -1.42
CIITA-208ENST00000572665 LBHQ53QV2 105 aaPredicted RBP6.17□□□□□ -1.42
CIITA-208ENST00000572665 ZNF506Q5JVG8 444 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 KCNIP4Q6PIL6 250 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 PRNTQ86SH4 94 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 SUN5Q8TC36 379 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 EPDR1Q9UM22 224 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 LRP1BQ9NZR2 4599 aa6.17□□□□□ -1.42
CIITA-208ENST00000572665 IGHV3-73A0A0B4J1V6 119 aa6.16□□□□□ -1.42
CIITA-208ENST00000572665 A0A1W2PRE2 83 aa6.16□□□□□ -1.42
CIITA-208ENST00000572665 FABP5P3A8MUU1 101 aa6.16□□□□□ -1.42
CIITA-208ENST00000572665 EIF3GO75821 320 aaKnown RBP eCLIP6.16□□□□□ -1.42
CIITA-208ENST00000572665 ASIPP42127 132 aa6.16□□□□□ -1.42
CIITA-208ENST00000572665 TMUB2Q71RG4 321 aa6.16□□□□□ -1.42
CIITA-208ENST00000572665 STOML3Q8TAV4 291 aa6.16□□□□□ -1.42
CIITA-208ENST00000572665 KANTRA0A1W2PQU2 76 aa6.15□□□□□ -1.42
CIITA-208ENST00000572665 IFNA7P01567 189 aa6.15□□□□□ -1.42
CIITA-208ENST00000572665 SMR3BP02814 79 aaPredicted RBP6.15□□□□□ -1.42
CIITA-208ENST00000572665 RNASE3P12724 160 aaKnown RBP6.15□□□□□ -1.42
CIITA-208ENST00000572665 ZNF80P51504 273 aaPredicted RBP6.15□□□□□ -1.42
CIITA-208ENST00000572665 ELOBQ15370 118 aa6.15□□□□□ -1.42
CIITA-208ENST00000572665 C9orf62Q8N4C0 152 aa6.15□□□□□ -1.42
CIITA-208ENST00000572665 IL36BQ9NZH7 164 aa6.15□□□□□ -1.42
CIITA-208ENST00000572665 PFDN1O60925 122 aa6.14□□□□□ -1.43
CIITA-208ENST00000572665 ZNF726P1Q15940 193 aa6.14□□□□□ -1.43
CIITA-208ENST00000572665 KIAA1644Q3SXP7 199 aa6.14□□□□□ -1.43
CIITA-208ENST00000572665 DPPA3Q6W0C5 159 aa6.14□□□□□ -1.43
CIITA-208ENST00000572665 HIST1H2BAQ96A08 127 aa6.14□□□□□ -1.43
CIITA-208ENST00000572665 ZNF471Q9BX82 626 aaPredicted RBP6.14□□□□□ -1.43
CIITA-208ENST00000572665 PARLQ9H300 379 aa6.14□□□□□ -1.43
CIITA-208ENST00000572665 CTXND1A0A1B0GTU2 59 aa6.13□□□□□ -1.43
CIITA-208ENST00000572665 C5orf52A6NGY3 159 aa6.13□□□□□ -1.43
CIITA-208ENST00000572665 B4DEV8 164 aa6.13□□□□□ -1.43
CIITA-208ENST00000572665 TPT1P13693 172 aaKnown RBP6.13□□□□□ -1.43
CIITA-208ENST00000572665 EIF5AP63241 154 aaKnown RBP6.13□□□□□ -1.43
CIITA-208ENST00000572665 Q8N976 141 aa6.13□□□□□ -1.43
CIITA-208ENST00000572665 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.13□□□□□ -1.43
CIITA-208ENST00000572665 CHCHD7Q9BUK0 85 aa6.13□□□□□ -1.43
CIITA-208ENST00000572665 ZFP30Q9Y2G7 519 aa6.13□□□□□ -1.43
CIITA-208ENST00000572665 ARL2-SNX15V9GYD0 113 aa6.13□□□□□ -1.43
CIITA-208ENST00000572665 DNAH5Q8TE73 4624 aa6.13□□□□□ -1.43
CIITA-208ENST00000572665 A0A087WX48 190 aa6.12□□□□□ -1.43
CIITA-208ENST00000572665 IGKV3D-20A0A0C4DH25 116 aa6.12□□□□□ -1.43
CIITA-208ENST00000572665 UMAD1C9J7I0 102 aa6.12□□□□□ -1.43
CIITA-208ENST00000572665 PEX7O00628 323 aa6.12□□□□□ -1.43
CIITA-208ENST00000572665 UBE2G1P62253 170 aa6.12□□□□□ -1.43
CIITA-208ENST00000572665 DNLZQ5SXM8 178 aa6.12□□□□□ -1.43
CIITA-208ENST00000572665 AKR1C8PQ5T2L2 129 aa6.12□□□□□ -1.43
CIITA-208ENST00000572665 SLC51BQ86UW2 128 aa6.12□□□□□ -1.43
CIITA-208ENST00000572665 FMC1Q96HJ9 113 aa6.12□□□□□ -1.43
CIITA-208ENST00000572665 TCEAL7Q9BRU2 100 aa6.12□□□□□ -1.43
CIITA-208ENST00000572665 PHLDA3Q9Y5J5 127 aa6.12□□□□□ -1.43
CIITA-208ENST00000572665 TRBV10-1A0A0K0K1A3 114 aa6.11□□□□□ -1.43
CIITA-208ENST00000572665 LINC00694P0DN24 101 aa6.11□□□□□ -1.43
CIITA-208ENST00000572665 PKIAP61925 76 aa6.11□□□□□ -1.43
CIITA-208ENST00000572665 Q0VG73 95 aa6.11□□□□□ -1.43
CIITA-208ENST00000572665 C14orf177Q52M58 125 aa6.11□□□□□ -1.43
CIITA-208ENST00000572665 FAM162BQ5T6X4 162 aa6.11□□□□□ -1.43
CIITA-208ENST00000572665 FAM74A4Q5TZK3 123 aa6.11□□□□□ -1.43
CIITA-208ENST00000572665 ZFP82Q8N141 532 aa6.11□□□□□ -1.43
CIITA-208ENST00000572665 LINC00479Q96M42 142 aa6.11□□□□□ -1.43
CIITA-208ENST00000572665 APOBP04114 4563 aaKnown RBP6.11□□□□□ -1.43
CIITA-208ENST00000572665 RBFOX3A6NFN3 312 aa6.1□□□□□ -1.43
CIITA-208ENST00000572665 H3BVH4 76 aa6.1□□□□□ -1.43
CIITA-208ENST00000572665 ARMS2P0C7Q2 107 aa6.1□□□□□ -1.43
CIITA-208ENST00000572665 FHITP49789 147 aa6.1□□□□□ -1.43
CIITA-208ENST00000572665 NKX2-5P52952 324 aaPredicted RBP6.1□□□□□ -1.43
CIITA-208ENST00000572665 UBE2G2P60604 165 aa6.1□□□□□ -1.43
CIITA-208ENST00000572665 EIF5AL1Q6IS14 154 aaKnown RBP6.1□□□□□ -1.43
CIITA-208ENST00000572665 DAZ4Q86SG3 579 aaKnown RBP6.1□□□□□ -1.43
CIITA-208ENST00000572665 Q86TA4 180 aa6.1□□□□□ -1.43
CIITA-208ENST00000572665 DEFB104AQ8WTQ1 72 aa6.1□□□□□ -1.43
CIITA-208ENST00000572665 DAZ3Q9NR90 486 aaKnown RBP6.1□□□□□ -1.43
CIITA-208ENST00000572665 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.09□□□□□ -1.43
CIITA-208ENST00000572665 IGKV2D-24A0A075B6R9 120 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 MAP1LC3B2A6NCE7 125 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 FAM74A7A6NL05 159 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 KRBOX1C9JBD0 128 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 S100A9P06702 114 aaKnown RBP6.09□□□□□ -1.43
CIITA-208ENST00000572665 RAB5CP51148 216 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 HAMPP81172 84 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 UFSP1Q6NVU6 142 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 Q6ZSA8 131 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 COX8CQ7Z4L0 72 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 NIT1Q86X76 327 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 MBD3L1Q8WWY6 194 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 SFRP2Q96HF1 295 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 MAP1LC3BQ9GZQ8 125 aa6.09□□□□□ -1.43
CIITA-208ENST00000572665 DMBT1Q9UGM3 2413 aaPredicted RBP6.09□□□□□ -1.43
CIITA-208ENST00000572665 TRBV7-3A0A075B6L6 115 aa6.08□□□□□ -1.44
CIITA-208ENST00000572665 A0A087WYN8 130 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms