RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 C2orf66Q6UXQ4 117 aa6.54□□□□□ -1.36
LINC00558-201ENST00000569422 FAM19A1Q7Z5A9 133 aa6.54□□□□□ -1.36
LINC00558-201ENST00000569422 IGHV3-73A0A0B4J1V6 119 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 GAGE12JA6NER3 117 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 GAGE7O76087 117 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 OXTP01178 125 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 GAGE12FP0CL80 117 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 GAGE12GP0CL81 117 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 GAGE12IP0CL82 117 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 RPL35AP18077 110 aaKnown RBP6.53□□□□□ -1.36
LINC00558-201ENST00000569422 GAGE4Q13068 117 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 MAPKAPK5-AS1Q8N8E1 139 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 A6NDN8 102 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 PRSS29PA6NIE9 313 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 KNCNA6PVL3 124 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 ZNF56Q15929 161 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 FXYD2P54710 66 aa6.53□□□□□ -1.36
LINC00558-201ENST00000569422 TRBV25-1A0A075B6N4 114 aa6.52□□□□□ -1.37
LINC00558-201ENST00000569422 DUSP14O95147 198 aaKnown RBP6.52□□□□□ -1.37
LINC00558-201ENST00000569422 RPL39P62891 51 aaKnown RBP6.52□□□□□ -1.37
LINC00558-201ENST00000569422 ORMDL2Q53FV1 153 aa6.52□□□□□ -1.37
LINC00558-201ENST00000569422 Q8N1Y9 231 aa6.52□□□□□ -1.37
LINC00558-201ENST00000569422 FAM19A4Q96LR4 140 aa6.52□□□□□ -1.37
LINC00558-201ENST00000569422 Q96MF0 132 aa6.52□□□□□ -1.37
LINC00558-201ENST00000569422 CHAC1Q9BUX1 264 aa6.52□□□□□ -1.37
LINC00558-201ENST00000569422 K7EMT4 169 aa6.52□□□□□ -1.37
LINC00558-201ENST00000569422 IGHV4-31P0DP07 118 aa6.52□□□□□ -1.37
LINC00558-201ENST00000569422 SEC11AP67812 179 aa6.52□□□□□ -1.37
LINC00558-201ENST00000569422 SUMO4Q6EEV6 95 aa6.52□□□□□ -1.37
LINC00558-201ENST00000569422 NHP2Q9NX24 153 aaKnown RBP6.52□□□□□ -1.37
LINC00558-201ENST00000569422 ACANP16112 2415 aa6.52□□□□□ -1.37
LINC00558-201ENST00000569422 NF1P21359 2839 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 LINC01546A6NGU7 62 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 KLLNB2CW77 178 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 XGP55808 180 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 ZFAND6Q6FIF0 208 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 MUC4Q99102 2169 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 A0A096LNT2 108 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 A0A0J9YX75 114 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 ZNF843Q8N446 348 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 TMEM86BQ8N661 226 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 CDIP1Q9H305 208 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 ZNF702PQ9H963 129 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 TP53TG1Q9Y2A0 90 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 MTORP42345 2549 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 H7C1H1 209 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 DEFB131AP59861 70 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 TMEM101Q96IK0 257 aa6.51□□□□□ -1.37
LINC00558-201ENST00000569422 LGALS1P09382 135 aaKnown RBP6.5□□□□□ -1.37
LINC00558-201ENST00000569422 ZNRF2Q8NHG8 242 aa6.5□□□□□ -1.37
LINC00558-201ENST00000569422 SDHAF1A6NFY7 115 aa6.5□□□□□ -1.37
LINC00558-201ENST00000569422 F8VRH5 84 aa6.5□□□□□ -1.37
LINC00558-201ENST00000569422 ZNF876PQ49A33 203 aa6.5□□□□□ -1.37
LINC00558-201ENST00000569422 Q6YL49 198 aa6.5□□□□□ -1.37
LINC00558-201ENST00000569422 TOMM6Q96B49 74 aa6.5□□□□□ -1.37
LINC00558-201ENST00000569422 HIST1H4GQ99525 98 aa6.5□□□□□ -1.37
LINC00558-201ENST00000569422 C20orf78Q9BR46 151 aa6.5□□□□□ -1.37
LINC00558-201ENST00000569422 K7EQG2 157 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 NHLRC4P0CG21 123 aaPredicted RBP6.49□□□□□ -1.37
LINC00558-201ENST00000569422 UFSP1Q6NVU6 142 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 FOXI2Q6ZQN5 318 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 OPRPNQ99935 248 aaPredicted RBP6.49□□□□□ -1.37
LINC00558-201ENST00000569422 C9orf118A6NHY6 69 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 SMIM13P0DJ93 91 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 LINC00315P59091 139 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 KLHL30-AS1Q8NEE0 82 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 KIR2DL4Q99706 377 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 CYSLTR1Q9Y271 337 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 CHD6Q8TD26 2715 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 IGHV1OR15-1A0A075B7D0 117 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 IGHV3-16A0A0C4DH30 117 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 H3BRM9 83 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 PLNP26678 52 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 DEFB113Q30KQ7 82 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 KIF25-AS1Q9Y6Z4 181 aa6.49□□□□□ -1.37
LINC00558-201ENST00000569422 FASNP49327 2511 aaKnown RBP6.48□□□□□ -1.37
LINC00558-201ENST00000569422 HLA-DRB4P13762 266 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 NEXN-AS1Q8NBZ9 246 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 HLA-DRB4X5D2U9 266 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 APCP25054 2843 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 LOC107984640A0A0U1RRK4 108 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 J3KT08 172 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 ELANEP08246 267 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 P0DMU3 169 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 FAM231AP0DMU4 169 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 FAM231CP0DMU5 169 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 PROK1P58294 105 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 SFTA2Q6UW10 78 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 SCGB1D4Q6XE38 83 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 ZFP2Q6ZN57 461 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 UBE2E2Q96LR5 201 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 SPCS1Q9Y6A9 102 aa6.48□□□□□ -1.37
LINC00558-201ENST00000569422 UBR5O95071 2799 aaPredicted RBP6.48□□□□□ -1.37
LINC00558-201ENST00000569422 IGHV3-64A0A075B6Q5 118 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 IGHV3OR16-12A0A075B7B8 117 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 TMEM170BQ5T4T1 132 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 NOTCH2Q04721 2471 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 FLNAP21333 2647 aaKnown RBP6.47□□□□□ -1.37
LINC00558-201ENST00000569422 CCDC179H3BU77 68 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 RBMY1A1P0DJD3 496 aaKnown RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms