RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 GFRA4Q9GZZ7 299 aa12.12□□□□□ -0.47
NUP88-203ENST00000572019 hDV102S1A0JD36 115 aa12.11□□□□□ -0.47
NUP88-203ENST00000572019 PHOX2AO14813 284 aa12.11□□□□□ -0.47
NUP88-203ENST00000572019 SSTP61278 116 aa12.11□□□□□ -0.47
NUP88-203ENST00000572019 SPACA4Q8TDM5 124 aa12.11□□□□□ -0.47
NUP88-203ENST00000572019 FMC1Q96HJ9 113 aa12.11□□□□□ -0.47
NUP88-203ENST00000572019 VAX2Q9UIW0 290 aa12.11□□□□□ -0.47
NUP88-203ENST00000572019 TRBV6-1A0A0K0K1D8 114 aa12.1□□□□□ -0.47
NUP88-203ENST00000572019 UBE2G1P62253 170 aa12.1□□□□□ -0.47
NUP88-203ENST00000572019 C20orf203Q8NBC4 194 aa12.1□□□□□ -0.47
NUP88-203ENST00000572019 DERL1Q9BUN8 251 aa12.1□□□□□ -0.47
NUP88-203ENST00000572019 KIF25-AS1Q9Y6Z4 181 aa12.1□□□□□ -0.47
NUP88-203ENST00000572019 RAB5CP51148 216 aa12.09□□□□□ -0.47
NUP88-203ENST00000572019 REG3AQ06141 175 aa12.09□□□□□ -0.47
NUP88-203ENST00000572019 F5H697 171 aa12.08□□□□□ -0.48
NUP88-203ENST00000572019 CLRN3Q8NCR9 226 aa12.08□□□□□ -0.48
NUP88-203ENST00000572019 IGLV4-60A0A075B6I1 120 aa12.07□□□□□ -0.48
NUP88-203ENST00000572019 SNAI2O43623 268 aa12.07□□□□□ -0.48
NUP88-203ENST00000572019 DPH3Q96FX2 82 aa12.07□□□□□ -0.48
NUP88-203ENST00000572019 SSBP4Q9BWG4 385 aaPredicted RBP12.07□□□□□ -0.48
NUP88-203ENST00000572019 ZNF471Q9BX82 626 aaPredicted RBP12.07□□□□□ -0.48
NUP88-203ENST00000572019 NKX6-2Q9C056 277 aaPredicted RBP12.07□□□□□ -0.48
NUP88-203ENST00000572019 TRBV25-1A0A075B6N4 114 aa12.06□□□□□ -0.48
NUP88-203ENST00000572019 IGHV3-64A0A075B6Q5 118 aa12.06□□□□□ -0.48
NUP88-203ENST00000572019 MAP1LC3B2A6NCE7 125 aa12.06□□□□□ -0.48
NUP88-203ENST00000572019 PKIAP61925 76 aa12.06□□□□□ -0.48
NUP88-203ENST00000572019 IQCJQ1A5X6 159 aa12.06□□□□□ -0.48
NUP88-203ENST00000572019 INO80EQ8NBZ0 244 aaPredicted RBP12.06□□□□□ -0.48
NUP88-203ENST00000572019 LINC01600Q96MT4 127 aa12.06□□□□□ -0.48
NUP88-203ENST00000572019 MAP1LC3BQ9GZQ8 125 aa12.06□□□□□ -0.48
NUP88-203ENST00000572019 PLAC8Q9NZF1 115 aa12.06□□□□□ -0.48
NUP88-203ENST00000572019 AKR1C3P42330 323 aa12.05□□□□□ -0.48
NUP88-203ENST00000572019 CST9LP1Q5W188 147 aa12.05□□□□□ -0.48
NUP88-203ENST00000572019 FHITP49789 147 aa12.04□□□□□ -0.48
NUP88-203ENST00000572019 OR5AL1P0C617 328 aa12.03□□□□□ -0.48
NUP88-203ENST00000572019 DEFA1P59665 94 aa12.03□□□□□ -0.48
NUP88-203ENST00000572019 AKR1C8PQ5T2L2 129 aa12.03□□□□□ -0.48
NUP88-203ENST00000572019 SPANXN1Q5VSR9 72 aa12.03□□□□□ -0.48
NUP88-203ENST00000572019 C15orf56Q8N910 161 aa12.03□□□□□ -0.48
NUP88-203ENST00000572019 RNF185Q96GF1 192 aa12.03□□□□□ -0.48
NUP88-203ENST00000572019 MLST8Q9BVC4 326 aa12.03□□□□□ -0.48
NUP88-203ENST00000572019 IGHV1-24A0A0C4DH33 117 aa12.02□□□□□ -0.49
NUP88-203ENST00000572019 M0QY20 66 aa12.02□□□□□ -0.49
NUP88-203ENST00000572019 PAGE4O60829 102 aa12.02□□□□□ -0.49
NUP88-203ENST00000572019 CXCL1P09341 107 aa12.02□□□□□ -0.49
NUP88-203ENST00000572019 PRR3P79522 188 aaKnown RBP12.02□□□□□ -0.49
NUP88-203ENST00000572019 COX6A2Q02221 97 aa12.02□□□□□ -0.49
NUP88-203ENST00000572019 TMEM97Q5BJF2 176 aa12.02□□□□□ -0.49
NUP88-203ENST00000572019 FXYD6-FXYD2A0A087WZ82 144 aa12.01□□□□□ -0.49
NUP88-203ENST00000572019 BORCS7-ASMTA0A0B4J1R7 106 aa12.01□□□□□ -0.49
NUP88-203ENST00000572019 SCO2A0A1W2PP80 73 aa12.01□□□□□ -0.49
NUP88-203ENST00000572019 A6NHS1 94 aa12.01□□□□□ -0.49
NUP88-203ENST00000572019 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.01□□□□□ -0.49
NUP88-203ENST00000572019 PRSS3P2Q8NHM4 247 aa12.01□□□□□ -0.49
NUP88-203ENST00000572019 STOML3Q8TAV4 291 aa12□□□□□ -0.49
NUP88-203ENST00000572019 CYTL1Q9NRR1 136 aa12□□□□□ -0.49
NUP88-203ENST00000572019 AP5S1Q9NUS5 200 aa12□□□□□ -0.49
NUP88-203ENST00000572019 IGKV2-24A0A0C4DH68 120 aa11.99□□□□□ -0.49
NUP88-203ENST00000572019 G3V3Q6 166 aa11.99□□□□□ -0.49
NUP88-203ENST00000572019 MGPP08493 103 aa11.99□□□□□ -0.49
NUP88-203ENST00000572019 GZMBP10144 247 aa11.99□□□□□ -0.49
NUP88-203ENST00000572019 KRTAP10-8P60410 259 aa11.99□□□□□ -0.49
NUP88-203ENST00000572019 SUMO4Q6EEV6 95 aa11.99□□□□□ -0.49
NUP88-203ENST00000572019 GTSF1Q8WW33 167 aa11.99□□□□□ -0.49
NUP88-203ENST00000572019 MED28Q9H204 178 aa11.99□□□□□ -0.49
NUP88-203ENST00000572019 DPH3P1Q9H4G8 78 aa11.99□□□□□ -0.49
NUP88-203ENST00000572019 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.98□□□□□ -0.49
NUP88-203ENST00000572019 TRAV8-4A0A0B4J246 113 aa11.98□□□□□ -0.49
NUP88-203ENST00000572019 A0A1B0GV50 99 aa11.98□□□□□ -0.49
NUP88-203ENST00000572019 P01737 135 aa11.98□□□□□ -0.49
NUP88-203ENST00000572019 NKX2-5P52952 324 aaPredicted RBP11.98□□□□□ -0.49
NUP88-203ENST00000572019 MAJINQ3KP22 176 aa11.98□□□□□ -0.49
NUP88-203ENST00000572019 HIGD2BQ4VC39 106 aa11.98□□□□□ -0.49
NUP88-203ENST00000572019 LYPD6BQ8NI32 183 aa11.98□□□□□ -0.49
NUP88-203ENST00000572019 C7orf33Q8WU49 177 aa11.98□□□□□ -0.49
NUP88-203ENST00000572019 AP1S3Q96PC3 154 aa11.98□□□□□ -0.49
NUP88-203ENST00000572019 TCEAL7Q9BRU2 100 aa11.98□□□□□ -0.49
NUP88-203ENST00000572019 A0A0J9YXV3 536 aa11.97□□□□□ -0.49
NUP88-203ENST00000572019 A0A1B0GUV1 79 aa11.97□□□□□ -0.49
NUP88-203ENST00000572019 WDR73Q6P4I2 378 aa11.97□□□□□ -0.49
NUP88-203ENST00000572019 BAGE2Q86Y30 109 aa11.97□□□□□ -0.49
NUP88-203ENST00000572019 TMEM243Q9BU79 118 aa11.97□□□□□ -0.49
NUP88-203ENST00000572019 LPAP08519 4548 aa11.97□□□□□ -0.49
NUP88-203ENST00000572019 GAGE12HA6NDE8 117 aa11.96□□□□□ -0.49
NUP88-203ENST00000572019 GIPP09681 153 aaPredicted RBP11.96□□□□□ -0.49
NUP88-203ENST00000572019 SMIM17P0DL12 118 aa11.96□□□□□ -0.49
NUP88-203ENST00000572019 GAS8-AS1O95177 125 aa11.95□□□□□ -0.5
NUP88-203ENST00000572019 STPG4Q8N801 248 aa11.95□□□□□ -0.5
NUP88-203ENST00000572019 A0A096LNI7 61 aa11.94□□□□□ -0.5
NUP88-203ENST00000572019 IGKV3OR2-268A0A0C4DH90 116 aa11.94□□□□□ -0.5
NUP88-203ENST00000572019 NDUFS6O75380 124 aaKnown RBP11.93□□□□□ -0.5
NUP88-203ENST00000572019 IGLC6P0CF74 106 aa11.93□□□□□ -0.5
NUP88-203ENST00000572019 RPS10P46783 165 aaKnown RBP11.93□□□□□ -0.5
NUP88-203ENST00000572019 TPPP3Q9BW30 176 aa11.93□□□□□ -0.5
NUP88-203ENST00000572019 SULT1A2P50226 295 aa11.92□□□□□ -0.5
NUP88-203ENST00000572019 S100A9P06702 114 aaKnown RBP11.91□□□□□ -0.5
NUP88-203ENST00000572019 ARPC5O15511 151 aa11.9□□□□□ -0.5
NUP88-203ENST00000572019 RASL11AQ6T310 242 aa11.9□□□□□ -0.5
NUP88-203ENST00000572019 TMUB2Q71RG4 321 aa11.9□□□□□ -0.5
NUP88-203ENST00000572019 FER1L6-AS1Q8NA97 138 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms