RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 MUSTN1Q8IVN3 82 aa10.85□□□□□ -0.67
VPS35-210ENST00000568784 CLUHP3Q96NS8 147 aa10.85□□□□□ -0.67
VPS35-210ENST00000568784 IGHV3-38A0A0C4DH36 116 aa10.85□□□□□ -0.67
VPS35-210ENST00000568784 SMCPP49901 116 aaPredicted RBP10.85□□□□□ -0.67
VPS35-210ENST00000568784 PRO0461Q9UI25 63 aa10.84□□□□□ -0.67
VPS35-210ENST00000568784 TEN1Q86WV5 123 aa10.84□□□□□ -0.67
VPS35-210ENST00000568784 NTN5Q8WTR8 489 aaPredicted RBP10.84□□□□□ -0.67
VPS35-210ENST00000568784 ZNF625Q96I27 306 aaPredicted RBP10.84□□□□□ -0.67
VPS35-210ENST00000568784 ANAPC13Q9BS18 74 aa10.84□□□□□ -0.67
VPS35-210ENST00000568784 IGLV4-69A0A075B6H9 119 aa10.84□□□□□ -0.67
VPS35-210ENST00000568784 TRAV8-3A0A0A6YYJ7 113 aa10.84□□□□□ -0.67
VPS35-210ENST00000568784 TMEM141Q96I45 108 aa10.83□□□□□ -0.68
VPS35-210ENST00000568784 SPATA25Q9BR10 227 aa10.83□□□□□ -0.68
VPS35-210ENST00000568784 TNFRSF18Q9Y5U5 241 aa10.83□□□□□ -0.68
VPS35-210ENST00000568784 IGHV3-16A0A0C4DH30 117 aa10.83□□□□□ -0.68
VPS35-210ENST00000568784 UCNP55089 124 aa10.83□□□□□ -0.68
VPS35-210ENST00000568784 XGP55808 180 aa10.83□□□□□ -0.68
VPS35-210ENST00000568784 FN1P02751 2386 aaKnown RBP10.82□□□□□ -0.68
VPS35-210ENST00000568784 PKD1L2Q7Z442 2459 aa10.82□□□□□ -0.68
VPS35-210ENST00000568784 NRGNQ92686 78 aa10.82□□□□□ -0.68
VPS35-210ENST00000568784 DUX3Q96PT4 197 aa10.82□□□□□ -0.68
VPS35-210ENST00000568784 ABCA2Q9BZC7 2435 aa10.82□□□□□ -0.68
VPS35-210ENST00000568784 PRSS47A8MTI9 375 aa10.82□□□□□ -0.68
VPS35-210ENST00000568784 NBL1P41271 181 aa10.82□□□□□ -0.68
VPS35-210ENST00000568784 HIST2H2BDQ6DRA6 164 aa10.82□□□□□ -0.68
VPS35-210ENST00000568784 PRRC2AP48634 2157 aaKnown RBP10.82□□□□□ -0.68
VPS35-210ENST00000568784 CRIP2P52943 208 aaPredicted RBP10.82□□□□□ -0.68
VPS35-210ENST00000568784 TEX29Q8N6K0 151 aa10.82□□□□□ -0.68
VPS35-210ENST00000568784 IGHV1OR15-1A0A075B7D0 117 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 A8MZ25 164 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 UBE2D1P51668 147 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 PROK1P58294 105 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 Q6ZUT4 128 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 DAND5Q8N907 189 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 IGIPA6NJ69 53 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 SNCGO76070 127 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 POLR2KP53803 58 aaKnown RBP10.81□□□□□ -0.68
VPS35-210ENST00000568784 TIMM21Q9BVV7 248 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 TRBV20-1A0A075B6N2 111 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 IGHV3-30P01768 117 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 IGHV4-59P01825 116 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 IGHV3-30-5P0DP03 117 aa10.81□□□□□ -0.68
VPS35-210ENST00000568784 IGHV4-30-2A0A087WSY4 118 aa10.8□□□□□ -0.68
VPS35-210ENST00000568784 SCGB1A1P11684 91 aa10.8□□□□□ -0.68
VPS35-210ENST00000568784 SLC25A29Q8N8R3 303 aa10.8□□□□□ -0.68
VPS35-210ENST00000568784 SOCS3O14543 225 aa10.8□□□□□ -0.68
VPS35-210ENST00000568784 COX6B1P14854 86 aa10.8□□□□□ -0.68
VPS35-210ENST00000568784 DEFB136Q30KP8 78 aa10.8□□□□□ -0.68
VPS35-210ENST00000568784 IGHG2P01859 326 aa10.79□□□□□ -0.68
VPS35-210ENST00000568784 CRYBA4P53673 196 aa10.79□□□□□ -0.68
VPS35-210ENST00000568784 EPG5Q9HCE0 2579 aa10.79□□□□□ -0.68
VPS35-210ENST00000568784 CUBNO60494 3623 aa10.79□□□□□ -0.68
VPS35-210ENST00000568784 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.79□□□□□ -0.68
VPS35-210ENST00000568784 IGKV2-29A2NJV5 120 aaPredicted RBP10.79□□□□□ -0.68
VPS35-210ENST00000568784 RNF223E7ERA6 249 aa10.79□□□□□ -0.68
VPS35-210ENST00000568784 ZFAND6Q6FIF0 208 aa10.79□□□□□ -0.68
VPS35-210ENST00000568784 TIMM17AQ99595 171 aa10.79□□□□□ -0.68
VPS35-210ENST00000568784 BSNQ9UPA5 3926 aa10.79□□□□□ -0.68
VPS35-210ENST00000568784 I3L3M4 83 aa10.79□□□□□ -0.68
VPS35-210ENST00000568784 DEFB131AP59861 70 aa10.79□□□□□ -0.68
VPS35-210ENST00000568784 CARD19Q96LW7 228 aa10.78□□□□□ -0.68
VPS35-210ENST00000568784 MTORP42345 2549 aa10.78□□□□□ -0.68
VPS35-210ENST00000568784 TTC32Q5I0X7 151 aa10.78□□□□□ -0.68
VPS35-210ENST00000568784 LINC00315P59091 139 aa10.77□□□□□ -0.68
VPS35-210ENST00000568784 CDIP1Q9H305 208 aa10.77□□□□□ -0.68
VPS35-210ENST00000568784 COX6CP09669 75 aa10.77□□□□□ -0.69
VPS35-210ENST00000568784 C11orf44Q8N8P7 122 aa10.77□□□□□ -0.69
VPS35-210ENST00000568784 RNF183Q96D59 192 aa10.77□□□□□ -0.69
VPS35-210ENST00000568784 NDUFA12Q9UI09 145 aa10.77□□□□□ -0.69
VPS35-210ENST00000568784 ANKRD17O75179 2603 aaKnown RBP10.77□□□□□ -0.69
VPS35-210ENST00000568784 GAGE2BQ13066 116 aa10.77□□□□□ -0.69
VPS35-210ENST00000568784 GAGE2EQ4V326 116 aa10.77□□□□□ -0.69
VPS35-210ENST00000568784 C2orf82Q6UX34 121 aa10.77□□□□□ -0.69
VPS35-210ENST00000568784 Q6ZSV7 163 aa10.77□□□□□ -0.69
VPS35-210ENST00000568784 GAGE2DQ9UEU5 116 aa10.77□□□□□ -0.69
VPS35-210ENST00000568784 IGKV3OR2-268A0A0C4DH90 116 aa10.76□□□□□ -0.69
VPS35-210ENST00000568784 M0QY20 66 aa10.76□□□□□ -0.69
VPS35-210ENST00000568784 RHODO00212 210 aa10.76□□□□□ -0.69
VPS35-210ENST00000568784 MSMBP08118 114 aa10.76□□□□□ -0.69
VPS35-210ENST00000568784 ZNF22P17026 224 aaPredicted RBP10.76□□□□□ -0.69
VPS35-210ENST00000568784 MED14OSP0DP75 135 aa10.76□□□□□ -0.69
VPS35-210ENST00000568784 C20orf203Q8NBC4 194 aa10.76□□□□□ -0.69
VPS35-210ENST00000568784 LINC01587Q99440 93 aa10.76□□□□□ -0.69
VPS35-210ENST00000568784 KIF25-AS1Q9Y6Z4 181 aa10.76□□□□□ -0.69
VPS35-210ENST00000568784 KLLNB2CW77 178 aa10.76□□□□□ -0.69
VPS35-210ENST00000568784 LEPROTO15243 131 aa10.76□□□□□ -0.69
VPS35-210ENST00000568784 FHL3Q13643 280 aa10.76□□□□□ -0.69
VPS35-210ENST00000568784 IGHV4OR15-8A0A075B7B6 117 aa10.75□□□□□ -0.69
VPS35-210ENST00000568784 A0A087WW49 117 aa10.75□□□□□ -0.69
VPS35-210ENST00000568784 UBE2D3P61077 147 aa10.75□□□□□ -0.69
VPS35-210ENST00000568784 UBE2D2P62837 147 aa10.75□□□□□ -0.69
VPS35-210ENST00000568784 TEX49A0A1B0GTD5 131 aa10.75□□□□□ -0.69
VPS35-210ENST00000568784 IGHV3-30-3P0DP02 117 aa10.75□□□□□ -0.69
VPS35-210ENST00000568784 ATXN8Q156A1 80 aa10.75□□□□□ -0.69
VPS35-210ENST00000568784 FLNCQ14315 2725 aa10.75□□□□□ -0.69
VPS35-210ENST00000568784 DEFB112Q30KQ8 113 aa10.75□□□□□ -0.69
VPS35-210ENST00000568784 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.74□□□□□ -0.69
VPS35-210ENST00000568784 A0A0J9YX75 114 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 TMEM262E9PQX1 116 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 LINC01619G3V211 115 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms