RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SPTBN4Q9H254 2564 aa8.21□□□□□ -1.09
CLK3-226ENST00000569406 NRACQ8N912 160 aa8.21□□□□□ -1.09
CLK3-226ENST00000569406 FAM110DQ8TAY7 271 aaPredicted RBP8.21□□□□□ -1.09
CLK3-226ENST00000569406 RNF185Q96GF1 192 aa8.21□□□□□ -1.09
CLK3-226ENST00000569406 IGF2RP11717 2491 aa8.21□□□□□ -1.09
CLK3-226ENST00000569406 LOXP28300 417 aaPredicted RBP8.21□□□□□ -1.1
CLK3-226ENST00000569406 DAZ4Q86SG3 579 aaKnown RBP8.21□□□□□ -1.1
CLK3-226ENST00000569406 DAZ1Q9NQZ3 744 aaKnown RBP8.21□□□□□ -1.1
CLK3-226ENST00000569406 C2CD3Q4AC94 2353 aa8.21□□□□□ -1.1
CLK3-226ENST00000569406 LYPD2Q6UXB3 125 aa8.21□□□□□ -1.1
CLK3-226ENST00000569406 NCOR2Q9Y618 2525 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 ARHGAP32A7KAX9 2087 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 IGHV3OR16-13A0A075B7E8 117 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 IGHV3-74A0A0B4J1X5 117 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 C4orf48Q5BLP8 95 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 ZNF833PQ6ZTB9 187 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 C20orf197Q8N268 126 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 UBE2E1P51965 193 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 SERP1Q9Y6X1 66 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 IGHV3-23P01764 117 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 LGALS3P17931 250 aaKnown RBP8.2□□□□□ -1.1
CLK3-226ENST00000569406 RUSC1-AS1Q66K80 236 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 TMEM200BQ69YZ2 307 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 ICOSQ9Y6W8 199 aa8.2□□□□□ -1.1
CLK3-226ENST00000569406 TRAV12-1A0A0B4J245 112 aa8.19□□□□□ -1.1
CLK3-226ENST00000569406 USP17L23D6RBM5 183 aa8.19□□□□□ -1.1
CLK3-226ENST00000569406 DEFB121Q5J5C9 76 aa8.19□□□□□ -1.1
CLK3-226ENST00000569406 SLC50A1Q9BRV3 221 aa8.19□□□□□ -1.1
CLK3-226ENST00000569406 LINC00474Q9P2X8 69 aa8.19□□□□□ -1.1
CLK3-226ENST00000569406 SORL1Q92673 2214 aa8.19□□□□□ -1.1
CLK3-226ENST00000569406 SMIM26A0A096LP01 95 aa8.19□□□□□ -1.1
CLK3-226ENST00000569406 TRBV30A0A0K0K1B3 111 aa8.19□□□□□ -1.1
CLK3-226ENST00000569406 FSTL3O95633 263 aa8.19□□□□□ -1.1
CLK3-226ENST00000569406 WT1-ASQ06250 92 aa8.19□□□□□ -1.1
CLK3-226ENST00000569406 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.18□□□□□ -1.1
CLK3-226ENST00000569406 KNCNA6PVL3 124 aa8.18□□□□□ -1.1
CLK3-226ENST00000569406 FP248Q71RG6 208 aaPredicted RBP8.18□□□□□ -1.1
CLK3-226ENST00000569406 C16orf95Q9H693 158 aa8.18□□□□□ -1.1
CLK3-226ENST00000569406 CSPG4Q6UVK1 2322 aa8.18□□□□□ -1.1
CLK3-226ENST00000569406 IGLV2-23P01705 113 aa8.18□□□□□ -1.1
CLK3-226ENST00000569406 HIST1H4AP62805 103 aaKnown RBP8.18□□□□□ -1.1
CLK3-226ENST00000569406 ORMDL2Q53FV1 153 aa8.18□□□□□ -1.1
CLK3-226ENST00000569406 S100A7L2Q5SY68 101 aa8.18□□□□□ -1.1
CLK3-226ENST00000569406 CRYBG3Q68DQ2 2970 aa8.18□□□□□ -1.1
CLK3-226ENST00000569406 GP9P14770 177 aa8.18□□□□□ -1.1
CLK3-226ENST00000569406 RBM3P98179 157 aaKnown RBP8.18□□□□□ -1.1
CLK3-226ENST00000569406 TMEM75Q8N9X5 138 aa8.18□□□□□ -1.1
CLK3-226ENST00000569406 MRPL36Q9P0J6 103 aaKnown RBP8.18□□□□□ -1.1
CLK3-226ENST00000569406 CHD8Q9HCK8 2581 aa8.18□□□□□ -1.1
CLK3-226ENST00000569406 IGHV3-64A0A075B6Q5 118 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 E7EQL1 145 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 LYNX1G3V0Z9 82 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 LYNX1P0DP58 116 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 TSPEAR-AS2P59090 65 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 DEFB104AQ8WTQ1 72 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 PSMB8P28062 276 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 IGFL4Q6B9Z1 124 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 MPLKIPQ8TAP9 179 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 U3KQE9 123 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 TMEM223A0PJW6 202 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 C11orf86A6NJI1 115 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 FAM223BA6NKX1 122 aa8.17□□□□□ -1.1
CLK3-226ENST00000569406 EGR2P11161 476 aaPredicted RBP8.16□□□□□ -1.1
CLK3-226ENST00000569406 Q6ZSV7 163 aa8.16□□□□□ -1.1
CLK3-226ENST00000569406 LINC01600Q96MT4 127 aa8.16□□□□□ -1.1
CLK3-226ENST00000569406 TIMM21Q9BVV7 248 aa8.16□□□□□ -1.1
CLK3-226ENST00000569406 IGHV3-49A0A0A0MS15 119 aa8.16□□□□□ -1.1
CLK3-226ENST00000569406 NDUFA4L2Q9NRX3 87 aa8.16□□□□□ -1.1
CLK3-226ENST00000569406 IGLV2-18A0A075B6J9 118 aa8.16□□□□□ -1.1
CLK3-226ENST00000569406 LINC01546A6NGU7 62 aa8.16□□□□□ -1.1
CLK3-226ENST00000569406 GRNP28799 593 aaKnown RBP8.16□□□□□ -1.1
CLK3-226ENST00000569406 RNASE6Q93091 150 aaKnown RBP8.16□□□□□ -1.1
CLK3-226ENST00000569406 IGKV1D-37A0A075B6S9 117 aa8.15□□□□□ -1.1
CLK3-226ENST00000569406 GFRALQ6UXV0 394 aa8.15□□□□□ -1.1
CLK3-226ENST00000569406 IGKV3-7A0A075B6H7 116 aa8.15□□□□□ -1.1
CLK3-226ENST00000569406 IGHV3-66A0A0C4DH42 116 aa8.15□□□□□ -1.1
CLK3-226ENST00000569406 TRBV19A0A075B6N1 114 aa8.15□□□□□ -1.11
CLK3-226ENST00000569406 LST1O00453 97 aa8.15□□□□□ -1.11
CLK3-226ENST00000569406 TIMM17BO60830 172 aa8.15□□□□□ -1.11
CLK3-226ENST00000569406 RPL11P62913 178 aaKnown RBP8.14□□□□□ -1.11
CLK3-226ENST00000569406 Q8TAT8 98 aa8.14□□□□□ -1.11
CLK3-226ENST00000569406 KAAG1Q9UBP8 84 aa8.14□□□□□ -1.11
CLK3-226ENST00000569406 RBMY1BA6NDE4 496 aaKnown RBP8.14□□□□□ -1.11
CLK3-226ENST00000569406 RBMY1EA6NEQ0 496 aaKnown RBP8.14□□□□□ -1.11
CLK3-226ENST00000569406 RBMY1DP0C7P1 496 aaKnown RBP8.14□□□□□ -1.11
CLK3-226ENST00000569406 RBMY1A1P0DJD3 496 aaKnown RBP8.14□□□□□ -1.11
CLK3-226ENST00000569406 RBMY1CP0DJD4 496 aa8.14□□□□□ -1.11
CLK3-226ENST00000569406 RBMY1FQ15415 496 aaKnown RBP8.14□□□□□ -1.11
CLK3-226ENST00000569406 DYNAPQ8N1N2 210 aa8.14□□□□□ -1.11
CLK3-226ENST00000569406 DAZ2Q13117 558 aaKnown RBP8.14□□□□□ -1.11
CLK3-226ENST00000569406 DAZ3Q9NR90 486 aaKnown RBP8.14□□□□□ -1.11
CLK3-226ENST00000569406 TRGV3P03979 118 aa8.13□□□□□ -1.11
CLK3-226ENST00000569406 PVRIGQ6DKI7 326 aa8.13□□□□□ -1.11
CLK3-226ENST00000569406 C2orf66Q6UXQ4 117 aa8.13□□□□□ -1.11
CLK3-226ENST00000569406 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.13□□□□□ -1.11
CLK3-226ENST00000569406 SNRPD3P62318 126 aaKnown RBP8.13□□□□□ -1.11
CLK3-226ENST00000569406 TMEM30BQ3MIR4 351 aa8.13□□□□□ -1.11
CLK3-226ENST00000569406 CFAP46Q8IYW2 2715 aa8.12□□□□□ -1.11
CLK3-226ENST00000569406 GHRHP01286 108 aa8.12□□□□□ -1.11
CLK3-226ENST00000569406 MAP1AP78559 2803 aaPredicted RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms