RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 NKAPP1Q8N9T2 125 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 UBALD1Q8TB05 177 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 AMELXQ99217 191 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 BPESC1Q9GZL8 116 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 RNF186Q9NXI6 227 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 CACNA1CQ13936 2221 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 TRBV7-4A0A0J9YYF1 115 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 C11orf86A6NJI1 115 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 KLLNB2CW77 178 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 H0Y9J4 135 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 BUB1B-PAK6H3BSN5 160 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 H7C2G1 150 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 COX7A2P2O60397 106 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 ERC2-IT1O76042 136 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 TSHBP01222 138 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 TRBV12-3P01733 135 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 RPL28P46779 137 aaKnown RBP2.31□□□□□ -2.04
VPS35-208ENST00000568612 LINC00313P59037 77 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 CXCL6P80162 114 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 LCE1EQ5T753 118 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 KRTAP5-11Q6L8G4 156 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 FAM53AQ6NSI3 398 aaPredicted RBP2.31□□□□□ -2.04
VPS35-208ENST00000568612 ATP11AUNQ6ZP68 121 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 CLEC2BQ92478 149 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 RMI2Q96E14 147 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 PHLDA3Q9Y5J5 127 aa2.31□□□□□ -2.04
VPS35-208ENST00000568612 CABIN1Q9Y6J0 2220 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 IGKV1-27A0A075B6S5 117 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 IGKV1-12A0A0C4DH73 117 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 hDV103S1A0JD37 113 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 EPOPA6NHQ4 379 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 IGIPA6NJ69 53 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 I3L3M4 83 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 M0R3E3 92 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 IGKV1D-12P01611 117 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 IGHV4-38-2P0DP08 117 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 MP68P56378 58 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 TSPEAR-AS2P59090 65 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 KIAA0087Q14695 138 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 Q6ZRP5 223 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 GPHB5Q86YW7 130 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 TMEM61Q8N0U2 210 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 LINC00337Q8N6G1 96 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 Q8N6K4 173 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 C14orf178Q8N769 122 aaPredicted RBP2.3□□□□□ -2.04
VPS35-208ENST00000568612 RNF185Q96GF1 192 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 IMMP1LQ96LU5 166 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 OBSCN-AS1Q96MR7 158 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 CNFNQ9BYD5 112 aa2.3□□□□□ -2.04
VPS35-208ENST00000568612 GON4LQ3T8J9 2241 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 TET2Q6N021 2002 aaPredicted RBP2.29□□□□□ -2.04
VPS35-208ENST00000568612 IGLV4-69A0A075B6H9 119 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 TRAV23DV6A0A075B6W5 121 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 A0A087WZ39 114 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 IGHV5-10-1A0A0J9YXX1 117 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 M0R1W7 72 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 LEPROTO15243 131 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 IGLV1-44P01699 117 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 SYCNQ0VAF6 134 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 LINC01554Q52M75 96 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 SPINK9Q5DT21 86 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 ADAMTSL4-AS1Q5T5F5 129 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 CLEC19AQ6UXS0 136 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 MUSTN1Q8IVN3 82 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 LINC00269Q8N2A0 174 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 KLF14Q8TD94 323 aaPredicted RBP2.29□□□□□ -2.04
VPS35-208ENST00000568612 ESM1Q9NQ30 184 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 LINC00846Q9NV44 126 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 C22orf24Q9Y442 160 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 SNURFQ9Y675 71 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 MED12Q93074 2177 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 FER1L5A0AVI2 2057 aa2.29□□□□□ -2.04
VPS35-208ENST00000568612 TRAV22A0A0B4J277 110 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 IGHV1-69DA0A0B4J2H0 117 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 CXorf51AA0A1B0GTR3 108 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 C17orf98A8MV24 154 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 C5orf67F2Z3F1 127 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 LHBP01229 141 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 LPAL2Q16609 132 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 MIAQ16674 131 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 LYZL1Q6UWQ5 148 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 PATE2Q6UY27 113 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 NOTCH2NLQ7Z3S9 236 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 ZNF843Q8N446 348 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 C11orf72Q8NBR9 251 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 TMEM141Q96I45 108 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 SCGB3A1Q96QR1 104 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 SMIM2Q9BVW6 85 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 ARRDC1-AS1Q9H2J1 176 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 SMAD5-AS1Q9Y6J3 95 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 ZFHX3Q15911 3703 aa2.28□□□□□ -2.04
VPS35-208ENST00000568612 MYO7BQ6PIF6 2116 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 DSCAMO60469 2012 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 IGHV1-45A0A0A0MS14 117 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 IGHV3OR16-9A0A0B4J2B5 98 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 IGKV1-8A0A0C4DH67 115 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 C16orf90A8MZG2 172 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 GNRH2O43555 120 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 BAALC-AS2P0C853 105 aa2.27□□□□□ -2.05
VPS35-208ENST00000568612 S100A4P26447 101 aaKnown RBP2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms